keyword
https://read.qxmd.com/read/38657416/an-overlooked-source-of-false-positives-in-edna-based-biodiversity-assessment-and-management
#1
JOURNAL ARTICLE
Wei Xiong, Hugh J MacIsaac, Aibin Zhan
Biodiversity conservation and management in urban aquatic ecosystems is crucial to human welfare, and environmental DNA (eDNA)-based methods have become popular in biodiversity assessment. Here we report a highly overlooked source of significant false positives for eDNA-based biodiversity assessment in urban aquatic ecosystems supplied with treated wastewater - eDNA pollution originating from treated wastewater represents a noteworthy source of false positives. To investigate whether eDNA pollution is specific to a certain treatment or prevalent across methods employed by wastewater treatment plants, we conducted tests on effluent treated using three different secondary processes, both before and after upgrades to tertiary treatment...
April 23, 2024: Journal of Environmental Management
https://read.qxmd.com/read/38656500/determining-macromolecular-structures-using-cryo-electron-microscopy
#2
JOURNAL ARTICLE
Pradeep Hiriyur Nagaraj
Structural insights into macromolecular and protein complexes provide key clues about the molecular basis of the function. Cryogenic electron microscopy (cryo-EM) has emerged as a powerful structural biology method for studying protein and macromolecular structures at high resolution in both native and near-native states. Despite the ability to get detailed structural insights into the processes underlying protein function using cryo-EM, there has been hesitancy amongst plant biologists to apply the method for biomolecular interaction studies...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38656496/one-dimensional-acrylamide-gel-electrophoresis-for-analysis-of-plant-samples
#3
JOURNAL ARTICLE
Gorji Marzban, Donatella Tesei
Polyacrylamide gel electrophoresis (PAGE) is a widely used technique for separating proteins from complex plant samples. Prior to the analysis, proteins must be extracted from plant tissues, which are rather complex than other types of biological material. Different protocols have been applied depending on the protein source, such as seeds, pollen, leaves, roots, and flowers. Total protein amounts must also be determined before conducting gel electrophoresis. The most common methodologies include PAGE under native or denaturing conditions...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38655919/phytochemical-screening-of-podocarpus-lambertii-klotzch-ex-endl-leaf-extracts-and-potential-antimicrobial-antioxidant-and-antibiofilm-activity
#4
JOURNAL ARTICLE
Debora Marina Bandeira, Juliana M Corrêa, Larissa Valéria Laskoski, Jéssica Rosset, Lázaro Henrique S M Conceição, Simone D Gomes, Fabiana Gisele S Pinto
Species of the genus Podocarpus L'Hér. ex Pers.present biological activities, such as analgesic, antioxidant, antifungal, acting in the fight against anemia, depurative and fortifying. Podocarpus lambertii Klotzch ex Endl. is a Brazilian native species popularly known as maritime pine and lacks information about its phytochemical profile and possible biological activities. The study was conducted to determine the phytochemical composition of soluble plant extracts of acetone (EA), ethyl acetate (EAE) and hexane (HE) from leaves of P...
2024: Anais da Academia Brasileira de Ciências
https://read.qxmd.com/read/38655623/wound-healing-properties-of-stryphnodendron-adstringens-barbatim%C3%A3-o-in-skin-and-mucosa-injuries-a-scoping-review-protocol
#5
JOURNAL ARTICLE
Rayane Teresa da Silva Costa Drigo, Adriana Caroci Becker, Maria Luiza Gonzalez Riesco, Victor Hugo Alves Mascarenhas, Jan M Nick
OBJECTIVE: This review will map the literature on the types of research and methods used to investigate the wound-healing properties of Stryphnodendron adstringens (barbatimão) in skin and mucosa injuries. INTRODUCTION: Barbatimão is a Brazilian native plant and its wound-healing properties have been described in the literature since the colonial period. It is one of the 71 plants included in the Brazilian health system's national list of medicinal plants of interest...
April 24, 2024: JBI evidence synthesis
https://read.qxmd.com/read/38654150/integrated-analysis-of-transcriptome-and-mirnaome-reveals-the-heat-stress-response-of-pinellia-ternata-seedlings
#6
JOURNAL ARTICLE
Chen Bo, Mengmeng Liu, Qian You, Xiao Liu, Yanfang Zhu, Yongbo Duan, Dexin Wang, Tao Xue, Jianping Xue
Pinellia ternata (Thunb.) Briet., a valuable herb native to China, is susceptible to the "sprout tumble" phenomenon because of high temperatures, resulting in a significant yield reduction. However, the molecular regulatory mechanisms underlying the response of P. ternata to heat stress are not well understood. In this study, we integrated transcriptome and miRNAome sequencing to identify heat-response genes, microRNAs (miRNAs), and key miRNA-target pairs in P. ternata that differed between heat-stress and room-temperature conditions...
April 23, 2024: BMC Genomics
https://read.qxmd.com/read/38651163/germination-patterns-and-seedling-growth-of-congeneric-native-and-invasive-mimosa-species-implications-for-risk-assessment
#7
JOURNAL ARTICLE
Nisha Kharel, Anuj Dangol, Ashmita Shrestha, Hemanti Airi, Anjana Devkota, Lal Bahadur Thapa, Bharat Babu Shrestha
Comparisons of plant traits between native and invasive congeners are useful approaches for identifying characteristics that promote invasiveness. We compared germination patterns and seedling growth of locally sympatric populations of native Mimosa himalayana and two varieties of invasive M. diplotricha (var. diplotricha and var. inermis ) growing in southeastern Nepal. Seeds were germinated under a 12-h photoperiod or complete dark, low (25/15°C day/night) and high (30/20°C) temperatures, different water stress levels (0, -0...
April 2024: Ecology and Evolution
https://read.qxmd.com/read/38650705/mapping-qtls-for-blight-resistance-and-morpho-phenological-traits-in-inter-species-hybrid-families-of-chestnut-castanea-spp
#8
JOURNAL ARTICLE
Shenghua Fan, Laura L Georgi, Frederick V Hebard, Tetyana Zhebentyayeva, Jiali Yu, Paul H Sisco, Sara F Fitzsimmons, Margaret E Staton, Albert G Abbott, C Dana Nelson
Chestnut blight (caused by Cryphonectria parasitica ), together with Phytophthora root rot (caused by Phytophthora cinnamomi ), has nearly extirpated American chestnut ( Castanea dentata ) from its native range. In contrast to the susceptibility of American chestnut, many Chinese chestnut ( C. mollissima ) genotypes are resistant to blight. In this research, we performed a series of genome-wide association studies for blight resistance originating from three unrelated Chinese chestnut trees (Mahogany, Nanking and M16) and a Quantitative Trait Locus (QTL) study on a Mahogany-derived inter-species F2 family...
2024: Frontiers in Plant Science
https://read.qxmd.com/read/38650611/pest-categorisation-of-crisicoccus-seruratus
#9
JOURNAL ARTICLE
Claude Bragard, Paula Baptista, Elisavet Chatzivassiliou, Francesco Di Serio, Paolo Gonthier, Josep Anton Jaques Miret, Annemarie Fejer Justesen, Christer Sven Magnusson, Panagiotis Milonas, Juan A Navas-Cortes, Stephen Parnell, Roel Potting, Philippe Lucien Reignault, Emilio Stefani, Hans-Hermann Thulke, Wopke Van der Werf, Antonio Vicent Civera, Jonathan Yuen, Lucia Zappalà, Jean-Claude Grégoire, Chris Malumphy, Spyridon Antonatos, Virag Kertesz, Dimitrios Papachristos, Oresteia Sfyra, Alan MacLeod
Following the commodity risk assessments of Acer palmatum plants grafted on A. davidii from China, in which Crisicoccus matsumotoi (Hemiptera: Pseudococcidae) was identified as a pest of possible concern, the European Commission requested the EFSA Panel on Plant Health to conduct a pest categorisation of C. matsumotoi for the territory of the European Union. Recent taxonomic revision of the genus Crisisoccus concluded that C. matsumotoi is a synonym of C. seruratus ; therefore, the categorisation will use the current valid name C...
April 2024: EFSA journal
https://read.qxmd.com/read/38649814/transplanted-sagebrush-wildlings-exhibit-higher-survival-than-greenhouse-grown-tubelings-yet-both-recruit-new-plants
#10
JOURNAL ARTICLE
Elizabeth C Bailey, Eric Thacker, Thomas A Monaco, Kari E Veblen
BACKGROUND: Land uses such as crop production, livestock grazing, mining, and urban development have contributed to degradation of drylands worldwide. Loss of big sagebrush (Artemisia tridentata) on disturbed drylands across the western U.S. has prompted massive efforts to re-establish this foundational species. There has been growing interest in avoiding the severe limitations experienced by plants at the seed and seedling stages by instead establishing plants from containerized greenhouse seedlings ("tubelings")...
April 22, 2024: BMC ecology and evolution
https://read.qxmd.com/read/38649801/biochemical-characterization-of-acyl-coa-diacylglycerol-acyltransferase2-from-the-diatom-phaeodactylum-tricornutum-and-its-potential-effect-on-lc-pufas-biosynthesis-in-planta
#11
JOURNAL ARTICLE
Sylwia Klińska-Bąchor, Kamil Demski, Yangmin Gong, Antoni Banaś
BACKGROUND: Eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), belonging to ω-3 long-chain polyunsaturated fatty acids (ω3-LC-PUFAs), are essential components of human diet. They are mainly supplemented by marine fish consumption, although their native producers are oleaginous microalgae. Currently, increasing demand for fish oils is insufficient to meet the entire global needs, which puts pressure on searching for the alternative solutions. One possibility may be metabolic engineering of plants with an introduced enzymatic pathway producing ω3-LC-PUFAs...
April 23, 2024: BMC Plant Biology
https://read.qxmd.com/read/38648958/cli-a-new-protocol-for-the-isolation-of-lactic-acid-bacteria-from-complex-plant-samples
#12
JOURNAL ARTICLE
Mariannys Chavez, Sharon Viscardi, María José Ruiz, Eulàlia Sans-Serramitjana, Paola Durán
Lactic Acid Bacteria (LAB) are predominantly probiotic microorganisms and the most are Generally Recognized As Safe (GRAS). LAB inhabit in the human gut ecosystem and are largely found in fermented foods and silage. In the last decades, LAB have also has been found in plant microbiota as a new class of microbes with probiotic activity to plants. For this reason, today the scientific interest in the study and isolation of LAB for agronomic application has increased. However, isolation protocols from complex samples such as plant tissues are scarce and inefficient...
April 20, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38648338/-schoenoplectus-americanus-as-a-potential-phytoremediator-in-vitro-assessment-of-its-ability-to-remove-contaminants-in-domestic-and-tannery-wastewater
#13
JOURNAL ARTICLE
María R Quevedo, Paola S González, Cintia N Barroso, Cintia E Paisio
Growing industrialization and urbanization have led to increased water pollution due to the inadequate treatment and disposal of domestic wastewater (DW) and wastewater produced by industries such as tanneries (TW). These wastewaters are characterized by high concentrations of organic matter, nutrients, sulphates, chlorides and high microbial load. TW also contains phenols and chromium, which disturb and harm the ecosystem the local. The decontamination of wastewater prior to their discharge through biological tools, especially the use of species that are native to the site in need of treatment, has been described as effective and advantageous...
April 22, 2024: Environmental Technology
https://read.qxmd.com/read/38646566/growth-enhancement-and-changes-in-bacterial-microbiome-of-cucumber-plants-exhibited-by-biopriming-with-some-native-bacteria
#14
JOURNAL ARTICLE
Navya Botlagunta, Subramanian Babu
This study investigated the impact of a mixture of six endophytic bacterial strains isolated from cucumber plants on the growth and microbiome diversity of six cucumber traditional varieties and hybrids. Six bacterial species were isolated and identified by 16 s rRNA sequencing. All the bacteria showed plant growth promoting traits.  Bacillus tequilensis  showed 80 % inhibition of the mycelia growth of  Fusarium oxysporum f.sp.  cucumarinum  (Foc). Mixed culture of all the bacteria was prepared and applied back to the varieties and hybrids of cucumber plants through seed soaking...
June 2024: Saudi Journal of Biological Sciences
https://read.qxmd.com/read/38642624/leonurus-japonicus-houtt-modulates-neuronal-apoptosis-in-intracerebral-hemorrhage-insights-from-network-pharmacology-and-molecular-docking
#15
JOURNAL ARTICLE
Jia-Wei Wu, Wei Gao, Li-Ping Shen, Yong-Lin Chen, Shi-Qing Du, Zhi-Yong Du, Xu-Dong Zhao, Xiao-Jie Lu
ETHNOPHARMACOLOGICAL RELEVANCE: Leonurus japonicus Houtt. (Labiatae), commonly known as Chinese motherwort, is a herbaceous flowering plant that is native to Asia. It is widely acknowledged in traditional medicine for its diuretic, hypoglycemic, antiepileptic properties and neuroprotection. Currently, Leonurus japonicus (Leo) is included in the Pharmacopoeia of the People's Republic of China. Traditional Chinese Medicine (TCM) recognizes Leo for its myriad pharmacological attributes, but its efficacy against ICH-induced neuronal apoptosis is unclear...
April 18, 2024: Journal of Ethnopharmacology
https://read.qxmd.com/read/38642622/anti-inflammatory-effect-of-anadenanthera-colubrina-var-cebil-griseb-altschul-in-experimental-elastase-induced-pulmonary-emphysema-in-rats
#16
JOURNAL ARTICLE
Vinicius Duarte Pimentel, Boris Timah Acha, Gabriel Felicio Gomes, João Luiz Macedo de Sousa Cardoso, Charllyton Luis Sena da Costa, Nelson Jorge Carvalho Batista, Daniel Dias Rufino Arcanjo, Wellington Dos Santos Alves, Francisco de Assis Oliveira
ETHNOPHARMACOLOGICAL RELEVANCE: Medicinal plants have shown promise in the search for new treatments of pulmonary emphysema. Anadenanthera colubrina, a species native to the Caatinga biome in northeastern Brazil, is widely recognized and traditionally employed in the treatment of pulmonary diseases. Many studies corroborate popular knowledge about the medicinal applications of A. colubrina, which has demonstrated a remarkable variety of pharmacological properties, however, its anti-inflammatory and antioxidant properties are highlighted...
April 18, 2024: Journal of Ethnopharmacology
https://read.qxmd.com/read/38641562/introduction-and-establishment-of-euwallacea-fornicatus-coleoptera-curculionidae-scolytinae-in-brazil
#17
JOURNAL ARTICLE
Luana S Covre, Thomas H Atkinson, Andrew J Johnson, Carlos A H Flechtmann
Euwallacea fornicatus is an invasive tree pest able to infest healthy plants and cause damage to many host plants. This beetle has become established in several countries where it was introduced. It has now become established in Brazil, and while the original introduction site remains uncertain, there is a possibility of multiple introductions. We report the first evidence for the establishment of E. fornicatus with molecular confirmation, as well as its distribution, and host plants in Brazil. Euwallacea fornicatus has spread to main commercial avocado groves, other monocultures, and native vegetation in the country, and its pest status puts it as a threat, mainly to Brazilian avocado producers...
April 19, 2024: Journal of Economic Entomology
https://read.qxmd.com/read/38641077/the-water-extracts-from-the-oil-cakes-of-prinsepia-utilis-repair-the-epidermal-barrier-via-up-regulating-corneocyte-envelope-proteins-lipid-synthases-and-tight-junction-proteins
#18
JOURNAL ARTICLE
Ying Tu, Ran An, Hua Gu, Na Li, Huan Yan, Hai-Yang Liu, Li He
ETHNOPHARMACOLOGICAL RELEVANCE: Prinsepia utilis Royle, native to the Himalayan region, has a long history of use in traditional medicine for its heat-clearing, detoxification, anti-inflammatory, and analgesic properties. Oils extracted from P. utilis seeds are also used in cooking and cosmetics. With the increasing market demand, this extraction process generates substantial industrial biowastes. Recent studies have found many health benefits with using aqueous extracts of these biowastes, which are also rich in polysaccharides...
April 17, 2024: Journal of Ethnopharmacology
https://read.qxmd.com/read/38640430/first-report-of-a-rust-disease-of-lycium-chinense-caused-by-puccinia-tumidipes-in-korea
#19
JOURNAL ARTICLE
Hyeyoun Ryu, Minji Ryu, Eun Jin Jeon, Young Ju Park, Byeongsam Kang, Yoshitaka Ono, Ok-Kyung Kim, Seong-Jin Lee
Lycium chinense Mill is a deciduous broad-leaved shrub belonging to the Solanaceae family and, is widely distributed throughout Korea. This plant is native to, or cultivated for various oriental medicinal purposes in, multiple regions of Asia, including Korea, China, and Japan (Lee 1982; Kim et al. 1994). Eleven Puccinia species have been reported to infect Lycium species (Otálora et al. 2018). In May and October 2022, symptoms of rust disease caused by Puccinia sp. were observed on almost all the leaves of about 60 sprawling stems of L...
April 19, 2024: Plant Disease
https://read.qxmd.com/read/38640425/first-report-of-powdery-mildew-caused-by-podosphaera-xanthii-on-sphagneticola-trilobata-in-hainan-province-china
#20
JOURNAL ARTICLE
Hua Wu, Yingwen Pan
Sphagneticola trilobata (L.) Pruski is a perennial creeping herb of the Asteraceae family, which is native to South America. It was introduced into Southern China as a groundcover in the 1970s (Zhang et al. 2023). Now it is mainly used for folk medicine to treat various kinds of inflammatory, incuding joint pain, rheumatic diseases, arthritis, in addition to treating persistent wounds, ulcers, and edemas (Gonçalves et al. 2022). In February and November 2023, powdery mildew symptoms were observed on 60% of S...
April 19, 2024: Plant Disease
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