Andrea Patrizia Falanga, Alessandro D'Urso, Gabriele Travagliante, Chiara Maria Antonietta Gangemi, Maria Marzano, Stefano D'Errico, Monica Terracciano, Francesca Greco, Luca De Stefano, Principia Dardano, Ilaria Rea, Gennaro Piccialli, Giorgia Oliviero, Nicola Borbone
Herein, we evaluated the interaction of the tetracationic porphyrin H2 TCPPSpm4 with three distinct DNA G-quadruplex (G4) models, i.e., the tetramolecular G4 d(TGGGGT)4 (Q1 ), the 5'-5' stacked G4-dimer [d(CGGAGGT)4 ]2 (Q2 ), and a mixture of 5'-5' stacked G-wires [d(5'-CGGT-3'-3'-GGC-5')4 ]n (Qn ). The combined data obtained from UV-Vis, CD, fluorescence, PAGE, RLS, AFM, NMR, and HPLC-SEC experiments allowed us to shed light on the binding mode of H2 TCPPSpm4 with the three G4 models differing for the type and the number of available G4 ending faces, the length of the G4 units, and the number of stacked G4 building blocks...
April 24, 2024: International Journal of Biological Macromolecules