keyword
https://read.qxmd.com/read/38138941/from-data-to-insights-machine-learning-empowers-prognostic-biomarker-prediction-in-autism
#1
JOURNAL ARTICLE
Ecmel Mehmetbeyoglu, Abdulkerim Duman, Serpil Taheri, Yusuf Ozkul, Minoo Rassoulzadegan
Autism Spectrum Disorder (ASD) poses significant challenges to society and science due to its impact on communication, social interaction, and repetitive behavior patterns in affected children. The Autism and Developmental Disabilities Monitoring (ADDM) Network continuously monitors ASD prevalence and characteristics. In 2020, ASD prevalence was estimated at 1 in 36 children, with higher rates than previous estimates. This study focuses on ongoing ASD research conducted by Erciyes University. Serum samples from 45 ASD patients and 21 unrelated control participants were analyzed to assess the expression of 372 microRNAs (miRNAs)...
December 15, 2023: Journal of Personalized Medicine
https://read.qxmd.com/read/37960876/the-value-of-a-three-microrna-panel-in-serum-for-prostate-cancer-screening
#2
JOURNAL ARTICLE
Shengjie Lin, Chen Sun, Rongkang Li, Chong Lu, Xinji Li, Zhenyu Wen, Zhenjian Ge, Wenkang Chen, Yingqi Li, Hang Li, Yongqing Lai
BACKGROUND: Globally, prostate cancer is the second most common malignancy in males. Serum microRNAs (miRNAs) may function as non-invasive and innovative biomarkers for various cancers. Our study aimed to determine potential miRNAs for prostate cancer screening. METHODS: A three-stage study was accomplished to ascertain crucial miRNAs as markers. In the screening stage, we searched PubMed for aberrantly expressed miRNAs relevant to prostate cancer and selected them as candidate miRNAs...
November 13, 2023: International Journal of Biological Markers
https://read.qxmd.com/read/37328892/microrna-361-5p-acts-as-a-biomarker-for-carotid-artery-stenosis-and-promotes-vascular-smooth-muscle-cell-proliferation-and-migration
#3
JOURNAL ARTICLE
Fei Wang, Yumei An, Huihui Hao
BACKGROUND: Vascular smooth muscle cells (VSMCs) dysfunction participates in carotid artery stenosis (CAS). The study aimed to examine the expression pattern of miR-361-5p in CAS patients, and explore its role in VSMCs proliferation and migration. METHODS: qRT-PCR was performed for the detection of miR-361-5p in serum samples of 150 CAS cases and 150 healthy people. Multiple logistic regression analysis and receiver operating characteristic (ROC) curve was accomplished to detect diagnostic value via SPSS 21...
June 16, 2023: BMC Medical Genomics
https://read.qxmd.com/read/37291944/primary-testicular-lymphoma-demonstrates-overexpression-of-the-wilms-tumor-1-gene-and-different-mrna-and-mirna-expression-profiles-compared-to-nodal-diffuse-large-b-cell-lymphoma
#4
JOURNAL ARTICLE
Adnan Mansoor, Ariz Akhter, Meer-Taher Shabani-Rad, Jean Deschenes, Asli Yilmaz, Kiril Trpkov, Douglas Stewart
Diffuse large B-cell lymphoma (DLBCL) shows a high degree of clinical and biological heterogeneity. Primary testicular lymphoma (PTL) is an extranodal variant of DLBCL associated with a higher risk of recurrence, including contralateral testicles and central nervous system sanctuary sites. Several molecular aberrations, including somatic mutation of MYD88, CD79B, and upregulation of NF-kB, PDL-1, and PDL-2, are thought to contribute to the pathogenesis and poor prognosis of PTL. However, additional biomarkers are needed that may improve the prognosis and help understand the PTL biology and lead to new therapeutic targets...
June 8, 2023: Hematological Oncology
https://read.qxmd.com/read/37285736/circgfra1-a-circular-rna-with-important-roles-in-human-carcinogenesis
#5
REVIEW
Sheyda Khalilian, Zahra Mohajer, Mohammad Amin Khazeei Tabari, Farbod Ghobadinezhad, Soudeh Ghafouri-Fard
Circular RNAs (circRNAs) are a type of covalently closed RNA molecules, which are mainly formed by back splicing of a precursor mRNA upstream exon into a downstream exon. Abnormally expressed circRNAs can modulate gene transcription by indirectly interacting with microRNAs (miRNAs). According to the current studies, circGFRA1 has been suggested to be upregulated in various cancers. circGFRA1 (hsa_circ_005239) is a type of cancer-related circRNA, which is predicted to be originated from the GFRA1 on chromosome 10...
June 1, 2023: Pathology, Research and Practice
https://read.qxmd.com/read/37234179/correlation-of-wilms-tumor-1-wt1-with-oxidative-stress-markers-and-expression-of-mir-361-5p-new-aspect-of-wt1-in-breast-cancer
#6
JOURNAL ARTICLE
Fariba Pishbin, Nasrin Ziamajidi, Roghayeh Abbasalipourkabir, Rezvan Najafi, Maryam Farhadian
Breast carcinoma is a heterogeneous disease that affects millions of women worldwide. Wilms' tumor 1 (WT1) is an oncogene that promotes proliferation, metastasis and reduces apoptosis. MicroRNAs (miR) are short noncoding RNAs with a major role in cancer metastasis. In present study, we investigated the association of serum level of WT1 with oxidative stress and expression of miR-361-5p in breast cancer. Serum samples of 45 patients and of 45 healthy women analyzed for protein level of WT1, malondialdehyde (MDA), total oxidant status (TOS), and total antioxidant capacity (TAC)...
July 2023: Indian Journal of Clinical Biochemistry: IJCB
https://read.qxmd.com/read/37222950/induction-of-perineural-invasion-in-salivary-adenoid-cystic-carcinoma-by-circular-rna-rnf111
#7
JOURNAL ARTICLE
RongBin Su, ShuSheng Zhong, PengHui Wang, ZhongWei Lin
OBJECTIVE: Local recurrence, distant metastasis, and perineural invasion (PNI) viciously occur in salivary adenoid cystic carcinoma (SACC), resulting in a poor prognosis. This study aimed to explore the mechanism by which circular RNA RNF111 (circ-RNF111) regulates PNI in SACC by targeting the miR-361-5p/high mobility group box 2 (HMGB2) axis. METHOD: Circ-RNF111 and HMGB2 were highly expressed in SACC specimens, while miR-361-5p was underexpressed. Functional experiments showed that ablating circ-RNF111 or promoting miR-361-5p hindered the biological functions and PNI of SACC-LM cells...
May 24, 2023: Clinical & Translational Oncology
https://read.qxmd.com/read/37189806/microrna-signatures-in-cartilage-ageing-and-osteoarthritis
#8
JOURNAL ARTICLE
Panagiotis Balaskas, Katarzyna Goljanek-Whysall, Peter D Clegg, Yongxiang Fang, Andy Cremers, Aibek Smagul, Tim J M Welting, Mandy J Peffers
Osteoarthritis is the most common degenerative joint disorder. MicroRNAs are gene expression regulators that act post-transcriptionally to control tissue homeostasis. Microarray analysis was undertaken in osteoarthritic intact, lesioned and young intact cartilage. Principal component analysis showed that young intact cartilage samples were clustered together; osteoarthritic samples had a wider distribution; and osteoarthritic intact samples were separated into two subgroups, osteoarthritic-Intact-1 and osteoarthritic-Intact-2...
April 17, 2023: Biomedicines
https://read.qxmd.com/read/37079107/moyamoya-disease-specific-extracellular-vesicle-derived-micrornas-in-the-cerebrospinal-fluid-revealed-by-comprehensive-expression-analysis-through-microrna-sequencing
#9
JOURNAL ARTICLE
Shinji Ota, Kinya Yokoyama, Fumiaki Kanamori, Takashi Mamiya, Kenji Uda, Yoshio Araki, Toshihiko Wakabayashi, Kazuhiro Yoshikawa, Ryuta Saito
PURPOSE: To examine the specific changes that occur in the expression levels of extracellular vesicle-derived microRNAs (miRNAs) in intracranial cerebrospinal fluid (CSF) in moyamoya disease. METHODS: Patients with arteriosclerotic cerebral ischemia were used as controls to eliminate the effects of cerebral ischemia. Intracranial CSF was collected from moyamoya disease and control patients during bypass surgery. Extracellular vesicles (EVs) were extracted from the CSF...
August 2023: Acta Neurochirurgica
https://read.qxmd.com/read/37056821/cox10-as1-mediated-mir-361-5p-regulated-cell-invasion-and-migration-by-targeting-spry1-in-oral-squamous-cell-carcinoma
#10
JOURNAL ARTICLE
Jing Deng, Maolin Wu
BACKGROUND: COX10-AS1 belongs to the class of lncRNA and has been shown to influence carcinogenesis; however, its function and underlying mechanism in oral squamous cell carcinoma are still unclear (OSCC). METHOD: Western blotting, immunohistochemistry, and RT-PCR were used to identify gene expression. Cell invasion and migration were discovered using Transwell and Scratch-Wound analyses. The interaction between lncRNA and miRNA was examined using dual-luciferase and immunofluorescence assays...
2023: American Journal of Translational Research
https://read.qxmd.com/read/36912070/nck1-as1-promotes-the-proliferation-migration-invasion-and-emt-of-non-small-cell-lung-cancer-by-regulating-the-mir-361-5p-adam10-axis
#11
JOURNAL ARTICLE
Bingchen Wu, Zizong Wang, Hanlin Xu, Xiangyang Chu, Qiwen Jiang
Lung cancer, one of the most frequently diagnosed cancers, causes a huge number of mortalities globally. Among lung cancers, non-small cell lung cancer (NSCLC) is the most recorded. Despite accumulating research, the molecular basis of NSCLC progression remains poorly known. Therefore, we aim to assess the function of NCK1-AS1 in NSCLC and elucidate the molecular mechanism. Firstly, we quantified the NCK1-AS1 level in tumors and adjacent healthy tissues. NCK1-AS1 was significantly upregulated in NSCLC tumors, which was associated with poor prognosis in patients...
March 3, 2023: Histology and Histopathology
https://read.qxmd.com/read/36804517/an-evaluation-of-the-role-of-mir-361-5p-in-senescence-and-systemic-ageing
#12
JOURNAL ARTICLE
Emad Manni, Nicola Jeffery, David Chambers, Luke Slade, Timothy Etheridge, Lorna W Harries
Senescent cells are key regulators of ageing and age-associated disease. MicroRNAs (miRs) are a key component of the molecular machinery governing cellular senescence, with several known to regulate important genes associated with this process. We sought to identify miRs associated with both senescence and reversal by pinpointing those showing opposing directionality of effect in senescence and in response to senotherapy. Cellular senescence phenotypes were assessed in primary human endothelial cells following targeted manipulation of emergent miRNAs...
February 16, 2023: Experimental Gerontology
https://read.qxmd.com/read/36732923/lncrna-prkcq-as1-regulates-paclitaxel-resistance-in-triple-negative-breast-cancer-cells-through-mir-361-5p-pik3c3-mediated-autophagy
#13
JOURNAL ARTICLE
Shurong Zheng, Weida Fu, Qidi Huang, Jieyu Zhou, Kangkang Lu, Junwei Gu, Ruimin Ma, Guilong Guo
Paclitaxel (PTX) resistance is a key cause of chemotherapy failure in patients with triple negative breast cancer (TNBC). The aim of this study is to investigate the effect and mechanism of long non-coding RNA (lncRNA) on the PTX resistance of TNBC cells through autophagy. MDA-MB-231 cells are used to induce the PTX-resistant TNBC cell line MDA-MB-231.PR (MDR) by increasing dose intermittently. Quantitative real-time polymerase chain reaction (qRT-PCR) was used to validate the mRNA levels of phosphoinositide-3-kinase class 3 (PIK3C3), miR-361-5p and lncRNA PRKCQ-AS1 in the cells, and Western blot analysis was used to detect the protein expressions of PIK3C3, autophagy-related, drug-resistant and apoptosis-related genes...
February 2, 2023: Clinical and Experimental Pharmacology & Physiology
https://read.qxmd.com/read/36564072/mir-361-5p-inhibits-the-wnt-axis-via-targeting-lgr4-and-promotes-sepsis-induced-myocardial-injury
#14
JOURNAL ARTICLE
Danhui Li, Jianwei Le, Jihui Ye, Zhen Fan
OBJECTIVE: A growing body of evidence demonstrated that microRNAs (miRNAs) play a key role in sepsis-induced organ dysfunction. However, the mechanism of miR-361-5p in sepsis-induced myocardial injury remains to be clarified. METHODS: A mouse model of sepsis-induced myocardial injury was established using lipopolysaccharide (LPS). MiR-361-5p expression level was determined by quantitative reverse transcription-polymerase chain reaction (RT-qPCR). G protein-coupled receptor-4 (Lgr4), apoptosis-related proteins, and the Wnt signaling pathway-related proteins were determined by Western blotting...
November 2022: Annals of Clinical and Laboratory Science
https://read.qxmd.com/read/36421815/transcriptome-sequencing-reveals-tgf-%C3%AE-mediated-noncoding-rna-regulatory-mechanisms-involved-in-dna-damage-in-the-661w-photoreceptor-cell-line
#15
JOURNAL ARTICLE
Yuke Huang, Xi Chen, Zhigao Jiang, Qian Luo, Linxi Wan, Xiangtao Hou, Keming Yu, Jing Zhuang
Transforming growth factor β (Tgf-β), a pleiotropic cytokine, can enhance DNA repair in various cells, including cancer cells and neurons. The noncoding regulatory system plays an important role in Tgf-β-mediated biological activities, whereas few studies have explored its role in DNA damage and repair. In this study, we suggested that Tgf-β improved while its inhibitor LSKL impaired DNA repair and cell viability in UV-irradiated 661W cells. Moreover, RNA-seq was carried out, and a total of 106 differentially expressed (DE)-mRNAs and 7 DE-lncRNAs were identified between UV/LSKL and UV/ctrl 661W cells...
November 17, 2022: Genes
https://read.qxmd.com/read/36397699/n6-methyladenosine-modification-m6a-of-circrna-znf638-contributes-the-induced-activation-of-shf-stem-cells-through-mir-361-5p-wnt5a-axis-in-cashmere-goats
#16
JOURNAL ARTICLE
Ronghuan Yin, Ronglan Yin, Man Bai, Yixing Fan, Zeying Wang, Yubo Zhu, Qi Zhang, Taiyu Hui, Jincheng Shen, Siyu Feng, Wenlin Bai
Objective: The objective of this study was to investigate the effects of N6-Methyladenosine modification-circRNA-zinc finger protein 638 (m6A-circRNA-ZNF638) on the induced activation of secondary hair follicle (SHF) stem cells with its potential mechanisms in cashmere goats. Methods: The m6A modification of ZNF638 was analyzed using Methylation Immunoprecipitation (Me-RIP) with real-time quantitative PCR (RT-qPCR) technique in SHF stem cells. The effects of circRNA-ZNF638 on the induced activation of SHF stem cells in m6A dependence were evaluated through the overexpression of circRNA-ZNF638/its m6A-deficient mutants in circRNA-ZNF638 knockdown SHF stem cells...
November 14, 2022: Animal bioscience
https://read.qxmd.com/read/36396820/metformin-abrogates-fusobacterium-nucleatum-induced-chemoresistance-in-colorectal-cancer-by-inhibiting-mir-361-5p-sonic-hedgehog-signaling-regulated-stemness
#17
JOURNAL ARTICLE
Xia-Lu Hong, Ta-Chung Yu, Xiao-Wen Huang, Ji-Lin Wang, Tian-Tian Sun, Ting-Ting Yan, Cheng-Bei Zhou, Hui-Min Chen, Wen-Yu Su, Wan Du, Hua Xiong
BACKGROUND: Chemotherapy resistance is the major cause of recurrence in patients with colorectal cancer (CRC). A previous study found that Fusobacterium (F.) nucleatum promoted CRC chemoresistance. Additionally, metformin rescued F. nucleatum-induced tumorigenicity of CRC. Here, we aimed to investigate whether metformin could revert F. nucleatum-induced chemoresistance and explore the mechanism. METHODS: The role of metformin in F. nucleatum-infected CRC cells was confirmed using cell counting kit 8 assays and CRC xenograft mice...
November 17, 2022: British Journal of Cancer
https://read.qxmd.com/read/36275636/aldh1a3-linc00284-axis-mediates-the-invasion-of-colorectal-cancer-by-targeting-tgf-%C3%AE-signaling-via-sponging-mir-361-5p
#18
JOURNAL ARTICLE
Chunlin Ke, Minmin Shen, Peirong Wang, Zhihua Chen, Suyong Lin, Feng Dong
ALDH1A3 and Linc00284 involve in colorectal cancer (CRC) development; however, the regulatory mechanism is still unclear. In this study, we collected clinicopathological characteristics and tissue samples from 73 CRC patients to analyze the expression of ALDH1A3, Linc00284, TGF β signaling and miR-361-5p using qPCR, Western blotting, and ELISA. Multiple CRC cell lines were evaluated in this study, and the highest level of ALDH1A3 was observed in SW480 cells. To investigate the regulatory mechanism, RIP and luciferase assays were used to validate the interaction between Linc00284, miR-361-5p, and TGF β ...
2022: International Journal of Genomics
https://read.qxmd.com/read/36217923/microrna-binding-site-variation-is-enriched-in-psychiatric-disorders
#19
JOURNAL ARTICLE
Michael P Geaghan, William R Reay, Murray J Cairns
Psychiatric disorders have a polygenic architecture, often associated with dozens or hundreds of independent genomic loci. Most associated loci impact non-coding regions of the genome, suggesting that the majority of disease heritability originates from the disruption of regulatory sequences. While most research has focused on variants that modify regulatory DNA elements, those affecting cis-acting RNA sequences, such as miRNA binding sites, are also likely to have a significant impact. We intersected genome-wide association study (GWAS) summary statistics with the dbMTS database of predictions for miRNA binding site variants (MBSVs)...
October 11, 2022: Human Mutation
https://read.qxmd.com/read/36216243/adipocyte-derived-exosomal-linc00968-promotes-mouse-retina-microvascular-endothelial-cell-dysfunction-in-a-high-glucose-environment-by-modulating-the-mir-361-5p-traf3-axis
#20
JOURNAL ARTICLE
Wenjing He, Anhua Lin, Chenxiu Wang
As a major cause of mortality, cardiovascular disease is associated with obesity and diabetes. However, the molecular mechanism by which diabetes-obesity causes cardiovascular complications is largely unknown. In this study, the crosstalk mediated by 3T3-L1 preadipocytes and mouse retina microvascular endothelial cells (mRMECs) was determined after co-culturing performed with a Transwell system or measuring exosome uptake by mRMECs. CCK-8 assays, EdU incorporation assays, TUNEL staining, and ELISAs were used to evaluate the functions of mRMECs...
October 10, 2022: Hormone and Metabolic Research
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