keyword
https://read.qxmd.com/read/38693932/hybrids-as-mirrors-of-the-past-genomic-footprints-reveal-spatio-temporal-dynamics-and-extinction-risk-of-alpine-extremophytes-in-the-mountains-of-central-asia
#1
JOURNAL ARTICLE
Anna Wróbel, Ewelina Klichowska, Marcin Nobis
Hybridization is one of the key processes shaping lineage diversification, particularly in regions that experienced strong climate oscillations. The alpine biome with its rich history of glacial-interglacial cycles and complex patterns of species distribution shifts offers an excellent system to investigate the impact of gene flow on population dynamics and speciation, important issues for evolutionary biology and biodiversity conservation. In this study, we combined genomic data (DArTseq), chloroplast markers, and morphology to examine phylogenetic relationships and the permeability of species boundaries and their evolutionary outcomes among the alpine extremophilic species of Puccinellia (Poaceae) in the Pamir Mountains, a part of the Mountains of Central Asia biodiversity hotspot...
2024: Frontiers in Plant Science
https://read.qxmd.com/read/38692838/why-do-some-lineages-radiate-while-others-do-not-perspectives-for-future-research-on-adaptive-radiations
#2
JOURNAL ARTICLE
Rishi De-Kayne, Rowan Schley, Julia M I Barth, Luke C Campillo, Catalina Chaparro-Pedraza, Jahnavi Joshi, Walter Salzburger, Bert Van Bocxlaer, Darko D Cotoras, Carmelo Fruciano, Anthony J Geneva, Rosemary Gillespie, Joseph Heras, Stephan Koblmüller, Blake Matthews, Renske E Onstein, Ole Seehausen, Pooja Singh, Erik I Svensson, David Salazar-Valenzuela, Maarten P M Vanhove, Guinevere O U Wogan, Ryo Yamaguchi, Anne D Yoder, José Cerca
Understanding the processes that drive phenotypic diversification and underpin speciation is key to elucidating how biodiversity has evolved. Although these processes have been studied across a wide array of clades, adaptive radiations (ARs), which are systems with multiple closely related species and broad phenotypic diversity, have been particularly fruitful for teasing apart the factors that drive and constrain diversification. As such, ARs have become popular candidate study systems for determining the extent to which ecological features, including aspects of organisms and the environment, and inter- and intraspecific interactions, led to evolutionary diversification...
May 1, 2024: Cold Spring Harbor Perspectives in Biology
https://read.qxmd.com/read/38692837/neotropics-as-a-cradle-for-adaptive-radiations
#3
JOURNAL ARTICLE
Juan E Guevara-Andino, Liliana M Dávalos, Felipe Zapata, María José Endara, Darko D Cotoras, Jaime Chaves, Santiago Claramunt, Julia López-Delgado, Angela M Mendoza-Henao, David Salazar-Valenzuela, Gonzalo Rivas-Torres, Justin Yeager
Neotropical ecosystems are renowned for numerous examples of adaptive radiation in both plants and animals resulting in high levels of biodiversity and endemism. However, we still lack a comprehensive review of the abiotic and biotic factors that contribute to these adaptive radiations. To fill this gap, we delve into the geological history of the region, including the role of tectonic events such as the Andean uplift, the formation of the Isthmus of Panama, and the emergence of the Guiana and Brazilian Shields...
May 1, 2024: Cold Spring Harbor Perspectives in Biology
https://read.qxmd.com/read/38692834/niche-theory-as-an-underutilized-resource-for-the-study-of-adaptive-radiations
#4
JOURNAL ARTICLE
Rachel M Germain, Blake Matthews, Luke Harmon
Biologists are often stuck between two opposing questions: Why are there so many species and why are there not more? Although these questions apply to the maintenance of existing species, they equally apply to the formation of new ones. The more species specialize in terms of their niches, the more opportunities arise for new species to form and coexist in communities. What sets an upper limit to specialization, thus setting an upper limit to speciation? We propose that MacArthur's theories of species packing and resource minimization may hold answers...
May 1, 2024: Cold Spring Harbor Perspectives in Biology
https://read.qxmd.com/read/38691218/cognitive-diagnostic-assessment-a-q-matrix-constraint-based-neural-network-method
#5
JOURNAL ARTICLE
Jinhong Tao, Wei Zhao, Yuliu Zhang, Qian Guo, Baocui Min, Xiaoqing Xu, Fengjuan Liu
Cognitive diagnosis is a crucial element of intelligent education that aims to assess the proficiency of specific skills or traits in students at a refined level and provide insights into their strengths and weaknesses for personalized learning. Researchers have developed numerous cognitive diagnostic models. However, previous studies indicate that diagnostic accuracy can be significantly influenced by the appropriateness of the model and the sample size. Thus, designing a general model that can adapt to different assumptions and sample sizes remains a considerable challenge...
April 30, 2024: Behavior Research Methods
https://read.qxmd.com/read/38690697/assessment-of-adaptability-and-linear-dimensional-changes-of-two-heat-cure-denture-base-resin-with-different-cooling-techniques-an-in-vitro-study
#6
JOURNAL ARTICLE
Karthik Kannaiyan, Aradhana Rathod, Purnendu Bhushan, Shilpa Mailankote, Turki Almuraikhi, Alhussain Daghriri
AIM: The current study was designed to assess the linear dimensional changes and adaptability of two heat-cured denture base resins using various cooling methods. MATERIALS AND METHODS: To prepare a total of 90 acrylic resin samples (45 acrylic resin samples for each material), four rectangular stainless-steel plates measuring 25 × 25 × 10 mm were fabricated. For both groups, the material was put into the mold at the dough stage. Group I - SR Triplex Hot Heat Cure acrylic; group II - DPI Heat Cure acrylic...
March 19, 2024: Journal of Contemporary Dental Practice
https://read.qxmd.com/read/38689698/haplotype-resolved-genome-of-prunus-zhengheensis-provides-insight-into-its-evolution-and-low-temperature-adaptation-in-apricot
#7
JOURNAL ARTICLE
Wei Tan, Pengyu Zhou, Xiao Huang, Ruyu Liao, Xiaoan Wang, Yaoyao Wu, Zhaojun Ni, Ting Shi, Xiaqing Yu, Huiqin Zhang, Chengdong Ma, Feng Gao, Yufan Ma, Yang Bai, Faisal Hayat, Ouma Kenneth Omondi, Daouda Coulibaly, Zhihong Gao
Prunus zhengheensis , an extremely rare population of apricots, originated in warm South-East China and is an excellent material for genetic breeding. However, most apricots and two related species ( P. sibirica , P . mandshurica ) are found in the cold northern regions in China and the mechanism of their distribution is still unclear. In addition, the classification status of P. zhengheensis is controversial. Thus, we generated a high-quality haplotype-resolved genome for P . zhengheensis , exploring key genetic variations in its adaptation and the causes of phylogenetic incongruence...
April 2024: Horticulture Research
https://read.qxmd.com/read/38688991/cold-shock-proteome-of-myoblasts-reveals-role-of-rbm3-in-promotion-of-mitochondrial-metabolism-and-myoblast-differentiation
#8
JOURNAL ARTICLE
Paulami Dey, Srujanika Rajalaxmi, Pushpita Saha, Purvi Singh Thakur, Maroof Athar Hashmi, Heera Lal, Nistha Saini, Nirpendra Singh, Arvind Ramanathan
Adaptation to hypothermia is important for skeletal muscle cells under physiological stress and is used for therapeutic hypothermia (mild hypothermia at 32  °C). We show that hypothermic preconditioning at 32  °C for 72 hours improves the differentiation of skeletal muscle myoblasts using both C2C12 and primary myoblasts isolated from 3 month and 18-month-old mice. We analyzed the cold-shock proteome of myoblasts exposed to hypothermia (32  °C for 6 and 48 h) and identified significant changes in pathways related to RNA processing and central carbon, fatty acid, and redox metabolism...
April 30, 2024: Communications Biology
https://read.qxmd.com/read/38688542/measuring-presynaptic-calcium-influx-at-the-drosophila-larval-neuromuscular-junction
#9
JOURNAL ARTICLE
Tingting Wang, C Andrew Frank
Synaptic transmission plays a critical role in information processing and storage within the nervous system. The triggering of action potentials activates voltage-gated calcium channels at presynaptic active zones, facilitating the calcium-dependent release of synaptic vesicles. Homeostatic mechanisms are crucial in stabilizing synaptic function. At the Drosophila neuromuscular junction, a compensatory increase in presynaptic neurotransmitter release occurs when postsynaptic glutamate receptor function is pharmacologically or genetically impaired, thereby stabilizing synaptic output...
April 30, 2024: Cold Spring Harbor Protocols
https://read.qxmd.com/read/38687776/from-struggle-to-strength-in-african-and-middle-eastern-newcomers-integration-stories-to-canada-a-participatory-health-equity-research-study
#10
JOURNAL ARTICLE
Maggie Fong, Amy Liu, Bryan Lung, Ibrahim Alayche, Shahab Sayfi, Ryan Yuhi Kirenga, Marie Hélène Chomienne, Ammar Saad, Jean Grenier, Azaad Kassam, Rukhsana Ahmed, Kevin Pottie
BACKGROUND AND OBJECTIVES: Newcomers (immigrants, refugees, and international students) face many personal, gender, cultural, environmental and health system barriers when integrating into a new society. These struggles can affect their health and social care, reducing access to mental health care. This study explores the lived experiences of African and Middle Eastern newcomers to Ontario, Canada. An understanding of newcomer integration challenges, successes and social justice issues is needed to improve health equity and social services...
2024: PloS One
https://read.qxmd.com/read/38686106/microbial-communities-are-thermally-more-sensitive-in-warm-climate-lizards-compared-with-their-cold-climate-counterparts
#11
JOURNAL ARTICLE
Xia-Ming Zhu, Jun-Qiong Chen, Yu Du, Chi-Xian Lin, Yan-Fu Qu, Long-Hui Lin, Xiang Ji
Environmental temperature affects the composition, structure, and function of the gut microbial communities in host animals. To elucidate the role of gut microbiota in thermal adaptation, we designed a 2 species × 3 temperatures experiment, whereby we acclimated adult males of two agamid lizard species (warm-climate Leiolepis reevesii and cold-climate Phrynocephalus przewalskii ) to 20, 28, and 36°C for 2 weeks and then collected their fecal and small-intestinal samples to analyze and compare the microbiota using 16S rRNA gene amplicon sequencing technology...
2024: Frontiers in Microbiology
https://read.qxmd.com/read/38685988/chemical-composition-and-digestible-and-metabolizable-energy-contents-in-cold-pressed-canola-expellers-fed-to-growing-pigs
#12
JOURNAL ARTICLE
Oluwakemi Y Omotosho, Bogdan A Slominski, Yanxing Niu, Charles M Nyachoti, Anna Rogiewicz
Cold-pressed canola expellers ( CPCE ) are a byproduct of canola oil production obtained using the pressing method without thermal and chemical treatment. While CPCE is a valuable source of dietary energy and protein in swine nutrition, the discrepancy in processing conditions leads to variability in the nutritional quality of CPCE from different sources. This study aimed to determine the chemical composition, and digestible energy ( DE ) and metabolizable energy ( ME ) values of CPCE when fed to growing pigs...
2024: Translational Animal Science
https://read.qxmd.com/read/38685963/cold-stress-induces-rapid-gene-specific-changes-in-the-levels-of-h3k4me3-and-h3k27me3-in-arabidopsis-thaliana
#13
JOURNAL ARTICLE
Léa Faivre, Nathalie-Francesca Kinscher, Ana Belén Kuhlmann, Xiaocai Xu, Kerstin Kaufmann, Daniel Schubert
When exposed to low temperatures, plants undergo a drastic reprogramming of their transcriptome in order to adapt to their new environmental conditions, which primes them for potential freezing temperatures. While the involvement of transcription factors in this process, termed cold acclimation, has been deeply investigated, the potential contribution of chromatin regulation remains largely unclear. A large proportion of cold-inducible genes carries the repressive mark histone 3 lysine 27 trimethylation (H3K27me3), which has been hypothesized as maintaining them in a silenced state in the absence of stress, but which would need to be removed or counteracted upon stress perception...
2024: Frontiers in Plant Science
https://read.qxmd.com/read/38683382/comparison-of-thermal-comfort-between-different-heating-systems-and-adaptation-to-different-indoor-climates-in-winter
#14
JOURNAL ARTICLE
Lianfei Zhuang, Jingxin Huang, Fengjuan Li, Ke Zhong
Individual heating systems, such as the air-source heat pump (ASHP) air-conditioner or floor heating (FH), are usually used by people living in the hot summer and cold winter (HSCW) zone of China to heat indoor climates in the winter. However, little research has been conducted in the HSCW zone on the thermal comfort difference between indoor climates heated by ASHP air-conditioners and those heated by floor heating, as well as how occupants adapt to different indoor climates. We conducted a comparative field experiment in ASHP-heated and FH-heated apartments in Nanjing to investigate how different types of heating systems influence the thermal sensation of occupants, and we conducted a comparative field experiment in ASHP-heated office buildings and naturally ventilated teaching buildings in Shanghai to investigate how occupants adapt to different indoor thermal environments...
April 29, 2024: International Journal of Biometeorology
https://read.qxmd.com/read/38682690/the-freeze-avoiding-mountain-pine-beetle-dendroctonus-ponderosae-survives-prolonged-exposure-to-stressful-cold-by-mitigating-ionoregulatory-collapse
#15
JOURNAL ARTICLE
Mads Kuhlmann Andersen, Amanda Diane Roe, Yuehong Liu, Antonia Musso, Serita Fudlosid, Fouzia Haider, Maya Evenden, Heath A MacMillan
Insect performance is linked to environmental temperature, and surviving through winter represents a key challenge for temperate, alpine, and polar species. To overwinter, insects have adapted a range of strategies to become truly cold hardy. However, while the mechanisms underlying the ability to avoid or tolerate freezing have been well-studied, little attention has been given to the challenge of maintaining ion homeostasis at frigid temperatures in these species, despite this limiting cold tolerance for insects susceptible to mild chilling...
April 29, 2024: Journal of Experimental Biology
https://read.qxmd.com/read/38678699/trehalose-enhanced-cold-atmospheric-plasma-mediated-cancer-treatment
#16
JOURNAL ARTICLE
Xiaona Cao, Tianxu Fang, Mo Chen, Tianqin Ning, Jianyu Li, Peter M Siegel, Morag Park, Zhitong Chen, Guojun Chen
Cold atmospheric plasma (CAP) is a unique form of physical plasma that has shown great potential for cancer therapy. CAP uses ionized gas to induce lethal oxidative stress on cancer cells; however, the efficacy of CAP therapy continues to be improved. Here, we report an injectable hydrogel-mediated approach to enhance the anti-tumor efficacy of CAP by regulating the phosphorylation of eIF2α. We discovered that reactive oxygen and nitrogen species (ROS/RNS), two main anti-tumor components in CAP, can lead to lethal oxidative stress on tumor cells...
April 18, 2024: Biomaterials
https://read.qxmd.com/read/38677604/study-on-the-estradiol-degradation-gene-expression-and-resistance-mechanism-of-rhodococcus-r-001-under-low-temperature-stress
#17
JOURNAL ARTICLE
Qing Qiu, Han Li, Xuejian Sun, Lili Zhang, Kejian Tian, Menghan Chang, Shuaiguo Li, Hongliang Huo
Estradiol (E2), an endocrine disruptor, acts by mimicking or interfering with the normal physiological functions of natural hormones within organisms, leading to issues such as endocrine system disruption. Notably, seasonal fluctuations in environmental temperature may influence the degradation speed of estradiol (E2) in the natural environment , intensifying its potential health and ecological risks. Therefore, this study aims to explore how bacteria can degrade E2 under low-temperature conditions, unveiling their resistance mechanisms, with the goal of developing new strategies to mitigate the threat of E2 to health and ecological safety...
April 25, 2024: Chemosphere
https://read.qxmd.com/read/38674464/jasmonates-promote-%C3%AE-amylase-mediated-starch-degradation-to-confer-cold-tolerance-in-tomato-plants
#18
JOURNAL ARTICLE
Xiulan Fan, Huanru Lin, Fei Ding, Meiling Wang
Cold stress severely restricts growth and development, reduces yields, and impairs quality in tomatoes ( Solanum lycopersicum ). Amylase-associated starch degradation and soluble sugar accumulation have been implicated in adaptation and resistance to abiotic stress. Here, we report a β-amylase (BAM) gene, SlBAM3 , which plays a central role in tomato cold tolerance. The expression of SlBAM3 was triggered by cold stress. SlBAM3 knockout using the CRISPR/Cas9 system retarded starch degradation and reduced soluble sugar accumulation in tomato plants, eventually attenuating cold tolerance...
April 9, 2024: Plants (Basel, Switzerland)
https://read.qxmd.com/read/38672745/blood-morphological-and-biochemical-indicator-characteristics-in-men-performing-different-physical-activities-in-the-cold-a-preliminary-report
#19
JOURNAL ARTICLE
Aneta Teległów, Wacław Mirek, Bartłomiej Ptaszek, Marcin Maciejczyk, Dorota Godawska, Jakub Marchewka
This descriptive study determined whether winter swimming (WS) and outdoor amateur running (RUN) affect blood morphological and biochemical indicators in men during midseason winter swimming from November to April. There were three groups of participants, with 10 male amateurs each: RUN + WS, WS, and control. The research was performed in the middle of the winter swimming season of 2020/2021. This time period was chosen in consideration of the respondents' adaptation to winter conditions. The study involved only 10 male amateurs in each study group owing to COVID-19 pandemic restrictions, which confined people to their homes...
April 4, 2024: Life
https://read.qxmd.com/read/38672394/genomic-inbreeding-and-runs-of-homozygosity-analysis-of-cashmere-goat
#20
JOURNAL ARTICLE
Qian Zhao, Chang Huang, Qian Chen, Yingxiao Su, Yanjun Zhang, Ruijun Wang, Rui Su, Huijuan Xu, Shucai Liu, Yuehui Ma, Qianjun Zhao, Shaohui Ye
Cashmere goats are valuable genetic resources which are famous worldwide for their high-quality fiber. Runs of homozygosity (ROHs) have been identified as an efficient tool to assess inbreeding level and identify related genes under selection. However, there is limited research on ROHs in cashmere goats. Therefore, we investigated the ROH pattern, assessed genomic inbreeding levels and examined the candidate genes associated with the cashmere trait using whole-genome resequencing data from 123 goats. Herein, the Inner Mongolia cashmere goat presented the lowest inbreeding coefficient of 0...
April 22, 2024: Animals: An Open Access Journal From MDPI
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