keyword
https://read.qxmd.com/read/38683891/complications-after-ankle-fracture-surgery-in-finland-between-1998-and-2020
#21
JOURNAL ARTICLE
Ville Happonen, Heikki Kröger, Reijo Sund
BACKGROUND: Ankle fracture is a common injury and often requires operative treatment. This study investigated short-term (≤4 months) and long-term (>4 months) complications after ankle fracture surgery in a 23-year period with use of data from a comprehensive, nationwide, individual-level register. METHODS: Data regarding patients who underwent operative treatment for ankle fracture were collected from the Finnish Care Register for Health Care and analyzed with use of logistic and Cox regression...
April 29, 2024: Journal of Bone and Joint Surgery. American Volume
https://read.qxmd.com/read/38683879/unnt-a-novel-utility-for-comparing-neural-net-and-tree-based-models
#22
JOURNAL ARTICLE
Vineeth Gutta, Satish Ranganathan Ganakammal, Sara Jones, Matthew Beyers, Sunita Chandrasekaran
The use of deep learning (DL) is steadily gaining traction in scientific challenges such as cancer research. Advances in enhanced data generation, machine learning algorithms, and compute infrastructure have led to an acceleration in the use of deep learning in various domains of cancer research such as drug response problems. In our study, we explored tree-based models to improve the accuracy of a single drug response model and demonstrate that tree-based models such as XGBoost (eXtreme Gradient Boosting) have advantages over deep learning models, such as a convolutional neural network (CNN), for single drug response problems...
April 29, 2024: PLoS Computational Biology
https://read.qxmd.com/read/38683878/bayesian-workflow-for-time-varying-transmission-in-stratified-compartmental-infectious-disease-transmission-models
#23
JOURNAL ARTICLE
Judith A Bouman, Anthony Hauser, Simon L Grimm, Martin Wohlfender, Samir Bhatt, Elizaveta Semenova, Andrew Gelman, Christian L Althaus, Julien Riou
Compartmental models that describe infectious disease transmission across subpopulations are central for assessing the impact of non-pharmaceutical interventions, behavioral changes and seasonal effects on the spread of respiratory infections. We present a Bayesian workflow for such models, including four features: (1) an adjustment for incomplete case ascertainment, (2) an adequate sampling distribution of laboratory-confirmed cases, (3) a flexible, time-varying transmission rate, and (4) a stratification by age group...
April 29, 2024: PLoS Computational Biology
https://read.qxmd.com/read/38683872/beware-of-atrial-pacing-induced-ventricular-depolarization-a-case-of-lead-malfunction
#24
Bailing Dai, Wenqing Yin, Chengming Ma, Peipei Ma, Yingqi Wang, Li Hong, Xiaohong Yu, Xiaomeng Yin, Yingxue Dong, Yunlong Xia, Yanzong Yang, Lianjun Gao
Although ventricular capture during the atrial threshold test is possible, there are rare reports on the insulation defect and inactive leads thereof. In this case, we present a pacemaker-dependent patient with a history of pacemaker generator replacements. The patient experienced ventricular capture induced by atrial pacing due to adhesion of the atrial and ventricular leads with an insulation defect. The atrial lead was abandoned and a new lead was implanted. However, there was a significant decrease in ventricular impedance detected shortly after the new lead was implanted...
April 29, 2024: Pacing and Clinical Electrophysiology: PACE
https://read.qxmd.com/read/38683871/kmeraperture-retaining-k-mer-synteny-for-alignment-free-extraction-of-core-and-accessory-differences-between-bacterial-genomes
#25
JOURNAL ARTICLE
Matthew P Moore, Mirjam Laager, Paolo Ribeca, Xavier Didelot
By decomposing genome sequences into k-mers, it is possible to estimate genome differences without alignment. Techniques such as k-mer minimisers, for example MinHash, have been developed and are often accurate approximations of distances based on full k-mer sets. These and other alignment-free methods avoid the large temporal and computational expense of alignment. However, these k-mer set comparisons are not entirely accurate within-species and can be completely inaccurate within-lineage. This is due, in part, to their inability to distinguish core polymorphism from accessory differences...
April 29, 2024: PLoS Genetics
https://read.qxmd.com/read/38683869/strain-prevalence-and-killer-factor-only-partially-influence-the-fermentation-activity-of-pairwise-saccharomyces-cerevisiae-wine-strains-inoculation
#26
JOURNAL ARTICLE
Jacopo Sica, Chiara Vendramini, Chiara Nadai, Zeno Molinelli, Milena Carlot, Alessio Giacomini, Viviana Corich
Commercial Saccharomyces cerevisiae starters are single-strain cultures widely used in winemaking to optimise the fermentation process and improve the organoleptic quality of wine. Unfortunately, the worldwide extensive use of a limited number of industrial strains led to the standardisation of the sensory properties, reducing the identity of wines. Therefore, the use of multi-strain S. cerevisiae starters can be an alternative tool to alter the sensory profile of wines, increasing the diversity of wine styles...
2024: PloS One
https://read.qxmd.com/read/38683864/predicting-the-presence-of-infectious-virus-from-pcr-data-a-meta-analysis-of-sars-cov-2-in-non-human-primates
#27
JOURNAL ARTICLE
Celine E Snedden, James O Lloyd-Smith
Researchers and clinicians often rely on molecular assays like PCR to identify and monitor viral infections, instead of the resource-prohibitive gold standard of viral culture. However, it remains unclear when (if ever) PCR measurements of viral load are reliable indicators of replicating or infectious virus. The recent popularity of PCR protocols targeting subgenomic RNA for SARS-CoV-2 has caused further confusion, as the relationships between subgenomic RNA and standard total RNA assays are incompletely characterized and opinions differ on which RNA type better predicts culture outcomes...
April 29, 2024: PLoS Pathogens
https://read.qxmd.com/read/38683863/informing-policy-via-dynamic-models-cholera-in-haiti
#28
JOURNAL ARTICLE
Jesse Wheeler, AnnaElaine Rosengart, Zhuoxun Jiang, Kevin Tan, Noah Treutle, Edward L Ionides
Public health decisions must be made about when and how to implement interventions to control an infectious disease epidemic. These decisions should be informed by data on the epidemic as well as current understanding about the transmission dynamics. Such decisions can be posed as statistical questions about scientifically motivated dynamic models. Thus, we encounter the methodological task of building credible, data-informed decisions based on stochastic, partially observed, nonlinear dynamic models. This necessitates addressing the tradeoff between biological fidelity and model simplicity, and the reality of misspecification for models at all levels of complexity...
April 29, 2024: PLoS Computational Biology
https://read.qxmd.com/read/38683857/wagers-for-work-decomposing-the-costs-of-cognitive-effort
#29
JOURNAL ARTICLE
Sarah L Master, Clayton E Curtis, Peter Dayan
Some aspects of cognition are more taxing than others. Accordingly, many people will avoid cognitively demanding tasks in favor of simpler alternatives. Which components of these tasks are costly, and how much, remains unknown. Here, we use a novel task design in which subjects request wages for completing cognitive tasks and a computational modeling procedure that decomposes their wages into the costs driving them. Using working memory as a test case, our approach revealed that gating new information into memory and protecting against interference are costly...
April 29, 2024: PLoS Computational Biology
https://read.qxmd.com/read/38683856/bacillus-subtilis-uses-the-sigm-signaling-pathway-to-prioritize-the-use-of-its-lipid-carrier-for-cell-wall-synthesis
#30
JOURNAL ARTICLE
Ian J Roney, David Z Rudner
Peptidoglycan (PG) and most surface glycopolymers and their modifications are built in the cytoplasm on the lipid carrier undecaprenyl phosphate (UndP). These lipid-linked precursors are then flipped across the membrane and polymerized or directly transferred to surface polymers, lipids, or proteins. Despite its essential role in envelope biogenesis, UndP is maintained at low levels in the cytoplasmic membrane. The mechanisms by which bacteria distribute this limited resource among competing pathways is currently unknown...
April 29, 2024: PLoS Biology
https://read.qxmd.com/read/38683855/measuring-effects-of-ivermectin-treated-cattle-on-potential-malaria-vectors-in-vietnam-a-cluster-randomized-trial
#31
JOURNAL ARTICLE
Estee Y Cramer, Xuan Quang Nguyen, Jeffrey C Hertz, Do Van Nguyen, Huynh Hong Quang, Ian H Mendenhall, Andrew A Lover
BACKGROUND: Malaria elimination using current tools has stalled in many areas. Ivermectin (IVM) is a broad-antiparasitic drug and mosquitocide and has been proposed as a tool for accelerating progress towards malaria elimination. Under laboratory conditions, IVM has been shown to reduce the survival of adult Anopheles populations that have fed on IVM-treated mammals. Treating cattle with IVM has been proposed as an important contribution to malaria vector management, however, the impacts of IVM in this One Health use case have been untested in field trials in Southeast Asia...
April 29, 2024: PLoS Neglected Tropical Diseases
https://read.qxmd.com/read/38683854/efficacy-and-safety-of-endoxifen-in-bipolar-disorder-a-systematic-review
#32
REVIEW
Jithin Thekkelkuthiyathottil Joseph, Rashmi Vishwanath, Samir Kumar Praharaj
BACKGROUND: Endoxifen, a protein kinase C inhibitor and selective estrogen receptor modulator, primarily used in breast cancer treatment, has recently emerged as a potential therapeutic option for managing manic episodes associated with bipolar disorder (BD). This review aims to assess the existing evidence base for endoxifen in BD treatment and evaluate the strengths and limitations of current research findings. METHODS: A systematic search was conducted on Medline, Embase, and Web of Science databases...
April 29, 2024: Human Psychopharmacology
https://read.qxmd.com/read/38683851/flight-safety-assessment-based-on-a-modified-human-error-risk-quantification-approach
#33
JOURNAL ARTICLE
Yundong Guo, Xinshi Suo
In risk and safety assessments of aviation systems, engineers generally pay more attention to the risks of hardware or software failure and focus less on the risks caused by human errors. In this paper, a (FRAHE) method is proposed for identifying this critical error type and determining the risk severity of human errors. This method accounts for the human error probability as well as the impacts of human errors on the system. The fuzzy inference approach is employed in this paper to address the uncertainty and issues of imprecision that arise from insufficient information and scarce error data and a risk assessment model of human error is developed...
2024: PloS One
https://read.qxmd.com/read/38683845/cd39-expression-by-regulatory-t-cells-participates-in-cd8-t-cell-suppression-during-experimental-trypanosoma-cruzi-infection
#34
JOURNAL ARTICLE
Cintia L Araujo Furlan, Santiago Boccardo, Constanza Rodriguez, Verónica S Mary, Camila M S Gimenez, Simon C Robson, Adriana Gruppi, Carolina L Montes, Eva V Acosta Rodríguez
An imbalance between suppressor and effector immune responses may preclude cure in chronic parasitic diseases. In the case of Trypanosoma cruzi infection, specialized regulatory Foxp3+ T (Treg) cells suppress protective type-1 effector responses. Herein, we investigated the kinetics and underlying mechanisms behind the regulation of protective parasite-specific CD8+ T cell immunity during acute T. cruzi infection. Using the DEREG mouse model, we found that Treg cells play a role during the initial stages after T...
April 29, 2024: PLoS Pathogens
https://read.qxmd.com/read/38683833/improving-care-pathways-for-children-with-severe-illness-through-implementation-of-the-aspire-mhealth-primary-etat-package-in-malawi
#35
JOURNAL ARTICLE
Nicola Desmond, Marc Y R Henrion, Mtisunge Gondwe, Thomasena O'Byrne, Pui-Ying Iroh Tam, Deborah Nyirenda, Louisa Pollock, Maureen Daisy Majamanda, Martha Makwero, Marije Geldof, Queen Dube, Chimwemwe Phiri, Chimwemwe Banda, Rabson Kachala, Prof Robert S Heyderman, Clemens Masesa, Norman Lufesi, David G Lalloo
Providing emergency care in low resource settings relies on delivery by lower cadres of health workers (LCHW). We describe the development, implementation and mixed methods evaluation of a mobile health (mHealth) triage algorithm based on the WHO Emergency, Triage, Assessment, and Treatment (ETAT) for primary-level care. We conducted an observational study design of implementation research. Key stakeholders were engaged throughout implementation. Clinicians and LCHW at eight primary health centres in Blantyre district were trained to use an mHealth algorithm for triage...
2024: PLOS Glob Public Health
https://read.qxmd.com/read/38683816/management-of-post-mohs-surgical-wounds-with-a-hypothermically-stored-amniotic-membrane-a-case-series
#36
JOURNAL ARTICLE
Daniel Kapp, Laura Pfendler
OBJECTIVE: The aim of this case series is to present an alternative approach to managing post-Mohs Micrographic Surgery (Mohs) wounds with hypothermically stored amniotic membrane (HSAM). METHOD: A case series of patients with post-Mohs wounds is presented, with four patients referred for hard-to-heal wounds following a Mohs procedure that was performed 1-3 months previously. All wounds underwent weekly assessment, debridement, and application of HSAM and secondary dressings...
May 1, 2024: Journal of Wound Care
https://read.qxmd.com/read/38683815/a-rare-presentation-of-rosai-dorfman-destombes-disease-with-central-nervous-system-involvement-and-cutaneous-wounds
#37
JOURNAL ARTICLE
Lauren Workman, Lauren Fang, Samar Ayoub, Karen Bach, Richard Simman
OBJECTIVE: The aim of this case report is to investigate an uncommon presentation of Rosai-Dorfman-Destombes (RDD) disease, and discuss possible differential diagnoses and treatment options for this pathology. RDD is a rare disorder of histiocytes that typically presents in patients as painless cervical lymphadenopathy. However, this case involves a patient with the central nervous system (CNS) type of RDD who later developed cutaneous lesions. METHOD: Several differential diagnoses were examined, including hidradenitis suppurativa, pilonidal cyst and pressure ulcers...
May 1, 2024: Journal of Wound Care
https://read.qxmd.com/read/38683810/research-on-sustainable-green-building-space-design-model-integrating-iot-technology
#38
JOURNAL ARTICLE
Yuchen Wang, Lu Liu
"How can the integration of Internet of Things (IoT) technology enhance the sustainability and efficiency of green building (G.B.) design?" is the central research question that this study attempts to answer. This investigation is important because it examines how green building and IoT technology can work together. It also provides important information about how to use contemporary technologies for environmental sustainability in the building sector. The paper examines a range of IoT applications in green buildings, focusing on this intersection...
2024: PloS One
https://read.qxmd.com/read/38683801/predicting-solvatochromism-of-chromophores-in-proteins-through-qm-mm-and-machine-learning
#39
JOURNAL ARTICLE
Amanda Arcidiacono, Edoardo Cignoni, Patrizia Mazzeo, Lorenzo Cupellini, Benedetta Mennucci
Solvatochromism occurs in both homogeneous solvents and more complex biological environments, such as proteins. While in both cases the solvatochromic effects report on the surroundings of the chromophore, their interpretation in proteins becomes more complicated not only because of structural effects induced by the protein pocket but also because the protein environment is highly anisotropic. This is particularly evident for highly conjugated and flexible molecules such as carotenoids, whose excitation energy is strongly dependent on both the geometry and the electrostatics of the environment...
April 29, 2024: Journal of Physical Chemistry. A
https://read.qxmd.com/read/38683797/influence-of-a-change-in-activity-regime-on-femoral-bone-architecture-and-failure-behaviour
#40
JOURNAL ARTICLE
Claire C Villette, Andrew T M Phillips
The incidence and morbidity of femoral fractures increases drastically with age. Femoral architecture and associated fracture risk are strongly influenced by loading during physical activities and it has been shown that the rate of loss of bone mineral density is significantly lower for active individuals than inactive. The objective of this work is to evaluate the impact of a cessation of some physical activities on elderly femoral structure and fracture behaviour. The authors previously established a biofidelic finite element model of the femur considered as a structure optimised to loading associated with daily activities...
2024: PloS One
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