keyword
https://read.qxmd.com/read/38680311/charge-based-isolation-of-extracellular-vesicles-from-human-plasma
#1
JOURNAL ARTICLE
Woojin Back, Minseo Bang, Jik-Han Jung, Ka-Won Kang, Byeong Hyeon Choi, Yeonho Choi, Sunghoi Hong, Hyun Koo Kim, Yong Park, Ji-Ho Park
Extracellular vesicles (EVs) have garnered significant attention due to their potential applications in disease diagnostics and management. However, the process of isolating EVs, primarily from blood samples, is still suboptimal. This is mainly attributed to the abundant nature of soluble proteins and lipoproteins, which are often separated together with EVs in the end products of conventional isolation methods. As such, we devise a single-step charge-based EV isolation method by utilizing positively charged beads to selectively remove negatively charged major impurities from human plasma via electrostatic interaction...
April 23, 2024: ACS Omega
https://read.qxmd.com/read/38679098/the-first-detection-of-mpox-virus-dna-from-wastewater-in-china
#2
JOURNAL ARTICLE
Jin Xu, Chao Liu, Qun Zhang, Haining Zhu, Feng Cui, Zhiqiang Zhao, Mingfang Song, Bo Zhou, Yunxiao Zhang, Peilong Hu, Lei Li, Qin Wang, Peng Wang
Wastewater monitoring may be a valuable early surveillance tool for studying mpox virus (MPXV) circulation in China, a country with high population density and very few mpox patients. To evaluate the effectiveness of wastewater monitoring for MPXV in detecting local hidden transmission of the epidemic in the early period, the Chinese Center for Disease Control and Prevention initiated a wastewater monitoring program for MPXV in China in July 2023. To enhance the monitoring sensitivity of the program, an MPXV monitoring point was established in a gathering place of high-risk mpox population...
April 26, 2024: Science of the Total Environment
https://read.qxmd.com/read/38677845/smartphone-based-device-for-rapid-and-single-step-detection-of-pirna-651-using-anti-dna-rna-hybrid-antibody-and-enzymatic-signal-amplification
#3
JOURNAL ARTICLE
Maliana El Aamri, Sabrine Baachaoui, Hasna Mohammadi, Noureddine Raouafi, Aziz Amine
P-element-induced wimpy testis (PIWI)-interacting RNAs (piRNAs/piRs) are a class of small noncoding RNAs that play a crucial role in regulating various biological processes, including carcinogenesis. One specific piRNA, piR-651, has been reported to be overexpressed in both human blood serum and solid cancer tissues, that can be used a viable biomarker in cancer diagnosis. Early diagnosis of cancer can help reduce the burden of the disease and improve survival rates. In the present work, we report for the first time a smartphone-based colorimetric biosensor for highly sensitive and specific detection of piR-651 thanks to an enzymatic signal amplification, which yielded high colorimetric intensities...
May 29, 2024: Analytica Chimica Acta
https://read.qxmd.com/read/38676806/analysis-of-protein-interactions-in-patient-derived-xenografts-using-immunoprecipitation
#4
JOURNAL ARTICLE
Hozaifa Metwally, Maha M Elbrashy
Proteins are large, complex molecules that regulate multiple functions within the cell. The protein rarely functions as a single molecule, but rather interacts with one or more other proteins forming a dynamic network. Protein-protein interactions are critical for regulating the cell's response toward various stimuli from outside and inside the cell. Identification of protein-protein interactions enhanced our understanding of various biological processes in the living cell. Immunoprecipitation (IP) has been one of the standard and most commonly used biochemical methods to identify and confirm protein-protein interactions...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38675539/rapid-apta-chromogenic-detection-method-for-nitrofuran-metabolite-determination
#5
JOURNAL ARTICLE
Navarat Chaisri, Chutikarn Jaengphop, Ikuo Hirono, Sasimanas Unajak
Nitrofuran (NF) contamination in food products is a global problem resulting in the banned utilization and importation of nitrofuran contaminated products. A novel chromogenic detection method using a specific DNA aptamer with high affinity and specificity to nitrofurans was developed. Single-stranded DNA aptamers specific to nitrofuran metabolites, including 3-amino-2-oxazolidinone (AOZ), 3-amino-5-methylmorpholino-2-oxazolidinone (AMOZ), and 1-aminohydantoin (AHD), were isolated using magnetic bead-SELEX...
April 10, 2024: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://read.qxmd.com/read/38673137/exploring-the-potential-application-of-an-innovative-post-weld-finishing-method-in-butt-welded-joints-of-stainless-steels-and-aluminum-alloys
#6
JOURNAL ARTICLE
Olga Łastowska, Robert Starosta, Monika Jabłońska, Andrzej Kubit
The prerequisite of the weld bead finishing is intricately linked to the quality of the welded joint. It constitutes the final, yet pivotal, stage in its formation, significantly influencing the reliability of structural components and machines. This article delineates an innovative post-weld surface finishing method, distinguished by the movement of a specialized cutting tool along a butt weld. This method stands out due to its singular approach to machining allowance, wherein the weld bead height is considered and eradicated in a single pass of the cutting tool...
April 12, 2024: Materials
https://read.qxmd.com/read/38669207/programmable-rna-loading-of-extracellular-vesicles-with-toehold-release-purification
#7
JOURNAL ARTICLE
Mette Galsgaard Malle, Ping Song, Philipp M G Löffler, Nazmie Kalisi, Yan Yan, Julián Valero, Stefan Vogel, Jørgen Kjems
Synthetic nanoparticles as lipid nanoparticles (LNPs) are widely used as drug delivery vesicles. However, they hold several drawbacks, including low biocompatibility and unfavorable immune responses. Naturally occurring extracellular vesicles (EVs) hold the potential as native, safe, and multifunctional nanovesicle carriers. However, loading of EVs with large biomolecules remains a challenge. Here, we present a controlled loading methodology using DNA-mediated and programmed fusion between EVs and messenger RNA (mRNA)-loaded liposomes...
April 26, 2024: Journal of the American Chemical Society
https://read.qxmd.com/read/38667605/debridement-antibiotic-pearls-and-retention-of-the-implant-dapri-in-the-treatment-of-early-periprosthetic-knee-joint-infections-a-literature-review
#8
REVIEW
Giovanni Vicenti, Elisa Pesare, Giulia Colasuonno, Claudio Buono, Federica Albano, Teresa Ladogana, Anna Claudia Passarelli, Giuseppe Solarino
(1) Background: Periprosthetic joint infections (PJIs) are severe and frightening complications in orthopaedic surgery, and they are generally divided into three categories: early infections (those occurring within the first 4-6 weeks), delayed infections (those occurring between 3 and 24 months), and late infections (those occurring more than 2 years after surgery). PJI treatment comprises "debridement, antibiotics, and implant retention" (DAIR), single-stage revision, and double-stage revision. Nowadays, to improve the chances of retaining an infected implant and to improve the traditional DAIR method, a modified surgical technique has been developed, named DAPRI (debridement, antibiotic pearls, and retention of the implant)...
April 16, 2024: Healthcare (Basel, Switzerland)
https://read.qxmd.com/read/38667389/one-new-genus-and-four-new-species-of-beaded-lacewings-neuroptera-berothidae-from-upper-cretaceous-myanmar-amber
#9
JOURNAL ARTICLE
Yuting Chen, Zihao Peng, Siting Liu, Chaofan Shi, Dong Ren, Qiang Yang
In recent years, as more and more fossil species of berothids from Myanmar have been reported, the species and morphological diversity of Berothidae continues to increase. Herein, one new species of Berothidae, Aggregataberotha paucipunctata sp. nov., and one new genus, Sejunctaberotha gen. nov., with three new species ( Sejunctaberotha sphaerica gen. et sp. nov., Sejunctaberotha tenuis gen. et sp. nov. and Sejunctaberotha transversa gen. et sp. nov.) are described from mid-Cretaceous Myanmar amber. A. paucipunctata sp...
April 9, 2024: Insects
https://read.qxmd.com/read/38667197/optimizing-microfluidic-impedance-cytometry-by-bypass-electrode-layout-design
#10
JOURNAL ARTICLE
Guangzu Wu, Zhiwei Zhang, Manman Du, Dan Wu, Junting Zhou, Tianteng Hao, Xinwu Xie
Microfluidic impedance cytometry (MIC) has emerged as a popular technique for single-cell analysis. Traditional MIC electrode designs consist of a pair of (or three) working electrodes, and their detection performance needs further improvements for microorganisms. In this study, we designed an 8-electrode MIC device in which the center pair was defined as the working electrode, and the connection status of bypass electrodes could be changed. This allowed us to compare the performance of layouts with no bypasses and those with floating or grounding electrodes by simulation and experiment...
April 19, 2024: Biosensors
https://read.qxmd.com/read/38665812/deep-learning-assisted-concentration-gradient-generation-for-the-study-of-3d-cell-cultures-in-hydrogel-beads-of-varying-stiffness
#11
JOURNAL ARTICLE
Vasileios Anagnostidis, Anuj Tiwari, Fabrice Gielen
The study of dose-response relationships underpins analytical biosciences. Droplet microfluidics platforms can automate the generation of microreactors encapsulating varying concentrations of an assay component, providing datasets across a large chemical space in a single experiment. A classical method consists in varying the flow rate of multiple solutions co-flowing into a single microchannel (producing different volume fractions) before encapsulating the contents into water-in-oil droplets. This process can be automated through controlling the pumping elements but lacks the ability to adapt to unpredictable experimental scenarios, often requiring constant human supervision...
2024: Frontiers in Bioengineering and Biotechnology
https://read.qxmd.com/read/38656722/synthesis-of-fenugreek-gum-based-metal-organic-framework-fg-zr-aipa-mof-composite-beads-for-sequestration-of-heavy-metal-ions-from-aqueous-solution
#12
JOURNAL ARTICLE
Asmita De, Sumit Mishra
Metal-organic frameworks (MOFs) are a prominent class of materials due to their large surface area and customized structures. This gives them specificity and high adsorption capacity while they lack mechanical strength and reusability. Integrating MOFs with polysaccharide matrix may retain MOF characteristics along with imparting structural integrity. In the present study, zirconium MOF-based fenugreek composite (FG/Zr-AIPA) beads were synthesised by a single droplet method and utilised for removal of Cr(VI), Pb(II) and Fe(III) from aqueous solution...
April 24, 2024: Environmental Science and Pollution Research International
https://read.qxmd.com/read/38656439/collapse-and-expansion-kinetics-of-a-single-polyelectrolyte-chain-with-hydrodynamic-interactions
#13
JOURNAL ARTICLE
Jiaxing Yuan, Tine Curk
We investigate the collapse and expansion dynamics of a linear polyelectrolyte (PE) with hydrodynamic interactions. Using dissipative particle dynamics with a bead-spring PE model, long-range electrostatics, and explicit ions, we examine how the timescales of collapse tcol and expansion texp depend on the chain length N and obtain scaling relationships tcol ∼ Nα and texp ∼ Nβ. For neutral polymers, we derive values of α = 0.94 ± 0.01 and β = 1.97 ± 0.10. Interestingly, the introduction of electrostatic interaction markedly shifts α to α ≈ 1...
April 28, 2024: Journal of Chemical Physics
https://read.qxmd.com/read/38647382/separating-the-wheat-from-the-chaff-among-hla-dq-eplets
#14
JOURNAL ARTICLE
Magali Devriese, François A Lemonnier, Julien Lion, Caroline Sayegh, Emma Fleury, Catherine Shofstall, Lisa Giraldo, Quentin Fiachetti, Cédric Usureau, Hiroko Miyadera, Olivier Toutirais, Nuala Mooney, Dave Lowe, Jean-Luc Taupin
In transplantation, anti-HLA Abs, especially targeting the DQ locus, are well-known to lead to rejection. These Abs identified by Luminex single Ag assays recognize polymorphic amino acids on HLA, named eplets. The HLA Eplet Registry included 83 DQ eplets, mainly deduced from amino acid sequence alignments, among which 66 have not been experimentally verified. Because eplet mismatch load may improve organ allocation and transplant outcomes, it is imperative to confirm the genuine reactivity of eplets to validate this approach...
April 22, 2024: Journal of Immunology
https://read.qxmd.com/read/38646525/memory-b-cell-derived-donor-specific-antibodies-do-not-predict-outcome-in-sensitized-kidney-transplant-recipients-a-retrospective-single-center-study
#15
JOURNAL ARTICLE
Dania Altulea, Joost C van den Born, Arjan Diepstra, Laura Bungener, Dagmar Terpstra, Bouke G Hepkema, Rosa Lammerts, Peter Heeringa, Sebastiaan Heidt, Henny Otten, Leon Reteig, Gonca E Karahan, Stefan P Berger, Jan-Stephan Sanders
BACKGROUND: Repeated exposure to sensitizing events can activate HLA-specific memory B cells, leading to the production of donor-specific memory B cell antibodies (DSAm) that pose a risk for antibody-mediated rejection (ABMR) in kidney transplant recipients (KTRs). This single-center retrospective study aimed to identify DSAm and assess their association with outcomes in a cohort of KTRs with pretransplant serum donor-specific antibodies (DSA). METHODS: We polyclonally activated pretransplant peripheral blood mononuclear cells (PBMCs) from 60 KTRs in vitro, isolated and quantified IgG from the culture supernatant using ELISA, and analyzed the HLA antibodies of eluates with single antigen bead (SAB) assays, comparing them to the donor HLA typing for potential DSAm...
2024: Frontiers in Immunology
https://read.qxmd.com/read/38645306/magnetically-functionalized-hydrogels-for-high-throughput-genomic-applications
#16
JOURNAL ARTICLE
Evan Lammertse, Siran Li, Jude Kendall, Catherine Kim, Patrick Morris, Nissim Ranade, Dan Levy, Michael Wigler, Eric Brouzes
Single-cell genomics has revolutionized tissue analysis by revealing the genetic program of individual cells. The key aspect of the technology is the use of barcoded beads to unambiguously tag sequences originating from a single cell. The generation of unique barcodes on beads is mainly achieved by split-pooling methods, which are labor-intensive due to repeated washing steps. Towards the automation of the split-pooling method, we developed a simple method to magnetize hydrogel beads. We show that these hydrogel beads provide increased yields and washing efficiencies for purification procedures...
January 22, 2024: Advanced Materials Technologies
https://read.qxmd.com/read/38644063/design-and-validation-of-functionalized-redox-responsive-hydrogel-beads-for-high-throughput-screening-of-antibody-secreting-mammalian-cells
#17
JOURNAL ARTICLE
Diah Anggraini Wulandari, Kyosuke Tsuru, Kosuke Minamihata, Rie Wakabayashi, Go Egami, Yoshinori Kawabe, Masamichi Kamihira, Masahiro Goto, Noriho Kamiya
Antibody drugs play a vital role in diagnostics and therapy. However, producing antibodies from mammalian cells is challenging owing to cellular heterogeneity, which can be addressed by applying droplet-based microfluidic platforms for high-throughput screening (HTS). Here, we designed an integrated system based on disulfide-bonded redox-responsive hydrogel beads (redox-HBs), which were prepared through enzymatic hydrogelation, to compartmentalize, screen, select, retrieve, and recover selected Chinese hamster ovary (CHO) cells secreting high levels of antibodies...
April 20, 2024: Journal of Bioscience and Bioengineering
https://read.qxmd.com/read/38637869/exploring-the-immunological-relevance-of-pre-transplant-donor-specific-antibody-in-intestinal-transplantation-with-special-consideration-to-the-liver
#18
JOURNAL ARTICLE
Rhea McArdle, Rebecca Cope, Afzal Chaudhry, Lisa Sharkey, Sarah Peacock
Despite recent advances that have improved outcomes following intestinal transplantation (ITx), achieving long-term patient survival and rejection-free survival is still challenging. Understanding the relevance of pre-transplant human leukocyte antigen (HLA) donor-specific antibody (DSA) in ITx and the immunomodulatory potential of the liver within the allograft is crucial to providing an accurate assessment of pre-transplant immunological risk, which could influence and improve post-transplant outcomes further...
April 18, 2024: International Journal of Immunogenetics
https://read.qxmd.com/read/38635042/purification-of-dna-nanoparticles-using-photocleavable-biotin-tethers
#19
JOURNAL ARTICLE
Heather R Everson, Kayla Neyra, Dylan V Scarton, Soumya Chandrasekhar, Christopher M Green, Thorsten-Lars Schmidt, Igor L Medintz, Remi Veneziano, Divita Mathur
The number of applications of self-assembled deoxyribonucleic acid (DNA) origami nanoparticles (DNA NPs) has increased drastically, following the development of a variety of single-stranded template DNA (ssDNA) that can serve as the scaffold strand. In addition to viral genomes, such as M13 bacteriophage and lambda DNAs, enzymatically produced ssDNA from various template sources is rapidly gaining traction and being applied as the scaffold for DNA NP preparation. However, separating fully formed DNA NPs that have custom scaffolds from crude assembly mixes is often a multistep process of first separating the ssDNA scaffold from its enzymatic amplification process and then isolating the assembled DNA NPs from excess precursor strands...
April 18, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38634684/high-precision-screening-and-sorting-of-double-emulsion-droplets
#20
JOURNAL ARTICLE
Siyuan Zhuang, Lucie Semenec, Stephanie S Nagy, Amy K Cain, David W Inglis
Mounting evidence suggests that cell populations are extremely heterogeneous, with individual cells fulfilling different roles within the population. Flow cytometry (FC) is a high-throughput tool for single-cell analysis that works at high optical resolution. Sub-populations with unique properties can be screened, isolated and sorted through fluorescence-activated cell sorting (FACS), using intracellular fluorescent products or surface-tagged fluorescent products of interest. However, traditional FC and FACS methods cannot identify or isolate cells that secrete extracellular products of interest...
April 18, 2024: Cytometry. Part A: the Journal of the International Society for Analytical Cytology
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