keyword
https://read.qxmd.com/read/38682182/multi-omics-pan-cancer-analysis-of-procollagen-n-propeptidase-gene-family-of-adamts-as-novel-biomarkers-to-associate-with-prognosis-tumor-immune-microenvironment-signaling-pathways-and-drug-sensitivities
#1
JOURNAL ARTICLE
Yuxing Chen, Chaoyu Xiao, Qingxin Fan, Ye Zhang, Qiu Huang, Yunsheng Ou
BACKGROUND: The extracellular matrix (ECM) modeling induced by the metalloproteinases is a vital characteristic for tumor progression. Previous studies mainly focus on the functions of two subgroups of metalloproteinases: matrix metalloproteinases (MMPs) and a disintegrin and metalloproteases (ADAMs) in tumors. The roles of another important group: the ADAMs with thrombospondin motifs (ADAMTS) remain unclear. This study aimed to perform a pan-cancer analysis of procollagen N-propeptidase subgroup of ADAMTS (PNPSA)...
April 12, 2024: Frontiers in Bioscience (Landmark Edition)
https://read.qxmd.com/read/38682020/igf2bp2-modulates-autophagy-and-serves-as-a-prognostic-marker-in-glioma
#2
JOURNAL ARTICLE
Ning Li, Limei Deng, Yuming Zhang, Xilian Tang, Bingxi Lei, Qingyu Zhang
Glioma, a malignant brain tumor originating from neural glial cells, presents significant treatment challenges. However, the underlying mechanisms of glioma development are not fully understood, and effective targets are lacking. This study provides insights into the role of insulin-like growth factor 2 messenger RNA-binding protein 2 (IGF2BP2) in glioma progression and its therapeutic potential. Our analysis illustrated that elevated IGF2BP2 expression associated with significantly shorter survival among patients with low-grade glioma (LGG) in The Cancer Genome Atlas (TCGA) database...
2024: Ibrain
https://read.qxmd.com/read/38674738/molecular-mechanisms-of-lacticaseibacillus-rhamnosus-lgg-%C3%A2-probiotic-function
#3
REVIEW
Thomas Leser, Adam Baker
To advance probiotic research, a comprehensive understanding of bacterial interactions with human physiology at the molecular and cellular levels is fundamental. Lacticaseibacillus rhamnosus LGG® is a bacterial strain that has long been recognized for its beneficial effects on human health. Probiotic effector molecules derived from LGG® , including secreted proteins, surface-anchored proteins, polysaccharides, and lipoteichoic acids, which interact with host physiological processes have been identified...
April 14, 2024: Microorganisms
https://read.qxmd.com/read/38674418/lncrna-ndufa6-dt-a-comprehensive-analysis-of-a-potential-lncrna-biomarker-and-its-regulatory-mechanisms-in-gliomas
#4
JOURNAL ARTICLE
Ruiting Huang, Ying Kong, Zhiqing Luo, Quhuan Li
Gliomas are the most prevalent primary malignant tumors affecting the brain, with high recurrence and mortality rates. Accurate diagnoses and effective treatment challenges persist, emphasizing the need for identifying new biomarkers to guide clinical decisions. Long noncoding RNAs (lncRNAs) hold potential as diagnostic and therapeutic biomarkers in cancer. However, only a limited subset of lncRNAs in gliomas have been explored. Therefore, this study aims to identify lncRNA signatures applicable to patients with gliomas across all grades and explore their clinical significance and potential biological mechanisms...
April 11, 2024: Genes
https://read.qxmd.com/read/38669708/evaluation-of-the-extent-of-resection-of-intracranial-tumors-with-virtual-intraoperative-mri-a-case-series
#5
JOURNAL ARTICLE
Edoardo Mazzucchi, Lara Belis Cavlak, Fabrizio Pignotti, Giuseppe La Rocca, Davide Cusumano, Pierluigi Rinaldi, Alessandro Olivi, Giovanni Sabatino
OBJECTIVE: Intraoperative MRI (iMRI) is the gold-standard technique for intraoperative evaluation of the extent of resection in brain tumor surgery. Unfortunately, it is currently available at only a few neurosurgical centers. A commercially available software, Virtual iMRI Cranial, provides an elastic fusion between preoperative MRI and intraoperative CT (iCT). The aim of this study was to evaluate the accuracy of this software in determining the presence of residual tumor. METHODS: Virtual iMRI was performed in patients who underwent iCT after intracranial tumor resection...
April 26, 2024: Journal of Neurosurgery
https://read.qxmd.com/read/38669700/longitudinal-brain-volumetrics-in-glioma-survivors
#6
JOURNAL ARTICLE
Andrew M McDonald, Donna L Murdaugh, Katherine A Heinzman, Rex A Cardan, Jessica Jacob, John B Fiveash, L Burt Nabors, Courtney A Cooper, John M Hoyle, Desmin Milner, Carlos E Cardenas
OBJECTIVE: Radiation therapy (RT) is used selectively for patients with low-grade glioma (LGG) given the concerns for potential cognitive effects in survivors, but prior cognitive outcome studies among LGG survivors have had inconsistent findings. Translational studies that characterize changes in brain anatomy and physiology after treatment of LGG may help to both contextualize cognitive findings and improve the overall understanding of radiation effects in normal brain tissue. This study aimed to investigate the hypothesis that patients with LGG who are treated with RT will experience greater brain volume loss than those who do not receive RT...
April 26, 2024: Journal of Neurosurgery
https://read.qxmd.com/read/38658591/a-multi-omics-analysis-based-model-to-predict-the-prognosis-of-low-grade-gliomas
#7
JOURNAL ARTICLE
Zhijie Du, Yuehui Jiang, Yueling Yang, Xiaoyu Kang, Jing Yan, Baorui Liu, Mi Yang
Lower-grade gliomas (LGGs) exhibit highly variable clinical behaviors, while classic histology characteristics cannot accurately reflect the authentic biological behaviors, clinical outcomes, and prognosis of LGGs. In this study, we carried out analyses of whole exome sequencing, RNA sequencing and DNA methylation in primary vs. recurrent LGG samples, and also combined the multi-omics data to construct a prognostic prediction model. TCGA-LGG dataset was searched for LGG samples. 523 samples were used for whole exome sequencing analysis, 532 for transcriptional analysis, and 529 for DNA methylation analysis...
April 24, 2024: Scientific Reports
https://read.qxmd.com/read/38650572/evaluating-the-predictive-value-of-a-coagulation-related-gene-model-in-glioma
#8
JOURNAL ARTICLE
Ming Cao, Jie Chen, Rong-Zeng Guo
AIM: The prognosis of glioma, which is the most common and malignant tumor in the central nervous system, requires the identification of additional markers. MATERIAL AND METHODS: The mRNA expression and clinical data of glioma were downloaded from the TCGA and CGGA databases. Coagulation-related genes were downloaded from the KEGG database. The expression model was constructed using LASSO regression. The GBM data were divided into high and low-risk expression groups based on the median risk score, and the differences in overall survival and progression-free survival between them were calculated...
December 16, 2023: Turkish Neurosurgery
https://read.qxmd.com/read/38649484/dosimetric-comparison-of-advanced-radiation-techniques-for-scalp-sparing-in-low-grade-gliomas
#9
JOURNAL ARTICLE
Hang Yu, Shuangshuang He, Yisong He, Guyu Dai, Yuchuan Fu, Xianhu Zeng, Mengyuan Liu, Ping Ai
BACKGROUND: Alopecia causes significant distress for patients and negatively impacts quality of life for low-grade glioma (LGG) patients. We aimed to compare and evaluate variations in dose distribution for scalp-sparing in LGG patients with proton therapy and photon therapy, namely intensity-modulated proton therapy (IMPT), intensity-modulated radiotherapy (IMRT), volumetric modulated arc therapy (VMAT), and helical tomotherapy (HT). METHODS: This retrospective study utilized a dataset comprising imaging data from 22 patients with LGG who underwent postoperative radiotherapy...
April 22, 2024: Strahlentherapie und Onkologie: Organ der Deutschen Röntgengesellschaft ... [et Al]
https://read.qxmd.com/read/38642150/effects-of-p-coumaric-acid-on-probiotic-properties-of-lactobacillus-acidophilus-la-5-and-lacticaseibacillus-rhamnosus-gg
#10
JOURNAL ARTICLE
Buse Nur Derebasi, Sena Davran Bulut, Busra Aksoy Erden, Nastaran Sadeghian, Parham Taslimi, Hasan Ufuk Celebioglu
Probiotics are defined as "live microorganisms that provide health benefits to the host when administered in adequate amounts." Probiotics have beneficial effects on human health, including antibacterial activity against intestinal pathogens, regulation of blood cholesterol levels, reduction of colitis and inflammation incidence, regulation of the immune system, and prevention of colon cancer. In addition to probiotic bacteria, some phenolic compounds found in foods we consume (both food and beverages) have positive effects on human health...
April 20, 2024: Archives of Microbiology
https://read.qxmd.com/read/38641207/lactobacillus-rhamnosus-gg-stimulates-dietary-tryptophan-dependent-production-of-barrier-protecting-methylnicotinamide
#11
JOURNAL ARTICLE
Panan Suntornsaratoon, Jayson M Antonio, Juan Flores, Ravij Upadhyay, John Veltri, Sheila Bandyopadhyay, Rhema Dadala, Michael Kim, Yue Liu, Iyshwarya Balasubramanian, Jerrold R Turner, Xiaoyang Su, Wei Vivian Li, Nan Gao, Ronaldo P Ferraris
BACKGROUND & AIMS: Lacticaseibacillus rhamnosus GG (LGG) is the world's most consumed probiotic but its mechanism of action on intestinal permeability and differentiation along with its interactions with an essential source of signaling metabolites, dietary tryptophan, are unclear. METHODS: Untargeted metabolomic and transcriptomic analyses were performed in LGG mono-colonized germ-free (GF) mice fed tryptophan (trp)-free or -sufficient diets. LGG-derived metabolites were profiled in vitro under anaerobic and aerobic conditions...
April 17, 2024: Cellular and Molecular Gastroenterology and Hepatology
https://read.qxmd.com/read/38633066/brain-tumor-grading-diagnosis-using-transfer-learning-based-on-optical-coherence-tomography
#12
JOURNAL ARTICLE
Sanford P C Hsu, Miao-Hui Lin, Chun-Fu Lin, Tien-Yu Hsiao, Yi-Min Wang, Chia-Wei Sun
In neurosurgery, accurately identifying brain tumor tissue is vital for reducing recurrence. Current imaging techniques have limitations, prompting the exploration of alternative methods. This study validated a binary hierarchical classification of brain tissues: normal tissue, primary central nervous system lymphoma (PCNSL), high-grade glioma (HGG), and low-grade glioma (LGG) using transfer learning. Tumor specimens were measured with optical coherence tomography (OCT), and a MobileNetV2 pre-trained model was employed for classification...
April 1, 2024: Biomedical Optics Express
https://read.qxmd.com/read/38628893/grading-of-gliomas-by-contrast-enhanced-ct-radiomics-features
#13
JOURNAL ARTICLE
Mohammad Maskani, Samaneh Abbasi, Hamidreza Etemad-Rezaee, Hamid Abdolahi, Amir Zamanpour, Alireza Montazerabadi
BACKGROUND: Gliomas, as Central Nervous System (CNS) tumors, are greatly common with 80% of malignancy. Treatment methods for gliomas, such as surgery, radiation therapy, and chemotherapy depend on the grade, size, location, and the patient's age. OBJECTIVE: This study aimed to quantify glioma based on the radiomics analysis and classify its grade into High-grade Glioma (HGG) or Low-grade Glioma (LGG) by various machine-learning methods using contrast-enhanced brain Computerized Tomography (CT) scans...
April 2024: Journal of Biomedical Physics & Engineering
https://read.qxmd.com/read/38623929/a-systematic-review-of-the-beneficial-effects-of-prebiotics-probiotics-and-synbiotics-on-adhd
#14
REVIEW
Pooneh Allahyari, Saheb Abbas Torki, Bahareh Aminnezhad Kavkani, Zahra Mahmoudi, Mohadeseh Sadat Mousavi Hoseini, Mahdi Moradi, Farkhondeh Alami, Mohammad Keshavarz Mohammadian, Samira Bahoo Sele Bani, Khadijeh Abbasi Mobarakeh, Hanieh Shafaei, Sara Khoshdooz, Azadeh Hajipour, Saeid Doaei, Maryam Gholamalizadeh
BACKGROUND: Children with attention deficit hyperactivity disorder (ADHD) may benefit from probiotics and prebiotics, but the effects are unclear. To determine whether probiotics and prebiotics affect children with ADHD, a systematic review was conducted. METHODS: The present systematic review analyzed cohort studies and randomized controlled trials that examined whether prebiotics and probiotics are associated with ADHD. Seven randomized controlled trials and two cohort studies met our inclusion criteria...
April 16, 2024: Neuropsychopharmacology Reports
https://read.qxmd.com/read/38623558/identification-of-lower-grade-glioma-antigens-based-on-ferroptosis-status-for-mrna-vaccine-development
#15
JOURNAL ARTICLE
Zhenxiang Zhao, Na Xing, Hao Guo, Jianfeng Li, Guozhu Sun
PURPOSE: mRNA vaccines represent a promising and innovative strategy within the realm of cancer immunotherapy. However, their efficacy in treating lower-grade glioma (LGG) requires evaluation. Ferroptosis exhibits close associations with the initiation, evolution, and suppression of cancer. In this study, we explored the landscape of the ferroptosis-associated tumor microenvironment to facilitate the development of mRNA vaccines for LGG patients. PATIENTS AND METHODS: Genomic and clinical data of the LGG patients was obtained from the Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) databases...
2024: Pharmacogenomics and Personalized Medicine
https://read.qxmd.com/read/38610968/an-mri-radiomics-approach-to-predict-the-hypercoagulable-status-of-gliomas
#16
JOURNAL ARTICLE
Zuzana Saidak, Adrien Laville, Simon Soudet, Marie-Antoinette Sevestre, Jean-Marc Constans, Antoine Galmiche
Venous thromboembolic events are frequent complications of Glioblastoma Multiforme (GBM) and low-grade gliomas (LGGs). The overexpression of tissue factor (TF) plays an essential role in the local hypercoagulable phenotype that underlies these complications. Our aim was to build an MRI radiomics model for the non-invasive exploration of the hypercoagulable status of LGG/GBM. Radiogenomics data from The Cancer Genome Atlas (TCGA) and REMBRANDT (Repository for molecular BRAin Neoplasia DaTa) cohorts were used...
March 26, 2024: Cancers
https://read.qxmd.com/read/38605349/esco2-s-oncogenic-role-in-human-tumors-a-pan-cancer-analysis-and-experimental-validation
#17
JOURNAL ARTICLE
Yue Huang, Dapeng Chen, Yi Bai, Yamin Zhang, Zhiwen Zheng, Qingfeng Fu, Bocun Yi, Yuchen Jiang, Zhihong Zhang, Jianqiang Zhu
PURPOSE: Establishment of sister chromatid cohesion N-acetyltransferase 2 (ESCO2) is involved in the mitotic S-phase adhesins acetylation and is responsible for bridging two sister chromatids. However, present ESCO2 cancer research is limited to a few cancers. No systematic pan-cancer analysis has been conducted to investigate its role in diagnosis, prognosis, and effector function. METHODS: We thoroughly examined the ESCO2 carcinogenesis in pan-cancer by combining public databases such as The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project (GTEx), UALCAN and Tumor Immune Single-cell Hub (TISCH)...
April 11, 2024: BMC Cancer
https://read.qxmd.com/read/38603834/identification-and-validation-of-anoikis-related-genes-to-clarify-the-prognosis-and-immune-mechanisms-of-patients-with-low-grade-glioma
#18
JOURNAL ARTICLE
Ji Wang, Yantin Liu, Min Qian, Wen Xu, Jianfeng Chen, Yuanguo Deng, Ran Luo, Jian Chen, Wenxue Jia, Longhu Liu, Chunlei Tian
BACKGROUND: Low-grade glioma (LGG) has an extremely poor prognosis, and the mechanism leading to malignant development has not been determined. The aim of our study was to clarify the function and mechanism of anoikis and TIMP1 in the malignant progression of LGG. METHODS: We screened 7 anoikis-related genes from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases to construct a prognostic-predicting model. The study assessed the clinical prognosis, pathological characteristics, and immune cell infiltration in both high- and low-risk groups...
April 5, 2024: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/38601024/editorial-cns-tumor-metabolism-targets-markers-and-challenges
#19
EDITORIAL
Beatriz I Fernandez-Gil, Mioara Larion
No abstract text is available yet for this article.
2024: Frontiers in Cellular Neuroscience
https://read.qxmd.com/read/38600452/amide-proton-transfer-weighted-and-diffusion-weighted-imaging-based-radiomics-classification-algorithm-for-predicting-1p-19q-co-deletion-status-in-low-grade-gliomas
#20
JOURNAL ARTICLE
Andong Ma, Xinran Yan, Yaoming Qu, Haitao Wen, Xia Zou, Xinzi Liu, Mingjun Lu, Jianhua Mo, Zhibo Wen
BACKGROUND: 1p/19q co-deletion in low-grade gliomas (LGG, World Health Organization grade II and III) is of great significance in clinical decision making. We aim to use radiomics analysis to predict 1p/19q co-deletion in LGG based on amide proton transfer weighted (APTw), diffusion weighted imaging (DWI), and conventional MRI. METHODS: This retrospective study included 90 patients histopathologically diagnosed with LGG. We performed a radiomics analysis by extracting 8454 MRI-based features form APTw, DWI and conventional MR images and applied a least absolute shrinkage and selection operator (LASSO) algorithm to select radiomics signature...
April 10, 2024: BMC Medical Imaging
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