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https://read.qxmd.com/read/38687063/advancing-metagenome-assembled-genome-based-pathogen-identification-unraveling-the-power-of-long-read-assembly-algorithms-in-oxford-nanopore-sequencing
#1
JOURNAL ARTICLE
Zhao Chen, Christopher J Grim, Padmini Ramachandran, Jianghong Meng
Oxford Nanopore sequencing is one of the high-throughput sequencing technologies that facilitates the reconstruction of metagenome-assembled genomes (MAGs). This study aimed to assess the potential of long-read assembly algorithms in Oxford Nanopore sequencing to enhance the MAG-based identification of bacterial pathogens using both simulated and mock communities. Simulated communities were generated to mimic those on fresh spinach and in surface water. Long reads were produced using R9.4.1+SQK-LSK109 and R10...
April 30, 2024: Microbiology Spectrum
https://read.qxmd.com/read/38576268/genomic-characteristics-of-salmonella-montevideo-and-pomona-impact-of-isolation-source-on-antibiotic-resistance-virulence-and-metabolic-capacity
#2
JOURNAL ARTICLE
Lennin Isaac Garrido-Palazuelos, José Roberto Aguirre-Sánchez, Nohelia Castro-Del Campo, Osvaldo López-Cuevas, Berenice González-Torres, Cristóbal Chaidez, José Andrés Medrano-Félix
Salmonella enterica is known for its disease-causing serotypes, including Montevideo and Pomona. These serotypes have been found in various environments, including river water, sediments, food, and animals. However, the global spread of these serotypes has increased, leading to many reported infections and outbreaks. The goal of this study was the genomic analysis of 48 strains of S . Montevideo and S . Pomona isolated from different sources, including clinical. Results showed that environmental strains carried more antibiotic resistance genes than the clinical strains, such as genes for resistance to aminoglycosides, chloramphenicol, and sulfonamides...
April 4, 2024: International Journal of Environmental Health Research
https://read.qxmd.com/read/38567650/uterine-contractile-activity-and-neonatal-outcome-a-blind-analysis-of-a-randomized-controlled-trial-cohort
#3
JOURNAL ARTICLE
Milla Juhantalo, Tuija Hautakangas, Outi Palomäki, Jukka Uotila
INTRODUCTION: Sufficient contractions are necessary for a successful delivery but each contraction temporarily constricts the oxygenated blood flow to the fetus. Individual fetal or placental characteristics determine how the fetus can withstand this temporary low oxygen saturation. However, only a few studies have examined the impact of uterine activity on neonatal outcome and even less attention has been paid to parturients' individual characteristics. Our objective was therefore to find out whether fetuses compromised by maternal or intrapartum risk factors are more vulnerable to excessive uterine activity...
April 3, 2024: Acta Obstetricia et Gynecologica Scandinavica
https://read.qxmd.com/read/38561641/identification-of-long-preserved-specimens-reveals-the-historical-geographic-range-of-the-patagonian-lamprey-geotria-macrostoma-burmeister-1868-in-southern-south-america
#4
JOURNAL ARTICLE
Carla Riva Rossi, Claude B Renaud, Pamela Quiroga, Cindy F Baker, Claudio Baigún, Ian C Potter, Francisco J Neira, Santiago N Morawicki, Patricio Solimano
The lamprey genus Geotria Gray, 1851 currently includes only two species: G. australis and G. macrostoma. However, taxonomic relationships within the genus have traditionally been ambiguous and difficult to establish due to the extreme changes in morphology, dentition, and coloration that lampreys undergo during their life cycles, particularly during upstream migration and sexual maturation. Consequently, several lamprey specimens held in museum collections have remained unidentified, especially those from Argentina...
April 1, 2024: Journal of Fish Biology
https://read.qxmd.com/read/38519081/flavours-and-design-features-on-tobacco-product-packaging-near-schools-before-and-after-plain-packaging-implementation-in-montevideo-uruguay
#5
JOURNAL ARTICLE
Mauricio Luis Minacapilli Manetti, Valentina Gonzalez Peluffo, Victoria Taglioretti, Mary Barros, Virginia Nunez, Tamara Melian, Graziele Grilo, Laura Llambi
INTRODUCTION: Monitoring tobacco industry marketing strategies in countries that have introduced plain packaging helps with documenting variations in the market during the transition period. Uruguay implemented plain packaging in February 2020. We describe changes in the characteristics of tobacco packaging, content and sticks before and after plain packaging implementation. METHODS: Data were collected across 15 neighbourhoods in different socioeconomic areas in Montevideo, Uruguay, before and after implementation (2019 and 2021)...
March 22, 2024: Tobacco Control
https://read.qxmd.com/read/38484845/evaluating-the-safety-of-sous-vide-cooking-for-beef-products-inoculated-with-single-strains-of-salmonella-enterica-and-escherichia-coli-o157
#6
JOURNAL ARTICLE
Kavita Patil, Manita Adhikari, Peter Rubinelli, Karina Desiree, Kelly R Vierck, Jennifer C Acuff
Sous-videcooking is a growing trend among retailers and consumers. Foodborne pathogens may survive the cooking if non-validated parameters are used or if pathogens have enhanced thermalresistance. Pathogen inactivation from sous-vide cooking was determined when introduced directly to beef products or via contaminated spices, and with or without a finishing step. Beef products (ground beef, tenderized and non-tenderized steaks) were inoculated with pathogens (Salmonella Montevideo and Escherichia coli O157:NM) three ways: 1) directly onto the meat 2) ground black pepper incorporated into the recipe 3) ground pepper equilibrated at 30% RH (4 d) prior to incorporation...
March 12, 2024: Journal of Food Protection
https://read.qxmd.com/read/38261949/genetically-divergent-francisella-philomiragia-associated-with-septic-arthritis-montevideo-uruguay
#7
JOURNAL ARTICLE
Nadia Riera, Cecilia Salazar, Bernardina Rivera, Antonio Galiana, Rosario Durán, María Magdalena Portela, Virginia Antelo, Beatriz Pi, Óscar González, Gregorio Iraola
Here we report a case of septic arthritis associated with a genetically divergent Francisella philomiragia strain in a patient with chronic rheumatoid arthritis and Adult-onset Still's disease (AOSD) in Maldonado, Uruguay. In this study mass spectrometry together with whole-genome sequencing using Oxford Nanopore technology allowed for the correct identification of the etiologic agent.
March 2024: New Microbes and New Infections
https://read.qxmd.com/read/38215927/blood-lead-levels-and-math-learning-in-first-year-of-school-an-association-for-concern
#8
JOURNAL ARTICLE
Natalia Agudelo, Ariel Cuadro, Gabriel Barg, Elena I Queirolo, Nelly Mañay, Katarzyna Kordas
Lead is a well-known neurotoxicant that continues to affect children's cognition and behavior. With the aim to examine the associations of lead exposure with math performance in children at the beginning of formal schooling, we conducted a cross-sectional study of first-grade students from 11 schools in Montevideo, Uruguay. Math abilities were assessed with tests from the Batería III Woodcock-Muñoz (Calculation, Math Facts Fluency, Applied Problems, Math Calculation Skills and Broad Maths). Separate generalized linear models (GLM) tested the association of blood lead level (BLL) and each math ability, adjusting for key covariates including age and sex, maternal education, household assets and Home Observation for Measurement of the Environment Inventory score...
January 10, 2024: Environmental Research
https://read.qxmd.com/read/38158623/serotype-and-anti-microbial-resistance-trends-among-bovine-salmonella-isolates-from-samples-submitted-to-a-veterinary-diagnostic-laboratory-in-central-new-york-2007-2021
#9
JOURNAL ARTICLE
Maya J Craig, Kevin J Cummings, Melissa S Aprea, Rebecca J Franklin-Guild, Craig Altier
AIMS: Salmonella enterica is a leading cause of acute enteritis in people, and dairy cattle are an important reservoir of this pathogen. The objective of this study was to analyse serotype and anti-microbial resistance trends of Salmonella isolated from dairy cattle in the United States between 2007 and 2021. METHODS AND RESULTS: We collected data for bovine Salmonella isolates obtained from samples submitted to Cornell University's Animal Health Diagnostic Center (AHDC)...
December 29, 2023: Zoonoses and Public Health
https://read.qxmd.com/read/38136696/serovars-virulence-and-antimicrobial-resistance-genes-of-non-typhoidal-salmonella-strains-from-dairy-systems-in-mexico
#10
JOURNAL ARTICLE
Stephany Barrera, Sonia Vázquez-Flores, David Needle, Nadia Rodríguez-Medina, Dianella Iglesias, Joseph L Sevigny, Lawrence M Gordon, Stephen Simpson, W Kelley Thomas, Hectorina Rodulfo, Marcos De Donato
Salmonella isolated from dairy farms has a significant effect on animal health and productivity. Different serogroups of Salmonella affect both human and bovine cattle causing illness in both reservoirs. Dairy cows and calves can be silent Salmonella shedders, increasing the possibility of dispensing Salmonella within the farm. The aim of this study was to determine the genomic characteristics of Salmonella isolates from dairy farms and to detect the presence of virulence and antimicrobial resistance genes...
November 25, 2023: Antibiotics
https://read.qxmd.com/read/38134580/extensively-drug-ciprofloxacin-cefotaxime-and-azithromycin-resistant-salmonella-enterica-serovars-isolated-from-camel-meat-in-egypt
#11
JOURNAL ARTICLE
Khalid Ibrahim Sallam, Nahed Gomaa Kasem, Adel Abdelkhalek, Hend Ali Elshebrawy
Given the great importance of Salmonella as a leading foodborne pathogen of global concern and the few available data regarding its prevalence in camel meat, the present study aimed to determine the prevalence, antimicrobial resistance (AMR) profile, virulence genes, β-lactamase genes of Salmonella enterica serovars isolated from camel meat marketed in Egypt. Forty-five (29.6 %) of the 152 camel meat samples examined were positive for Salmonella spp. Among the 432 Salmonella presumptive colonies isolated, 128 were molecularly verified as Salmonella after confirmation by PCR targeting the Salmonella marker (invA) gene...
December 20, 2023: International Journal of Food Microbiology
https://read.qxmd.com/read/38104764/secular-trends-in-blood-lead-concentrations-of-school-age-children-in-montevideo-uruguay-from-2009-to-2019
#12
JOURNAL ARTICLE
Elena I Queirolo, Katarzyna Kordas, Gabriela Martínez, Zia Ahmed, Gabriel Barg, Nelly Mañay
Lead exposure continues to be a public health problem globally, yet very few countries perform systematic biomonitoring or surveillance of children's blood lead levels (BLLs). Secular trends in children's BLLs have not been well characterized outside North America and Europe. In 2009-19, we conducted a series of non-representative cross-sectional surveys in Montevideo, Uruguay, enrolling children living in areas of the city with known or suspected lead contamination. Lead was measured with atomic absorption spectrometry on fasting venous blood samples...
December 15, 2023: Environmental Pollution
https://read.qxmd.com/read/38027403/clinical-signs-associated-with-prostatic-disorders-in-canines-retrospective-study-in-uruguay-2011-2019
#13
JOURNAL ARTICLE
Guillermo Cazzuli, Gonzalo Suárez, Stefania Busconi, Juan Pablo Damián, Paula Pessina
BACKGROUND: Prostate disease represents about 0.7% of diseases in canines. The main diagnosed pathology is benign prostatic hyperplasia (BPH). However, the reports that study the association of a certain clinical sign with a specific prostate disease are scarce. AIM: The main objective of this study was to evaluate the clinical relevance of the most commonly observed clinical signs associated with the different prostatic disorders in canines admitted to the hospital of the Facultad de Veterinaria-Universidad de la República between 2011 and 2019...
October 2023: Open Veterinary Journal
https://read.qxmd.com/read/37986605/rapid-dot-blot-immunoassay-for-detecting-multiple-salmonella-enterica-serotypes
#14
JOURNAL ARTICLE
Jeongik Cho, Heymin Song, Hyun C Yoon, Hyunjin Yoon
Salmonella, a major contributor to foodborne infections, typically causes self-limiting gastroenteritis. However, it is frequently invasive and disseminates across the intestinal epithelium, leading to deadly bacteremia. Although the genus is subdivided into >2,600 serotypes based on their antigenic determinants, only few serotypes are responsible for most human infections. In this study, a rapid dot-blot immunoassay was developed to diagnose multiple Salmonella enterica serotypes with high incidence rates in humans...
October 28, 2023: Journal of Microbiology and Biotechnology
https://read.qxmd.com/read/37905268/effectiveness-of-balance-rehabilitation-unit-bru-posturography-versus-conventional-rehabilitation-in-patients-with-unilateral-peripheral-vestibular-dysfunction
#15
JOURNAL ARTICLE
Ana Teresa de la O-Gómez, Jose Alfredo Sierra-Ramírez, Daniel Ramos-Maldonado, Marta Elena Hernández-Caballero
BACKGROUND: Patients with unilateral peripheral vestibular deficit (UPVD) experience vertigo, dizziness, disability, negative influences on their quality of life, anxiety, and depression. In vestibular rehabilitation, virtual reality (VR) has proven to be effective. This investigation sought to evaluate the efficacy of the Balance Rehabilitation Unit (BRUTM ) (MedicaaTM Montevideo, Uruguay, Balance Suite, version BRU 415) in patients with UPVD. METHODS: A prospective, randomized, controlled study involved 38 patients from the Otoneurologic Service at the National Institute of Rehabilitation "Luis Guillermo Ibarra Ibarra" in Mexico...
September 2023: Curēus
https://read.qxmd.com/read/37804264/parent-experiences-with-warning-labels-after-policy-implementation-in-uruguay
#16
JOURNAL ARTICLE
Florencia Alcaire, Leandro Machín, María Rosa Curutchet, Ana Giménez, Gastón Ares
OBJECTIVE: To explore the perception and experiences of parents of children and adolescents during the first year of the mandatory implementation of nutritional warning labels in Uruguay. DESIGN: Qualitative research based on semistructured interviews. SETTING: Montevideo, Uruguay. PARTICIPANTS: Twenty-eight parents of children and adolescents. PHENOMENON OF INTEREST: Perception of and experiences with warning labels, a front-of-pack nutrition labeling scheme that has become increasingly popular in Latin America...
November 2023: Journal of Nutrition Education and Behavior
https://read.qxmd.com/read/37681111/the-latin-american-federation-of-biophysical-societies-lafebs
#17
JOURNAL ARTICLE
Silvia Del Valle Alonso, Rosangela Itri, Leandro R S Barbosa, R Daniel Peluffo, F Luis González Flecha
The Latin American Federation of Biophysical Societies (LAFeBS) was constituted in 2007 in Montevideo, Uruguay, as a collaborative effort among the Biophysical Societies of Argentina, Brazil, and Uruguay. This visionary collaboration foresees the future of Biophysics in Latin America. In this commentary, we will briefly review the history of LAFeBS, the remarkable path undertaken since its foundation 16 years ago, and its key initiative, the Latin American Postgraduate Program in Biophysics (POSLATAM).
August 2023: Biophysical Reviews
https://read.qxmd.com/read/37680214/vertebral-discitis-caused-by-salmonella-enterica-serovar-montevideo-infection
#18
Maithri P Reddy, Zoheb Irshad Sulaiman, Gina Askar
Salmonellosis is a common cause of foodborne illness worldwide, manifesting as non-invasive non-typhoidal salmonellosis, invasive non-typhoidal salmonellosis, and typhoid fever. It also rarely presents as Salmonella osteomyelitis in children with hemoglobinopathies and immunocompromised adults and even rarer osteomyelitis in an immunocompetent host without significant risk factors. Our case is of a 38-year-old immunocompetent male without significant risk factors presented with biopsy proven Salmonella vertebral discitis due to exposure to contaminated and undercooked poultry...
2023: IDCases
https://read.qxmd.com/read/37676871/genetic-diversity-of-salmonella-enterica-isolated-over-13-years-from-raw-california-almonds-and-from-an-almond-orchard
#19
JOURNAL ARTICLE
Anne-Laure Moyne, Opeyemi U Lawal, Jeff Gauthier, Irena Kukavica-Ibrulj, Marianne Potvin, Lawrence Goodridge, Roger C Levesque, Linda J Harris
A comparative genomic analysis was conducted for 171 Salmonella isolates recovered from raw inshell almonds and raw almond kernels between 2001 and 2013 and for 30 Salmonella Enteritidis phage type (PT) 30 isolates recovered between 2001 and 2006 from a 2001 salmonellosis outbreak-associated almond orchard. Whole genome sequencing was used to measure the genetic distance among isolates by single nucleotide polymorphism (SNP) analyses and to predict the presence of plasmid DNA and of antimicrobial resistance (AMR) and virulence genes...
2023: PloS One
https://read.qxmd.com/read/37637118/assessment-of-the-prevalence-serotype-and-antibiotic-resistance-pattern-of-salmonella-enterica-in-integrated-farming-systems-in-the-maryland-dc-area
#20
JOURNAL ARTICLE
Zabdiel Alvarado-Martinez, Dita Julianingsih, Zajeba Tabashsum, Arpita Aditya, Chuan-Wei Tung, Anna Phung, Grace Suh, Katherine Hshieh, Matthew Wall, Sarika Kapadia, Christa Canagarajah, Saloni Maskey, George Sellers, Aaron Scriba, Debabrata Biswas
Implementation of organic/pasture farming practices has been increasing in the USA regardless of official certification. These practices have created an increasingly growing demand for marketing safe products which are produced through these systems. Products from these farming systems have been reported to be at greater risk of transmitting foodborne pathogens because of current trends in their practices. Salmonella enterica (SE) is a ubiquitous foodborne pathogen that remains a public health issue given its prevalence in various food products, but also in the environment and as part of the microbial flora of many domestic animals...
2023: Frontiers in Microbiology
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