keyword
https://read.qxmd.com/read/38709881/sctc-inference-of-developmental-potential-from-single-cell-transcriptional-complexity
#1
JOURNAL ARTICLE
Hai Lin, Huan Hu, Zhen Feng, Fei Xu, Jie Lyu, Xiang Li, Liyu Liu, Gen Yang, Jianwei Shuai
Inferring the developmental potential of single cells from scRNA-Seq data and reconstructing the pseudo-temporal path of cell development are fundamental but challenging tasks in single-cell analysis. Although single-cell transcriptional diversity (SCTD) measured by the number of expressed genes per cell has been widely used as a hallmark of developmental potential, it may lead to incorrect estimation of differentiation states in some cases where gene expression does not decrease monotonously during the development process...
May 6, 2024: Nucleic Acids Research
https://read.qxmd.com/read/38708850/genomic-prediction-in-brassica-napus-evaluating-the-benefit-of-imputed-whole-genome-sequencing-data
#2
JOURNAL ARTICLE
Sven E Weber, Lennard Roscher-Ehrig, Tobias Kox, Amine Abbadi, Andreas Stahl, Rod J Snowdon
Advances in sequencing technology allow whole plant genomes to be sequenced with high quality. Combining genotypic and phenotypic data in genomic prediction helps breeders to select crossing partners in partially phenotyped populations. In plant breeding programs, the cost of sequencing entire breeding populations still exceeds available genotyping budgets. Hence, the method for genotyping is still mainly single nucleotide polymorphism (SNP) arrays; however, arrays are unable to assess the entire genome- and population-wide diversity...
May 6, 2024: Genome Génome / Conseil National de Recherches Canada
https://read.qxmd.com/read/38707283/metabarcoding-of-pathogenic-parasites-based-on-copro-dna-analysis-of-wild-animals-in-south-korea
#3
JOURNAL ARTICLE
Jun Ho Choi, Soo Lim Kim, Dong Kyun Yoo, Myung-Hee Yi, Singeun Oh, Myungjun Kim, Sohyeon Yun, Tai-Soon Yong, Seongjun Choe, Jong Koo Lee, Ju Yeong Kim
Four species of dominant wild animals, namely, Prionailurus bengalensis euptilurus , Nyctereutes procyonoides koreensis , Hydropotes inermis argyropus , and Sus scrofa coreanus , are hosts of potential infectious agents, including helminths and protozoa. Therefore, it is necessary to analyze the infectious agents present in these wild animals to monitor and control the spread of pathogens. In the present study, fecal samples from 51 wild animals were collected from the mountains of Yangpyeong, Hoengseong, and Cheongyang in South Korea and metabarcoding of the V9 region of the 18S rRNA gene was performed to identify various parasite species that infect these wild animals...
May 15, 2024: Heliyon
https://read.qxmd.com/read/38706583/%C3%AF-carexqingyuanensis-cyperaceae-a-new-species-from-guangdong-china
#4
JOURNAL ARTICLE
Ya-Li Li, Shuang-Wen Deng, Jin-Chu Luo, Ming-Xia Li, Li-Ting Zou, Qiu-Gen Zeng, Hong-Feng Chen
Carexqingyuanensis , a new species of Cyperaceae from Guangdong Province, China, is described and illustrated. The new species is morphologically similar to Carexpeliosanthifolia F. T. Wang & Tang ex P. C. Li, but it can be distinguished by the racemose inflorescence branches appearing single (rarely binate or ternate) (vs. binate or ternate), one (rarely two or three) (vs. 1-3) spiked, male part of linear-cylindrical spikes much longer than the female part (vs. just male part short-cylindrical and slightly longer than female part), style base thickened (vs...
2024: PhytoKeys
https://read.qxmd.com/read/38704966/the-structure-of-wing-in-the-earliest-permopsocida
#5
JOURNAL ARTICLE
Jakub Prokop, Kateřina Rosová, Martina Pecharová, Pavel Sroka, Angelika Leipner, André Nel
Permopsocids are small acercarian insects with mouthparts specialized for sucking. They are closely related to Hemiptera and Thysanoptera. The earliest known representatives are from the Early Permian. Here evidence is presented that the Permopsocida occurred even earlier in Pennsylvanian (Moscovian) deposits in the Piesberg quarry near Osnabrück (Lower Saxony, Germany). This material is assigned to the Permian family Psocidiidae; Carbonopsocus mercuryi gen. et sp. nov., based on the wing venation diagnosed by the unique branching pattern of the main veins, the shape of the areola postica being longer than wide, the angular shape of the pterostigma, the ir crossvein directed proximally mid of pterostigma (apomorphy) and the vannus formed by the three veins of PCu, A1 and A2...
May 4, 2024: Arthropod Structure & Development
https://read.qxmd.com/read/38704448/deciphering-mycobiota-and-its-functional-dynamics-in-root-hairs-of-rhododendron-campanulatum-d-don-through-next-gen-sequencing
#6
JOURNAL ARTICLE
Nafeesa Farooq Khan, Sheikh Sajad Ahmed, Mukhtar Iderawumi Abdulraheem, Zafar Ahmad Reshi, Abdul Wahab, Gholamreza Abdi
The Himalayas provide unique opportunities for the extension of shrubs beyond the upper limit of the tree. However, little is known about the limitation of the biotic factors belowground of shrub growth at these cruising altitudes. To fill this gap, the present study deals with the documentation of root-associated microbiota with their predicted functional profiles and interactions in the host Rhododendron campanulatum, a krummholz species. While processing 12 root samples of R. campanulatum from the sites using Omics we could identify 134 root-associated fungal species belonging to 104 genera, 74 families, 39 orders, 17 classes, and 5 phyla...
May 4, 2024: Scientific Reports
https://read.qxmd.com/read/38703680/biochar-reduces-antibiotic-transport-by-altering-soil-hydrology-and-enhancing-antibiotic-sorption
#7
JOURNAL ARTICLE
Xiang-Yu Tang, Wen-Min Yin, Guang Yang, Jun-Fang Cui, Jian-Hua Cheng, Fei Yang, Xiao-Yu Li, Chun-Yan Wu, Sen-Gen Zhu
The performance of biochar (BC) in reducing the transport of antibiotics under field conditions has not been sufficiently explored. In repacked sloping boxes of a calcareous soil, the effects of different BC treatments on the discharge of three relatively weakly sorbing antibiotics (sulfadiazine, sulfamethazine, and florfenicol) via runoff and drainage were monitored for three natural rain events. Surface application of 1 % BC (1 %BC-SA) led to the most effective reduction in runoff discharge of the two sulfonamide antibiotics, which can be partly ascribed to the enhanced water infiltration...
May 3, 2024: Journal of Hazardous Materials
https://read.qxmd.com/read/38701101/effects-of-systemic-inflammation-on-the-network-oscillation-in-the-anterior-cingulate-cortex-and-cognitive-behavior
#8
JOURNAL ARTICLE
Ayumi Hirao, Yasushi Hojo, Gen Murakami, Rina Ito, Miki Hashizume, Takayuki Murakoshi, Naonori Uozumi
Network oscillation in the anterior cingulate cortex (ACC) plays a key role in attention, novelty detection and anxiety; however, its involvement in cognitive impairment caused by acute systemic inflammation is unclear. To investigate the acute effects of systemic inflammation on ACC network oscillation and cognitive function, we analyzed cytokine level and cognitive performance as well as network oscillation in the mouse ACC Cg1 region, within 4 hours after lipopolysaccharide (LPS, 30 μg/kg) administration...
2024: PloS One
https://read.qxmd.com/read/38699294/mental-health-and-psychosocial-interventions-to-limit-the-adverse-psychological-effects-of-disasters-and-emergencies-in-china-a-scoping-review
#9
REVIEW
Gen Li, Wei Shi, Xing Gao, Xinyi Shi, Xiaoyu Feng, Di Liang, Chunbo Li, Michael R Phillips, Brian J Hall
Exposure to disasters and public health emergencies negatively affects mental health. Research documenting the psychosocial responses to these calamities in China increased dramatically after the 2008 Wenchuan earthquake. However, there is no comprehensive assessment of the available literature on China's mental health and psychosocial support (MHPSS) responses to these events. This scoping review systematically maps existing published research and grey literature sources regarding MHPSS to disasters and emergencies in China...
April 2024: The Lancet Regional Health. Western Pacific
https://read.qxmd.com/read/38698811/the-prognostic-and-immunological-role-of-mcm3-in-pan-cancer-and-validation-of-prognosis-in-a-clinical-lower-grade-glioma-cohort
#10
JOURNAL ARTICLE
Qian-Rong Huang, Qian Jiang, Ju-Yuan Tan, Ren-Bao Nong, Jun Yan, Xia-Wei Yang, Li-Gen Mo, Guo-Yuan Ling, Teng Deng, Yi-Zhen Gong
Background: Previous studies have shown that MCM3 plays a key role in initiating DNA replication. However, the mechanism of MCM3 function in most cancers is still unknown. The aim of our study was to explore the expression, prognostic role, and immunological characteristics of MCM3 across cancers. Methods: We explored the expression pattern of MCM3 across cancers. We subsequently explored the prognostic value of MCM3 expression by using univariate Cox regression analysis. Spearman correlation analysis was performed to determine the correlations between MCM3 and immune-related characteristics, mismatching repair (MMR) signatures, RNA modulator genes, cancer stemness, programmed cell death (PCD) gene expression, tumour mutation burden (TMB), microsatellite instability (MSI), and neoantigen levels...
2024: Frontiers in Pharmacology
https://read.qxmd.com/read/38698755/which-drugs-are-more-effective-in-preventing-familial-adenomatous-polyposis-progression-based-on-network-meta-analysis
#11
Pei Luo, Wenjun Shi, Xianshuo Cheng, Jun Yang, Gen Pei, Jian Dong
BACKGROUND: Familial adenomatous polyposis (FAP) is an inherited disorder. At present, an increasing number of medications are being employed to treat FAP; however, only a few have been assessed for their efficacy and safety. Therefore, this study aimed to conduct a network meta-analysis to compare the therapeutic outcomes and adverse drug reactions of all FAP-associated medications. METHOD: Six relevant databases were searched to identify pertinent randomized controlled trials (RCTs), and information on the dosage and frequency of various drugs was extracted...
May 2, 2024: Current Pharmaceutical Design
https://read.qxmd.com/read/38698147/a-new-attempt-to-remove-toluene-using-nickel-iron-bimetallic-particle-electrode-reactor
#12
JOURNAL ARTICLE
Siwen Li, Bo Jiang, Gen Liu, Chunyan Shi, Hongbin Yu, Yingzi Lin
A new attempt of removing toluene waste gas using a three-dimensional electrode reaction device with nickel-iron bimetallic particle electrode is presented in this paper. The particle electrode was prepared by a simple liquid phase reduction method. Through bimetal modification, the particle electrode mass transfer rate is increased to 1.29 times, and the degradation efficiency of the reactor is increased by nearly 40%, which makes it possible to remove toluene waste gas by other electrochemical methods in addition to plasma method...
May 2, 2024: Scientific Reports
https://read.qxmd.com/read/38697642/chest-pain-with-diffuse-st-segment-elevation
#13
JOURNAL ARTICLE
Zhi Li, Xin-Wen Min, Pei-Gen He, Chuan-Hai Zhang
No abstract text is available yet for this article.
May 2, 2024: BMJ: British Medical Journal
https://read.qxmd.com/read/38697424/an-engineered-pichia-pastoris-platform-for-the-biosynthesis-of-silk-based-nanomaterials-with-therapeutic-potential
#14
JOURNAL ARTICLE
Ernuo Tian, Xiao Shen, Meili Xiao, Zhihua Zhu, Yi Yang, Xing Yan, Pingping Wang, Gen Zou, Zhihua Zhou
Silk fibroin (SF) from the cocoon of silkworm has exceptional mechanical properties and biocompatibility and is used as a biomaterial in a variety of fields. Sustainable, affordable, and scalable manufacturing of SF would enable its large-scale use. We report for the first time the high-level secretory production of recombinant SF peptides in engineered Pichia pastoris cell factories and the processing thereof to nanomaterials. Two SF peptides (BmSPR3 and BmSPR4) were synthesized and secreted by P. pastoris using signal peptides and appropriate spacing between hydrophilic sequences...
April 30, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38697327/anterior-cruciate-ligament-acl-injured-knees-with-meniscal-ramp-lesions-manifest-greater-anteroposterior-and-rotatory-instability-compared-with-isolated-acl-injured-knees
#15
JOURNAL ARTICLE
Hiroaki Fukushima, Jiro Kato, Shunta Hanaki, Kyohei Ota, Makoto Kobayashi, Yusuke Kawanishi, Masato Yoshida, Tetsuya Takenaga, Gen Kuroyanagi, Hideki Murakami, Masahiro Nozaki
PURPOSE: To investigate the effects of ramp lesion (RL) and its repair on knee instability in patients with anterior cruciate ligament (ACL) injury by quantitatively assessing anteroposterior and rotational knee instability before and after ACL reconstruction. METHODS: All primary double-bundle ACL reconstruction using hamstring autografts between 2016 and 2021 were evaluated retrospectively. Patients with RLs without other meniscal injuries were included in Group R, whereas those with isolated ACL injuries constituted Group C...
April 30, 2024: Arthroscopy
https://read.qxmd.com/read/38695000/treatment-of-bipolar-disorders-in-older-adults-a-review
#16
JOURNAL ARTICLE
Nemanja Ljubic, Bianca Ueberberg, Heinz Grunze, Hans-Jörg Assion
BACKGROUND: Old age bipolar disorder has been an orphan of psychiatric research for a long time despite the fact that bipolar disorder (BD)-I and II together may affect 0.5-1.0% of the elderly. It is also unclear whether aetiology, course of illness and treatment should differ in patients with a first manifestation in older age and patients suffering from a recurrence of a BD known for decades. This narrative review will summarize the current state of knowledge about the epidemiology, clinical features, and treatment of BD in the elderly...
October 2023: Focus: Journal of Life Long Learning in Psychiatry
https://read.qxmd.com/read/38693072/reversible-switching-between-microwave-absorption-and-emi-shielding-of-vo-2-composite-foam
#17
JOURNAL ARTICLE
Si-Yuan Liao, Xiao-Yun Wang, Yu-Ying Shi, Qiao-Feng Wang, Xin-Yin Gu, You-Gen Hu, Peng-Li Zhu, Rong Sun, Yan-Jun Wan
Developing lightweight composite with reversible switching between microwave (MW) absorption and electromagnetic interference (EMI) shielding is promising yet remains highly challenging due to the completely inconsistent attenuation mechanism for electromagnetic (EM) radiation. Here, a lightweight vanadium dioxide/expanded polymer microsphere composites foam (VO2 /EPM) is designed and fabricated with porous structures and 3D VO2 interconnection, which possesses reversible switching function between MW absorption and EMI shielding under thermal stimulation...
May 1, 2024: Small
https://read.qxmd.com/read/38690681/the-past-10-years-of-molecular-ferroelectrics-structures-design-and-properties
#18
REVIEW
Qiang Pan, Zhu-Xiao Gu, Ru-Jie Zhou, Zi-Jie Feng, Yu-An Xiong, Tai-Ting Sha, Yu-Meng You, Ren-Gen Xiong
Ferroelectricity, which has diverse important applications such as memory elements, capacitors, and sensors, was first discovered in a molecular compound, Rochelle salt, in 1920 by Valasek. Owing to their superiorities of lightweight, biocompatibility, structural tunability, mechanical flexibility, etc. , the past decade has witnessed the renaissance of molecular ferroelectrics as promising complementary materials to commercial inorganic ferroelectrics. Thus, on the 100th anniversary of ferroelectricity, it is an opportune time to look into the future, specifically into how to push the boundaries of material design in molecular ferroelectric systems and finally overcome the hurdles to their commercialization...
May 1, 2024: Chemical Society Reviews
https://read.qxmd.com/read/38687183/-anaerolentibacter-hominis-gen-nov-sp-nov-diplocloster-hominis-sp-nov-and-pilosibacter-fragilis-gen-nov-sp-nov-isolated-from-human-faeces
#19
JOURNAL ARTICLE
Yang Yan, Qing-Hua Zhao, Chang Xu, Rui-Qi Wei, He Jiang, Shuang-Jiang Liu
Three Gram-positive, obligately anaerobic bacterial strains, namely CSJ-1T , CSJ-3T , and CSJ-4T , were isolated from faeces of healthy persons. They were characterized through a combination of whole-genome sequencing, phenotypic traits, and metabolomic analysis. The genome sizes of CSJ-1T , CSJ-4T , and CSJ-3T were 3.3, 3.8, and 6.1 Mbp, with DNA G+C contents of 47.2, 48.3, and 48.8 mol%, respectively. Strain CSJ-3T was identified as representing a novel species, Diplocloster hominis (type strain CSJ-3T =CGMCC 1...
April 2024: International Journal of Systematic and Evolutionary Microbiology
https://read.qxmd.com/read/38685372/nrf2-expression-mitochondrial-fission-and-neuronal-apoptosis-in-the-prefrontal-cortex-of-methamphetamine-abusers-and-rats
#20
JOURNAL ARTICLE
Qian-Yun Nie, Gen-Meng Yang, Peng Zhang, Wen-Juan Dong, Di Jing, Zhen-Ping Hou, Yan-Xia Peng, Yang Yu, Li-Hua Li, Shi-Jun Hong
Methamphetamine (MA), a representative amphetamine-type stimulant, is one of the most abused drugs worldwide. Studies have shown that MA-induced neurotoxicity is strongly associated with oxidative stress and apoptosis. While nuclear factor E2-related factor 2 (Nrf2), an antioxidant transcription factor, is known to exert neuroprotective effects, its role in MA-induced dopaminergic neuronal apoptosis remains incompletely understood. In the present study, we explored the effects of MA on the expression levels of Nrf2, dynamin-related protein 1 (Drp1), mitofusin 1 (Mfn1), cytochrome c oxidase (Cyt-c), and cysteine aspartate-specific protease 3 (Caspase 3), as well as the correlations between Nrf2 and mitochondrial dynamics and apoptosis...
April 27, 2024: Brain Research
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