keyword
https://read.qxmd.com/read/38712070/chemical-proteomic-profiling-of-protein-dopaminylation-in-colorectal-cancer-cells
#1
Nan Zhang, Shuaixin Gao, Haidong Peng, Jinghua Wu, Huapeng Li, Connor Gibson, Sophia Wu, Jiangjiang Zhu, Qingfei Zheng
Histone dopaminylation is a newly identified epigenetic mark that plays a role in the regulation of gene transcription, where an isopeptide bond is formed between the fifth amino acid residue of H3 ( i.e. , glutamine) and dopamine. In our previous studies, we discovered that the dynamics of this post-translational modification (including installation, removal, and replacement) were regulated by a single enzyme, transglutaminase 2 (TGM2), through reversible transamination. Recently, we developed a chemical probe to specifically label and enrich histone dopaminylation via bioorthogonal chemistry...
April 28, 2024: bioRxiv
https://read.qxmd.com/read/38688945/characterization-of-macrophages-in-head-and-neck-squamous-cell-carcinoma-and-development-of-mrg-based-risk-signature
#2
JOURNAL ARTICLE
Lei Liu, Qiang Liu
Macrophages are immune cells in the TME that can not only inhibit angiogenesis, extracellular matrix remodeling, cancer cell proliferation, and metastasis but also mediate the phagocytosis and killing of cancer cells after activation, making them key targets in anti-tumor immunotherapy. However, there is little research on macrophages and their relation to disease prognosis in HNSCC. Initially, we collected scRNA-seq, bulk RNA-seq, and clinical data. Subsequently, we identified macrophages and distinguished MRGs...
April 30, 2024: Scientific Reports
https://read.qxmd.com/read/38667282/biological-implications-and-functional-significance-of-transglutaminase-type-2-in-nervous-system-tumors
#3
REVIEW
Mariachiara Buccarelli, Giorgia Castellani, Vincenzo Fiorentino, Cristina Pizzimenti, Simone Beninati, Lucia Ricci-Vitiani, Maria Luisa Scattoni, Carlo Mischiati, Francesco Facchiano, Claudio Tabolacci
Transglutaminase type 2 (TG2) is the most ubiquitously expressed member of the transglutaminase family. TG2 catalyzes the transamidation reaction leading to several protein post-translational modifications and it is also implicated in signal transduction thanks to its GTP binding/hydrolyzing activity. In the nervous system, TG2 regulates multiple physiological processes, such as development, neuronal cell death and differentiation, and synaptic plasticity. Given its different enzymatic activities, aberrant expression or activity of TG2 can contribute to tumorigenesis, including in peripheral and central nervous system tumors...
April 11, 2024: Cells
https://read.qxmd.com/read/38640713/berberine-alleviates-neuroinflammation-by-downregulating-nfkb%C3%AE%C2%BA%C3%AE%C2%BAnf-lcn2-pathway-in-sepsis-associated-encephalopathy-network-pharmacology-bioinformatics-and-experimental-validation
#4
JOURNAL ARTICLE
Hailong Gong, Yun Xia, Guoqing Jing, Min Yuan, Huimin Zhou, Die Wu, Jing Zuo, Chuntian Lei, Delida Aidebaike, Xiaojing Wu, Xuemin Song
BACKGROUND: Sepsis refers to a systemic inflammatory response caused by infection, involving multiple organs. Sepsis-associated encephalopathy (SAE), as one of the most common complications in patients with severe sepsis, refers to the diffuse brain dysfunction caused by sepsis without central nervous system infection. However, there is no clear diagnostic criteria and lack of specific diagnostic markers. METHODS: The main active ingredients of coptidis rhizoma(CR) were identified from TCMSP and SwissADME databases...
April 18, 2024: International Immunopharmacology
https://read.qxmd.com/read/38623945/deletion-of-tgm2-suppresses-bmp-mediated-hepatocyte-to-cholangiocyte-metaplasia-in-ductular-reaction
#5
JOURNAL ARTICLE
Yaqing Chen, Yi Yan, Yujing Li, Liang Zhang, Tingting Luo, Xinlong Zhu, Dan Qin, Ning Chen, Wendong Huang, Xiangmei Chen, Liqiang Wang, Xianmin Zhu, Lisheng Zhang
Transglutaminase 2 (Tgm2) plays an essential role in hepatic repair following prolonged toxic injury. During cholestatic liver injury, the intrahepatic cholangiocytes undergo dynamic tissue expansion and remodelling, referred to as ductular reaction (DR), which is crucial for liver regeneration. However, the molecular mechanisms governing the dynamics of active cells in DR are still largely unclear. Here, we generated Tgm2-knockout mice (Tgm2-/- ) and Tgm2-CreERT2 -Rosa26-mTmG flox/flox (Tgm2CreERT2 -R26T/Gf/f ) mice and performed a three-dimensional (3D) collagen gel culture of mouse hepatocytes to demonstrate how Tgm2 signalling is involved in DR to remodel intrahepatic cholangiocytes...
April 16, 2024: Cell Proliferation
https://read.qxmd.com/read/38609499/col5a1-promotes-triple-negative-breast-cancer-progression-by-activating-tumor-cell-macrophage-crosstalk
#6
JOURNAL ARTICLE
Xi Chen, Chenao Ma, Yaming Li, Yiran Liang, Tong Chen, Dianwen Han, Dan Luo, Ning Zhang, Wenjing Zhao, Lijuan Wang, Qifeng Yang
Triple-negative breast cancer (TNBC) is an exceptionally aggressive subtype of breast cancer. Despite the recognized interplay between tumors and tumor-associated macrophages in fostering drug resistance and disease progression, the precise mechanisms leading these interactions remain elusive. Our study revealed that the upregulation of collagen type V alpha 1 (COL5A1) in TNBC tissues, particularly in chemoresistant samples, was closely linked to an unfavorable prognosis. Functional assays unequivocally demonstrated that COL5A1 played a pivotal role in fueling cancer growth, metastasis, and resistance to doxorubicin, both in vitro and in vivo...
April 12, 2024: Oncogene
https://read.qxmd.com/read/38607731/role-of-serotonylation-and-sert-posttranslational-modifications-in-alzheimer-s-disease-pathogenesis
#7
REVIEW
Arubala P Reddy, Priyanka Rawat, Nicholas Rohr, Razelle Alvir, Jasbir Bisht, Mst Anika Bushra, Jennifer Luong, Aananya P Reddy
The neurotransmitter serotonin (5-hydroxytryptamine, 5-HT) is implicated mainly in Alzheimer's disease (AD) and reported to be responsible for several processes and roles in the human body, such as regulating sleep, food intake, sexual behavior, anxiety, and drug abuse. It is synthesized from the amino acid tryptophan. Serotonin also functions as a signal between neurons to mature, survive, and differentiate. It plays a crucial role in neuronal plasticity, including cell migration and cell contact formation...
April 4, 2024: Aging and Disease
https://read.qxmd.com/read/38568505/microrna-mediated-kr%C3%A3-ppel-like-factor-4-upregulation-induces-alternatively-activated-macrophage-associated-marker-and-chemokine-transcription-in-4-4-methylene-diphenyl-diisocyanate-exposed-macrophages
#8
JOURNAL ARTICLE
Chen-Chung Lin, Brandon F Law, Justin M Hettick
Occupational exposure to 4,4'-methylene diphenyl diisocyanate (MDI) is associated with occupational asthma (OA) development. Alveolar macrophage-induced recruitment of immune cells to the lung microenvironment plays an important role during asthma pathogenesis. Previous studies identified that MDI/MDI-glutathione (GSH)-exposure downregulates endogenous hsa-miR-206-3p / hsa-miR-381-3p . Our prior report shows that alternatively activated (M2) macrophage-associated markers/chemokines are induced by MDI/MDI-GSH-mediated Krüppel-Like Factor 4 (KLF4) upregulation in macrophages and stimulates immune cell chemotaxis...
April 3, 2024: Xenobiotica; the Fate of Foreign Compounds in Biological Systems
https://read.qxmd.com/read/38562869/bioorthogonal-labeling-and-enrichment-of-histone-monoaminylation-reveal-its-accumulation-and-regulatory-function-in-cancer-cell-chromatin
#9
Nan Zhang, Jinghua Wu, Farzana Hossain, Haidong Peng, Huapeng Li, Connor Gibson, Min Chen, Huan Zhang, Shuaixin Gao, Xinru Zheng, Yongdong Wang, Jiangjiang Zhu, Jing J Wang, Ian Maze, Qingfei Zheng
Histone monoaminylation ( i . e ., serotonylation and dopaminylation) is an emerging category of epigenetic mark occurring on the fifth glutamine (Q5) residue of H3 N-terminal tail, which plays significant roles in gene transcription. Current analysis of histone monoaminylation is mainly based on site-specific antibodies and mass spectrometry, which either lacks high resolution or is time-consuming. In this study, we report the development of chemical probes for bioorthogonal labeling and enrichment of histone serotonylation and dopaminylation...
March 26, 2024: bioRxiv
https://read.qxmd.com/read/38501838/combining-bulk-and-scrna-seq-to-explore-the-molecular-mechanisms-governing-the-distinct-efferocytosis-activities-of-a-macrophage-subpopulation-in-pdac
#10
JOURNAL ARTICLE
Shaoliang Zhu, Quan Cheng, Mengjie Zou, Chunxing Li, Yi Tang, Longjie Xia, Yanming Jiang, Zheng Gong, Zhenyong Tang, Yuntian Tang, Honglin Luo, Ningfu Peng, Xiaojing Wang, Xiaofeng Dong
Pancreatic ductal adenocarcinoma (PDAC), a very aggressive tumour, is currently the third leading cause of cancer-related deaths. Unfortunately, many patients face the issue of inoperability at the diagnostic phase leading to a quite dismal prognosis. The onset of metastatic processes has a crucial role in the elevated mortality rates linked to PDAC. Individuals with metastatic advances receive only palliative therapy and have a grim prognosis. It is essential to carefully analyse the intricacies of the metastatic process to enhance the prognosis for individuals with PDAC...
April 2024: Journal of Cellular and Molecular Medicine
https://read.qxmd.com/read/38471126/linker-preserved-iron-metal-organic-framework-based-lateral-flow-assay-for-sensitive-transglutaminase-2-detection-in-urine-through-machine-learning-assisted-colorimetric-analysis
#11
JOURNAL ARTICLE
Mulya Supianto, Dong Kyu Yoo, Hagyeong Hwang, Han Bin Oh, Sung Hwa Jhung, Hye Jin Lee
A groundbreaking demonstration of the utilization of the metal-organic framework MIL-101(Fe) as an exceptionally perceptive visual label in colorimetric lateral flow assays (LFA) is described. This pioneering approach enables the precise identification of transglutaminase 2 (TGM2), a recognized biomarker for chronic kidney disease (CKD), in urine specimens, which offers a remarkably sensitive naked-eye detection mechanism. The surface of MIL-101(Fe) was modified with oxalyl chloride, adipoyl chloride, and poly(acrylic) acid (PAA); these not only improved the labeling material stability in a complex matrix but also achieved a systematic control in the detection limit of the TGM2 concentration using our LFA platform...
March 12, 2024: ACS Sensors
https://read.qxmd.com/read/38454166/pirfenidone-alleviates-fibrosis-by-acting-on-tumour-stroma-interplay-in-pancreatic-cancer
#12
JOURNAL ARTICLE
Yalan Lei, Jin Xu, Mingming Xiao, Di Wu, He Xu, Jing Yang, Xiaoqi Mao, Haoqi Pan, Xianjun Yu, Si Shi
BACKGROUND: Pancreatic ductal adenocarcinoma (PDAC) is a malignancy with a 5-year survival rate of 12%. The abundant mesenchyme is partly responsible for the malignancy. The antifibrotic therapies have gained attention in recent research. However, the role of pirfenidone, an FDA-approved drug for idiopathic pulmonary fibrosis, remains unclear in PDAC. METHODS: Data from RNA-seq of patient-derived xenograft (PDX) models treated with pirfenidone were integrated using bioinformatics tools to identify the target of cell types and genes...
March 7, 2024: British Journal of Cancer
https://read.qxmd.com/read/38365849/hif-2%C3%AE-dependent-tgfbi-promotes-ovarian-cancer-chemoresistance-by-activating-pi3k-akt-pathway-to-inhibit-apoptosis-and-facilitate-dna-repair-process
#13
JOURNAL ARTICLE
Sijia Ma, Jia Wang, Zhiwei Cui, Xiling Yang, Xi Cui, Xu Li, Le Zhao
Hypoxia-mediated chemoresistance plays a crucial role in the development of ovarian cancer (OC). However, the roles of hypoxia-related genes (HRGs) in chemoresistance and prognosis prediction and theirs underlying mechanisms remain to be further elucidated. We intended to identify and validate classifiers of hub HRGs for chemoresistance, diagnosis, prognosis as well as immune microenvironment of OC, and to explore the function of the most crucial HRG in the development of the malignant phenotypes. The RNA expression and clinical data of HRGs were systematically evaluated in OC training group...
February 16, 2024: Scientific Reports
https://read.qxmd.com/read/38363884/prognostic-significance-of-rkip-tgm2-and-cmtm4-expression-in-oral-squamous-cell-carcinoma
#14
JOURNAL ARTICLE
Tianyu Luo, Tao Xu, Yurong Ou, Hongfei Ci, Junhui Sun
BACKGROUND: The expression of RKIP, TGM2, and CMTM4 in oral squamous cell carcinoma (OSCC) and normal oral tissues was detected and their correlations were analyzed. The relationships between RKIP, TGM2, and CMTM4 and the clinicopathological parameters and prognosis of patients were analyzed. METHODS: Seventy cancerous and adjacent normal tissue samples were selected, recorded in the pathology department, and embedded in paraffin. Protein expression was detected by immunohistochemistry...
February 16, 2024: Medicine (Baltimore)
https://read.qxmd.com/read/38354706/efficient-production-of-a-thermostable-mutant-of-transglutaminase-by-streptomyces-mobaraensis
#15
JOURNAL ARTICLE
Jiacai Ye, Penghui Yang, Jingwen Zhou, Guocheng Du, Song Liu
The transglutaminase (TGase) from Streptomyces mobaraensis is widely used to improve the texture of protein-based foods. However, wild-type TGase is not heat-resistant, which is unfavorable for its application. In this study, we successfully constructed a S. mobaraensis strain that can efficiently produce TGm2, a thermostable mutant of S. mobaraensis TGase. First, S. mobaraensis DSM40587 was subjected to atmospheric room temperature plasma mutagenesis, generating mutant smY2022 with a 12.2-fold increase in TGase activity...
February 14, 2024: Journal of Agricultural and Food Chemistry
https://read.qxmd.com/read/38291238/identification-of-inflammatory-biomarkers-in-iga-nephropathy-using-the-nanostring-technology-a-validation-study-in-caucasians
#16
JOURNAL ARTICLE
Laurence Gaumond, Caroline Lamarche, Stéphanie Beauchemin, Nathalie Henley, Naoual Elftouh, Casimiro Gerarduzzi, Louis-Philippe Laurin
OBJECTIVE AND DESIGN: Immunoglobulin A nephropathy (IgAN) is a kidney disease characterized by the accumulation of IgA deposits in the glomeruli of the kidney, leading to inflammation and damage to the kidney. The inflammatory markers involved in IgAN remain to be defined. Gene expression analysis platforms, such as the NanoString nCounter system, are promising screening and diagnostic tools, especially in oncology. Still, their role as a diagnostic and prognostic tool in IgAN remains scarce...
January 31, 2024: Inflammation Research: Official Journal of the European Histamine Research Society ... [et Al.]
https://read.qxmd.com/read/38215751/a-gapdh-serotonylation-system-couples-cd8-t%C3%A2-cell-glycolytic-metabolism-to-antitumor-immunity
#17
JOURNAL ARTICLE
Xu Wang, Sheng-Qiao Fu, Xiao Yuan, Feng Yu, Qian Ji, Hao-Wen Tang, Rong-Kun Li, Shan Huang, Pei-Qi Huang, Wei-Ting Qin, Hao Zuo, Chang Du, Lin-Li Yao, Hui Li, Jun Li, Dong-Xue Li, Yan Yang, Shu-Yu Xiao, Aziguli Tulamaiti, Xue-Feng Wang, Chun-Hua Dai, Xu Zhang, Shu-Heng Jiang, Li-Peng Hu, Xue-Li Zhang, Zhi-Gang Zhang
Apart from the canonical serotonin (5-hydroxytryptamine [5-HT])-receptor signaling transduction pattern, 5-HT-involved post-translational serotonylation has recently been noted. Here, we report a glyceraldehyde-3-phosphate dehydrogenase (GAPDH) serotonylation system that promotes the glycolytic metabolism and antitumor immune activity of CD8+ T cells. Tissue transglutaminase 2 (TGM2) transfers 5-HT to GAPDH glutamine 262 and catalyzes the serotonylation reaction. Serotonylation supports the cytoplasmic localization of GAPDH, which induces a glycolytic metabolic shift in CD8+ T cells and contributes to antitumor immunity...
January 4, 2024: Molecular Cell
https://read.qxmd.com/read/38190126/exploring-corneal-neovascularization-an-integrated-approach-using-transcriptomics-and-proteomics-in-an-alkali-burn-mouse-model
#18
JOURNAL ARTICLE
Wei Wang, Manli Deng, Min Li, Lin Liu, Jun Zou, Yiyong Qian
PURPOSE: Corneal neovascularization (CNV) impairs corneal transparency and visual acuity. The study aims to deepen our understanding of the molecules involved in CNV induced by alkali burns, facilitate a better grasp of CNV mechanisms, and uncover potential therapeutic targets. METHODS: Eighty-four mice were selected for establishing CNV models via alkali burns. On days 3, 7, and 14 after the burns, corneal observations and histological investigations were conducted...
January 2, 2024: Investigative Ophthalmology & Visual Science
https://read.qxmd.com/read/38153537/hexahydrocurcumin-attenuated-demyelination-and-improved-cognitive-impairment-in-chronic-cerebral-hypoperfusion-rats
#19
JOURNAL ARTICLE
Pranglada Jearjaroen, Phakkawat Thangwong, Chainarong Tocharus, Waraluck Chaichompoo, Apichart Suksamrarn, Jiraporn Tocharus
Age-related white matter lesions (WML) frequently present vascular problems by decreasing cerebral blood supply, resulting in the condition known as chronic cerebral hypoperfusion (CCH). This study aimed to investigate the effect of hexahydrocurcumin (HHC) on the processes of demyelination and remyelination induced by the model of the Bilateral Common Carotid Artery Occlusion (BCCAO) for 29 days to mimic the CCH condition. The pathological appearance of myelin integrity was significantly altered by CCH, as evidenced by Transmission Electron Microscopy (TEM) and Luxol Fast Blue (LFB) staining...
December 28, 2023: Inflammopharmacology
https://read.qxmd.com/read/38085503/dioscin-impedes-proliferation-metastasis-and-enhances-autophagy-of-gastric-cancer-cells-via-regulating-the-usp8-tgm2-pathway
#20
JOURNAL ARTICLE
Ting Ma, Xinguo Ge, Jie Zhu, Chengxin Song, Pinhao Wang, Jiali Cai
Gastric cancer (GC) is one of the most common cancers worldwide. Dioscin has been shown to have anti-cancer effects in GC. The aim of this study is to explore a novel mechanism of dioscin in repressing GC progression. Cell viability, proliferation, apoptosis and invasion were measured by 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT), 5-ethynyl-2'-deoxyuridine (EdU), flow cytometry and transwell assays, respectively. Monodansylcadaverine (MDC) staining was used to assess cell autophagy...
December 12, 2023: Molecular Biotechnology
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