Jing Xiao, Xinyang Yu, Fanlin Meng, Yuncong Zhang, Wenbin Zhou, Yonghong Ren, Jingxia Li, Yimin Sun, Hongwei Sun, Guokai Chen, Ke He, Ligong Lu
Single cell RNA sequencing (scRNA-seq), a powerful tool for studying the tumor microenvironment (TME), does not preserve/provide spatial information on tissue morphology and cellular interactions. To understand the crosstalk between diverse cellular components in proximity in the TME, we performed scRNA-seq coupled with spatial transcriptomic (ST) assay to profile 41,700 cells from three colorectal cancer (CRC) tumor-normal-blood pairs. Standalone scRNA-seq analyses revealed eight major cell populations, including B cells, T cells, Monocytes, NK cells, Epithelial cells, Fibroblasts, Mast cells, Endothelial cells...
May 10, 2024: Cell Death & Disease