keyword
https://read.qxmd.com/read/38610465/simulation-validation-of-an-8-channel-parallel-transmit-dipole-array-on-an-infant-phantom-including-rf-losses-for-robust-correlation-with-experimental-results
#1
JOURNAL ARTICLE
Jérémie Daniel Clément, Özlem Ipek
It is crucial to demonstrate a robust correlation between the simulated and manufactured parallel-transmit (pTx) arrays performances to release the currently-used, very restrictive safety margins. In this study, we describe the qualitative and quantitative validation of a simulation model with respect to experimental results for an 8-channel dipole array at 7T. An approach that includes the radiofrequency losses into the simulation model is presented and compared to simulation models neglecting these losses...
April 1, 2024: Sensors
https://read.qxmd.com/read/38580917/hmgb1-prefers-to-interact-with-structural-rnas-and-regulates-rrna-methylation-modification-and-translation-in-hela-cells
#2
JOURNAL ARTICLE
Meimei Liao, Jiarui Cao, Wen Chen, Mengwei Wang, Zhihui Jin, Jia Ye, Yijun Ren, Yaxun Wei, Yaqiang Xue, Dong Chen, Yi Zhang, Sen Chen
BACKGROUND: High-mobility group B1 (HMGB1) is both a DNA binding nuclear factor modulating transcription and a crucial cytokine that mediates the response to both infectious and noninfectious inflammation such as autoimmunity, cancer, trauma, and ischemia reperfusion injury. HMGB1 has been proposed to control ribosome biogenesis, similar as the other members of a class of HMGB proteins. RESULTS: Here, we report that HMGB1 selectively promotes transcription of genes involved in the regulation of transcription, osteoclast differentiation and apoptotic process...
April 5, 2024: BMC Genomics
https://read.qxmd.com/read/38570351/lc-ms-characterization-and-stability-assessment-elucidate-correlation-between-charge-variant-composition-and-degradation-of-monoclonal-antibody-therapeutics
#3
JOURNAL ARTICLE
Himanshu Malani, Anuj Shrivastava, Neh Nupur, Anurag S Rathore
Aggregation stability of monoclonal antibody (mAb) therapeutics is influenced by many critical quality attributes (CQA) such as charge and hydrophobic variants in addition to environmental factors. In this study, correlation between charge heterogeneity and stability of mAbs for bevacizumab and trastuzumab has been investigated under a variety of stresses including thermal stress at 40 °C, thermal stress at 55 °C, shaking (mechanical), and low pH. Size- and charge-based heterogeneities were monitored using analytical size exclusion chromatography (SEC) and cation exchange chromatography (CEX), respectively, while dynamic light scattering was used to assess changes in hydrodynamic size...
April 3, 2024: AAPS Journal
https://read.qxmd.com/read/38568279/voxel-wise-fusion-of-3t-and-7t-diffusion-mri-data-to-extract-more-accurate-fiber-orientations
#4
JOURNAL ARTICLE
Zhanxiong Wu, Xinmeng Weng, Jian Shen, Ming Hong
While 7T diffusion magnetic resonance imaging (dMRI) has high spatial resolution, its diffusion imaging quality is usually affected by signal loss due to B1 inhomogeneity, T2 decay, susceptibility, and chemical shift. In contrast, 3T dMRI has relative higher diffusion angular resolution, but lower spatial resolution. Combination of 3T and 7T dMRI, thus, may provide more detailed and accurate information about the voxel-wise fiber orientations to better understand the structural brain connectivity. However, this topic has not yet been thoroughly explored until now...
April 3, 2024: Brain Topography
https://read.qxmd.com/read/38564194/expression-of-collagen-xiii-in-tissues-of-the-thyroid-and-orbit-with-relevance-to-thyroid-associated-ophthalmopathy
#5
JOURNAL ARTICLE
Oula Norman, Tuuli Vornanen, Hanna Franssila, Johanna Liinamaa, Elina Karvonen, Tommi Kotkavaara, Vesa-Matti Pohjanen, Ritva Ylikärppä, Taina Pihlajaniemi, Merja Hurskainen, Anne Heikkinen
PURPOSE: Antibodies against collagen XIII have previously been identified in patients with active thyroid-associated ophthalmopathy (TAO). Although collagen XIII expression has been described in extraocular muscles and orbital fat, its detailed localization in extraocular and thyroid tissues and the connection to autoimmunity for collagen XIII remain unclear. Our objective was to map the potential targets for these antibodies in the tissues of the orbit and thyroid. METHODS: We evaluated the expression of collagen XIII in human patient and mouse orbital and thyroid tissues with immunostainings and RT-qPCR using Col13a1-/- mice as negative controls...
April 1, 2024: Investigative Ophthalmology & Visual Science
https://read.qxmd.com/read/38552938/integrative-experimental-validation-of-concomitant-mirnas-and-transcription-factors-with-differentially-expressed-genes-in-acute-myocardial-infarction
#6
JOURNAL ARTICLE
Vikash Sharma, Jitender Singh, Ashish Kumar, Samarth Kansara, Md Sayeed Akhtar, Mohd Faiyaz Khan, Saad A Aldosari, Monalisa Mukherjee, Arun K Sharma
Identification of concomitant miRNAs and transcription factors (TFs) with differential expression (DEGs) in MI is crucial for understanding holistic gene regulation, identifying key regulators, and precision in biomarker and therapeutic target discovery. We performed a comprehensive analysis using Affymetrix microarray data, advanced bioinformatic tools, and experimental validation to explore potential biomarkers associated with human pathology. The search strategy includes the identification of the GSE83500 dataset, comprising gene expression profiles from aortic wall punch biopsies of MI and non-MI patients, which were used in the present study...
March 27, 2024: European Journal of Pharmacology
https://read.qxmd.com/read/38547935/dynamic-parallel-transmit-diffusion-mri-at-7t
#7
JOURNAL ARTICLE
Minghao Zhang, Belinda Ding, Iulius Dragonu, Patrick Liebig, Christopher T Rodgers
Diffusion MRI (dMRI) is inherently limited by SNR. Scanning at 7 T increases intrinsic SNR but 7 T MRI scans suffer from regions of signal dropout, especially in the temporal lobes and cerebellum. We applied dynamic parallel transmit (pTx) to allow whole-brain 7 T dMRI and compared with circularly polarized (CP) pulses in 6 subjects. Subject-specific 2-spoke dynamic pTx pulses were designed offline for 8 slabs covering the brain. We used vendor-provided B0 and B1 + mapping. Spokes positions were set using the Fourier difference approach, and RF coefficients optimized with a Jacobi-matrix high-flip-angle optimizer...
March 26, 2024: Magnetic Resonance Imaging
https://read.qxmd.com/read/38533593/evaluation-of-the-performance-of-a-7-t-8%C3%A2-%C3%A3-%C3%A2-2-transceiver-array
#8
JOURNAL ARTICLE
Junghwan Kim, Changyu Sun, Chan Hong Moon, Hoby Hetherington, Jullie Pan
The decoupled 8 × 2 transceiver array has been shown to achieve a mean B1 + of 11.7 uT with a coefficient of variation of ~11% over the intracranial brain volume for 7-T MR imaging. However, this array may be thought to give lower signal-to-noise ratio (SNR) and higher g-factors for parallel imaging compared with a radio frequency (RF) receive-only coil due to the latter's higher coil count and use of coil overlap to reduce the mutual impedance. Nonetheless, because the transceiver's highly decoupled design (pertinent for transmission) should also be constructive for reception, we measured the noise correlation, g-factors, and SNR for the decoupled transceiver in comparison with a commercial reference coil...
March 27, 2024: NMR in Biomedicine
https://read.qxmd.com/read/38532362/a-transcriptome-wide-identification-of-atp-binding-cassette-abc-transporters-revealed-participation-of-abcb-subfamily-in-abiotic-stress-management-of-glycyrrhiza-glabra-l
#9
JOURNAL ARTICLE
Ritu Devi, Pooja Goyal, Bhawna Verma, Shahnawaz Hussain, Fariha Chowdhary, Palak Arora, Suphla Gupta
Transcriptome-wide survey divulged a total of 181 ABC transporters in G. glabra which were phylogenetically classified into six subfamilies. Protein-Protein interactions revealed nine putative GgABCBs (-B6, -B14, -B15, -B25, -B26, -B31, -B40, -B42 &-B44) corresponding to five AtABCs orthologs (-B1, -B4, -B11, -B19, &-B21). Significant transcript accumulation of ABCB6 (31.8 folds), -B14 (147.5 folds), -B15 (17 folds), -B25 (19.7 folds), -B26 (18.31 folds), -B31 (61.89 folds), -B40 (1273 folds) and -B42 (51 folds) was observed under the influence of auxin...
March 27, 2024: BMC Genomics
https://read.qxmd.com/read/38522624/induced-saturation-transfer-recovery-steady-states-istress-for-proton-exchange-rate-mapping-with-cest-mri-a-preliminary-study
#10
JOURNAL ARTICLE
Mehran Shaghaghi, Frederick C Damen, Weiguo Li, Leon M Tai, Kejia Cai
Proton exchange underpins essential mechanisms in diverse MR imaging contrasts. Omega plots have proven effective in mapping proton exchange rates (kex ) in live human brains, enabling the differentiation of MS lesion activities and characterization of ischemic stroke. However, Omega plots require extended saturation durations (typically 5 to 10 s), resulting in high specific absorption rates (SAR) that can hinder clinical feasibility. In this study, we introduce a novel kex mapping approach, named induced Saturation Transfer Recovery Steady-States (iSTRESS)...
March 22, 2024: Magnetic Resonance Imaging
https://read.qxmd.com/read/38513790/phase-sensitive-deep-reconstruction-method-for-rapid-multiparametric-mr-fingerprinting-and-quantitative-susceptibility-mapping-in-the-brain
#11
JOURNAL ARTICLE
Jessica A Martinez, Victoria Y Yu, Kathryn R Tringale, Ricardo Otazo, Ouri Cohen
INTRODUCTION: This study explores the potential of Magnetic Resonance Fingerprinting (MRF) with a novel Phase-Sensitivity Deep Reconstruction Network (PS-DRONE) for simultaneous quantification of T1, T2, Proton Density, B1+, phase and quantitative susceptibility mapping (QSM). METHODS: Data were acquired at 3 T in vitro and in vivo using an optimized EPI-based MRF sequence. Phantom experiments were conducted using a standardized phantom for T1 and T2 maps and a custom-made agar-based gadolinium phantom for B1 and QSM maps...
June 2024: Magnetic Resonance Imaging
https://read.qxmd.com/read/38486454/dissecting-the-molecular-basis-of-spike-traits-by-integrating-gene-regulatory-network-and-genetic-variation-in-wheat
#12
JOURNAL ARTICLE
Guo Ai, Chao He, Siteng Bi, Ziru Zhou, Ankui Liu, Xin Hu, Yanyan Liu, Liujie Jin, JiaCheng Zhou, Heping Zhang, Dengxiang Du, Hao Chen, Xin Gong, Sulaiman Saeed, Handong Su, Caixia Lan, Wei Chen, Qiang Li, Hailiang Mao, Lin Li, Hao Liu, Dijun Chen, Kerstin Kaufmann, Khaled F Alazab, Wenhao Yan
Spike architecture influences both grain weight and grain number per spike, which are the two major components of grain yield in bread wheat (Triticum aestivum L.). However, the complex wheat genome and the influence of various environmental factors pose challenges in mapping the causal genes affecting the spike traits. Here, we systematically identify genes involved in spike trait formation by integrating the information of genomic variation and gene regulatory network (GRN) controlling young spike development in wheat...
March 14, 2024: Plant communications
https://read.qxmd.com/read/38439522/mr-based-electrical-property-tomography-using-a-physics-informed-network-at-3-and-7%C3%A2-t
#13
JOURNAL ARTICLE
Mengxuan Zheng, Feiyang Lou, Yiman Huang, Sihong Pan, Xiaotong Zhang
Magnetic resonance electrical propert tomography promises to retrieve electrical properties (EPs) quantitatively and non-invasively in vivo, providing valuable information for tissue characterization and pathology diagnosis. However, its clinical implementation has been hindered by, for example, B1 measurement accuracy, reconstruction artifacts resulting from inaccuracies in underlying models, and stringent hardware/software requirements. To address these challenges, we present a novel approach aimed at accurate and high-resolution EPs reconstruction based on water content maps by using a physics-informed network (PIN-wEPT)...
March 4, 2024: NMR in Biomedicine
https://read.qxmd.com/read/38425471/nodal-recurrence-mapping-and-clinical-target-volumes-after-resection-of-intrahepatic-cholangiocarcinoma-or-combined-hepatocellular-cholangiocarcinoma
#14
JOURNAL ARTICLE
Zhuanbo Yang, Liming Wang, Yirui Zhai, Jianjun Zhao, Feng Ye, Shulian Wang, Liming Jiang, Yan Song, Yongkun Sun, Ji Zhu, Yuan Tang, Yueping Liu, Yongwen Song, Hui Fang, Ning Li, Shunan Qi, Ningning Lu, Ye-Xiong Li, Hong Zhao, Bo Chen
BACKGROUND: Scarce evidence exists for clinical target volume (CTV) definitions of regional lymph nodes (LNs) in intrahepatic cholangiocarcinoma (iCCA) or combined hepatocellular-cholangiocarcinoma (cHCC-CCA). We investigated the mapping pattern of nodal recurrence after surgery for iCCA and cHCC-CCA and provided evidence for the nodal CTV definition. METHODS: We retrospectively reviewed the medical records of patients with iCCA or cHCC-CCA who underwent surgery between 2010 and 2020...
March 2024: Clinical and Translational Radiation Oncology
https://read.qxmd.com/read/38408694/phosphorus-31-a-table-top-method-for-3d-b-1-field-amplitude-and-phase-measurements
#15
REVIEW
V Brandejsky, O Leinhard Dahlqvist, E Lund, P Lundberg
A novel method of high-spatial-resolution, 3D B1 -field distribution measurements is presented. The method is independent of the MR-scanner, and it allows for automated acquisitions of complete maps of all magnetic field vector components for both proton and heteronuclear MR coils of arbitrary geometrical shapes. The advantage of the method proposed here, compared with methods based on measurements with an MR-scanner, is that a complete image of both receive and transmit B1 -fields, including the phase of the B1 -field, can be acquired...
February 24, 2024: Biochimica et Biophysica Acta. Biomembranes
https://read.qxmd.com/read/38393620/an-automatic-grading-system-for-orthodontically-induced-external-root-resorption-based-on-deep-convolutional-neural-network
#16
JOURNAL ARTICLE
Shuxi Xu, Houli Peng, Lanxin Yang, Wenjie Zhong, Xiang Gao, Jinlin Song
Orthodontically induced external root resorption (OIERR) is a common complication of orthodontic treatments. Accurate OIERR grading is crucial for clinical intervention. This study aimed to evaluate six deep convolutional neural networks (CNNs) for performing OIERR grading on tooth slices to construct an automatic grading system for OIERR. A total of 2146 tooth slices of different OIERR grades were collected and preprocessed. Six pre-trained CNNs (EfficientNet-B1, EfficientNet-B2, EfficientNet-B3, EfficientNet-B4, EfficientNet-B5, and MobileNet-V3) were trained and validated on the pre-processed images based on four different cross-validation methods...
February 23, 2024: J Imaging Inform Med
https://read.qxmd.com/read/38366129/fast-online-spectral-spatial-pulse-design-for-subject-specific-fat-saturation-in-cervical-spine-and-foot-imaging-at-1-5%C3%A2-t
#17
JOURNAL ARTICLE
Christian Karl Eisen, Patrick Liebig, Jürgen Herrler, Dieter Ritter, Simon Lévy, Michael Uder, Armin Michael Nagel, David Grodzki
OBJECTIVE: To compensate subject-specific field inhomogeneities and enhance fat pre-saturation with a fast online individual spectral-spatial (SPSP) single-channel pulse design. METHODS: The RF shape is calculated online using subject-specific field maps and a predefined excitation k-space trajectory. Calculation acceleration options are explored to increase clinical viability. Four optimization configurations are compared to a standard Gaussian spectral selective pre-saturation pulse and to a Dixon acquisition using phantom and volunteer (N = 5) data at 1...
February 17, 2024: Magma
https://read.qxmd.com/read/38343093/comprehensive-7%C3%A2-t-cest-a-clinical-mri-protocol-covering-multiple-exchange-rate-regimes
#18
JOURNAL ARTICLE
Moritz Simon Fabian, Junaid Rasool Rajput, Jan-Rüdiger Schüre, Simon Weinmüller, Angelika Mennecke, Tim Alexius Möhle, Stefan Rampp, Manuel Schmidt, Arnd Dörfler, Moritz Zaiss
Chemical exchange saturation transfer (CEST) is a magnetic resonance (MR) imaging method providing molecular image contrasts based on indirect detection of low concentrated solutes. Previous CEST studies focused predominantly on the imaging of single CEST exchange regimes (e.g., slow, intermediate or fast exchanging groups). In this work, we aim to establish a so-called comprehensive CEST protocol for 7 T, covering the different exchange regimes by three saturation B1 amplitude regimes: low, intermediate and high...
February 11, 2024: NMR in Biomedicine
https://read.qxmd.com/read/38305462/the-minimum-admissible-detuning-efficiency-of-mri-receive-only-surface-coils
#19
JOURNAL ARTICLE
Sina Marhabaie, Aimé Labbé, Bruno Quesson, Marie Poirier-Quinot
BACKGROUND: The minimum admissible detuning efficiency (DE) of a receive coil is an essential parameter for coil designers. A receive coil with inefficient detuning leads to inhomogeneous B1 during excitation. Previously proposed criteria for quantifying the DE rely on indirect measurements and are difficult to implement. PURPOSE: To present an alternative method to quantify the DE of receive-only surface coils. STUDY TYPE: Theoretical study supported by simulations and phantom experiments...
February 2, 2024: Journal of Magnetic Resonance Imaging: JMRI
https://read.qxmd.com/read/38297511/analytical-corrections-for-b-1-inhomogeneity-and-signal-decay-in-multi-slice-2d-spiral-hyperpolarized-129-xe-mri-using-keyhole-reconstruction
#20
JOURNAL ARTICLE
J W Plummer, R Hussain, A S Bdaiwi, M L Costa, M M Willmering, J Parra-Robles, Z I Cleveland, L L Walkup
PURPOSE: Hyperpolarized xenon MRI suffers from heterogeneous coil bias and magnetization decay that obscure pulmonary abnormalities. Non-physiological signal variability can be mitigated by measuring and mapping the nominal flip angle, and by rescaling the images to correct for signal bias and decay. While flip angle maps can be calculated from sequentially acquired images, scan time and breath-hold duration are doubled. Here, we exploit the low-frequency oversampling of 2D-spiral and keyhole reconstruction to measure flip angle maps from a single acquisition...
January 31, 2024: Magnetic Resonance in Medicine
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