keyword
https://read.qxmd.com/read/38330160/evolution-of-intermediate-latency-strategies-in-seasonal-parasites
#41
JOURNAL ARTICLE
Hannelore MacDonald, Dustin Brisson
Traditional mechanistic trade-offs between transmission and parasite latency period length are foundational for nearly all theory on the evolution of parasite life history strategies. Prior theoretical studies demonstrate that seasonal host activity can generate a trade-off for obligate-host killer parasites that selects for intermediate latency periods in the absence of a mechanistic trade-off between transmission and latency period lengths. Extensions of these studies predict that host seasonal patterns can lead to evolutionary bistability for obligate- host killer parasites in which two evolutionarily stable strategies, a shorter and longer latency period, are possible...
February 8, 2024: Journal of Evolutionary Biology
https://read.qxmd.com/read/38297119/shr-and-scr-coordinate-root-patterning-and-growth-early-in-the-cell-cycle
#42
JOURNAL ARTICLE
Cara M Winter, Pablo Szekely, Vladimir Popov, Heather Belcher, Raina Carter, Matthew Jones, Scott E Fraser, Thai V Truong, Philip N Benfey
Precise control of cell division is essential for proper patterning and growth during the development of multicellular organisms. Coordination of formative divisions that generate new tissue patterns with proliferative divisions that promote growth is poorly understood. SHORTROOT (SHR) and SCARECROW (SCR) are transcription factors that are required for formative divisions in the stem cell niche of Arabidopsis roots1,2 . Here we show that levels of SHR and SCR early in the cell cycle determine the orientation of the division plane, resulting in either formative or proliferative cell division...
January 31, 2024: Nature
https://read.qxmd.com/read/38296946/high-throughput-computational-stacking-reveals-emergent-properties-in-natural-van-der-waals-bilayers
#43
JOURNAL ARTICLE
Sahar Pakdel, Asbjørn Rasmussen, Alireza Taghizadeh, Mads Kruse, Thomas Olsen, Kristian S Thygesen
Stacking of two-dimensional (2D) materials has emerged as a facile strategy for realising exotic quantum states of matter and engineering electronic properties. Yet, developments beyond the proof-of-principle level are impeded by the vast size of the configuration space defined by layer combinations and stacking orders. Here we employ a density functional theory (DFT) workflow to calculate interlayer binding energies of 8451 homobilayers created by stacking 1052 different monolayers in various configurations...
January 31, 2024: Nature Communications
https://read.qxmd.com/read/38285724/enhanced-fault-diagnosis-via-stochastic-resonance-in-a-piecewise-asymmetric-bistable-system
#44
JOURNAL ARTICLE
Yongge Li, Qixiao Zhu, Yong Xu, Ruilan Tian
Weak fault signals are often overwhelmed by strong noise or interference. The key issue in fault diagnosis is to accurately extract useful fault characteristics. Stochastic resonance is an important signal processing method that utilizes noise to enhance weak signals. In this paper, to address the issues of output saturation and imperfect optimization of potential structure models in classical bistable stochastic resonance (CBSR), we propose a piecewise asymmetric stochastic resonance system. A two-state model is used to theoretically derive the output signal-to-noise ratio (SNR) of the bistable system under harmonic excitations, which is compared with the SNR of CBSR to demonstrate the superiority of the method...
January 1, 2024: Chaos
https://read.qxmd.com/read/38275191/long-range-ordering-of-velocity-aligned-active-polymers
#45
JOURNAL ARTICLE
Vladimir Yu Rudyak, Alexander Lopushenko, Vladimir V Palyulin, Alexander V Chertovich
In this work, we study the effect of covalent bonding on the behavior of non-equilibrium systems with the active force acting on particles along their velocity. Self-ordering of single particles does not occur in this model. However, starting from some critical polymerization degree, the ordered state is observed. It is homogeneous and exhibits no phase separation. In the ordered state, the chains prefer a near-two-dimensional configuration and all move in one direction. Importantly, the self-ordering is obtained only at intermediate active force magnitudes...
January 28, 2024: Journal of Chemical Physics
https://read.qxmd.com/read/38243457/bifurcation-analysis-of-complex-switching-oscillations-in-a-kerr-microring-resonator
#46
JOURNAL ARTICLE
Rodrigues D Dikandé Bitha, Andrus Giraldo, Neil G R Broderick, Bernd Krauskopf
Microresonators are micron-scale optical systems that confine light using total internal reflection. These optical systems have gained interest in the past two decades due to their compact sizes, unprecedented measurement capabilities, and widespread applications. The increasingly high finesse (or Q factor) of such resonators means that nonlinear effects are unavoidable even for low power, making them attractive for nonlinear applications, including optical comb generation and second harmonic generation. In addition, light in these nonlinear resonators may exhibit chaotic behavior across wide parameter regions...
December 2023: Physical Review. E
https://read.qxmd.com/read/38224853/stoichiometric-microplastics-models-in-natural-and-laboratory-environments
#47
JOURNAL ARTICLE
Tianxu Wang, Hao Wang
Microplastics pose a severe threat to marine ecosystems; however, relevant mathematical modeling and analysis are lacking. This paper formulates two stoichiometric producer-grazer models to investigate the interactive effects of microplastics, nutrients, and light on population dynamics under different settings. One model incorporates optimal microplastic uptake and foraging behavior based on nutrient availability for natural settings, while the other model does not include foraging in laboratory settings. We establish the well-posedness of the models and examine their long-term behaviors...
January 13, 2024: Journal of Theoretical Biology
https://read.qxmd.com/read/38215183/spiking-at-the-edge-excitability-at-interfaces-in-reaction-diffusion-systems
#48
JOURNAL ARTICLE
Colin Scheibner, Hillel Ori, Adam E Cohen, Vincenzo Vitelli
Excitable media, ranging from bioelectric tissues and chemical oscillators to forest fires and competing populations, are nonlinear, spatially extended systems capable of spiking. Most investigations of excitable media consider situations where the amplifying and suppressing forces necessary for spiking coexist at every point in space. In this case, spikes arise due to local bistabilities, which require a fine-tuned ratio between local amplification and suppression strengths. But, in nature and engineered systems, these forces can be segregated in space, forming structures like interfaces and boundaries...
January 16, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38213700/bifurcation-analysis-of-multistability-and-hysteresis-in-a-model-of-hiv-infection
#49
JOURNAL ARTICLE
I V Mironov, M Yu Khristichenko, Yu M Nechepurenko, D S Grebennikov, G A Bocharov
The infectious disease caused by human immunodeficiency virus type 1 (HIV-1) remains a serious threat to hu- man health. The current approach to HIV-1 treatment is based on the use of highly active antiretroviral therapy, which has side effects and is costly. For clinical practice, it is highly important to create functional cures that can enhance immune control of viral growth and infection of target cells with a subsequent reduction in viral load and restoration of the immune status. HIV-1 control efforts with reliance on immunotherapy remain at a conceptual stage due to the complexity of a set of processes that regulate the dynamics of infection and immune response...
December 2023: Vavilovskii Zhurnal Genetiki i Selektsii
https://read.qxmd.com/read/38202909/research-on-energy-harvesting-mechanism-and-low-power-technology-in-wireless-sensor-networks
#50
JOURNAL ARTICLE
Weimin Chen, Feng Tang, Fang Cui, Chen Chen
Wireless sensor networks (WSNs) are widely used in various fields such as military, industrial, and transportation for real-time monitoring, sensing, and data collection of different environments or objects. However, the development of WSNs is hindered by several limitations, including energy, storage space, computing power, and data transmission rate. Among these, the availability of power energy plays a crucial role as it directly determines the lifespan of WSN. To extend the life cycle of WSN, two key approaches are power supply improvement and energy conservation...
December 21, 2023: Sensors
https://read.qxmd.com/read/38202496/spontaneous-vibrations-and-stochastic-resonance-of-short-oligomeric-springs
#51
JOURNAL ARTICLE
Alexey M Astakhov, Vladislav S Petrovskii, Maria A Frolkina, Anastasia A Markina, Alexander D Muratov, Alexander F Valov, Vladik A Avetisov
There is growing interest in molecular structures that exhibit dynamics similar to bistable mechanical systems. These structures have the potential to be used as two-state operating units for various functional purposes. Particularly intriguing are the bistable systems that display spontaneous vibrations and stochastic resonance. Previously, via molecular dynamics simulations, it was discovered that short pyridine-furan springs in water, when subjected to stretching with power loads, exhibit the bistable dynamics of a Duffing oscillator...
December 22, 2023: Nanomaterials
https://read.qxmd.com/read/38202458/spontaneous-synchronization-of-two-bistable-pyridine-furan-nanosprings-connected-by-an-oligomeric-bridge
#52
JOURNAL ARTICLE
Anastasia A Markina, Maria A Frolkina, Alexander D Muratov, Vladislav S Petrovskii, Alexander F Valov, Vladik A Avetisov
The intensive development of nanodevices acting as two-state systems has motivated the search for nanoscale molecular structures whose long-term conformational dynamics are similar to the dynamics of bistable mechanical systems such as Euler arches and Duffing oscillators. Collective synchrony in bistable dynamics of molecular-sized systems has attracted immense attention as a potential pathway to amplify the output signals of molecular nanodevices. Recently, pyridine-furan oligomers of helical shape that are a few nanometers in size and exhibit bistable dynamics similar to a Duffing oscillator have been identified through molecular dynamics simulations...
December 19, 2023: Nanomaterials
https://read.qxmd.com/read/38193550/data-driven-dynamical-coarse-graining-for-condensed-matter-systems
#53
JOURNAL ARTICLE
Mauricio J Del Razo, Daan Crommelin, Peter G Bolhuis
Simulations of condensed matter systems often focus on the dynamics of a few distinguished components but require integrating the full system. A prime example is a molecular dynamics simulation of a (macro)molecule in a solution, where the molecule(s) and the solvent dynamics need to be integrated, rendering the simulations computationally costly and often unfeasible for physically/biologically relevant time scales. Standard coarse graining approaches can reproduce equilibrium distributions and structural features but do not properly include the dynamics...
January 14, 2024: Journal of Chemical Physics
https://read.qxmd.com/read/38189617/external-field-driven-property-localization-in-liquids-of-responsive-macromolecules
#54
JOURNAL ARTICLE
Arturo Moncho-Jordá, Sebastien Groh, Joachim Dzubiella
We explore theoretically the effects of external potentials on the spatial distribution of particle properties in a liquid of explicitly responsive macromolecules. In particular, we focus on the bistable particle size as a coarse-grained internal degree of freedom (DoF, or "property"), σ, that moves in a bimodal energy landscape, in order to model the response of a state-switching (big-to-small) macromolecular liquid to external stimuli. We employ a mean-field density functional theory (DFT) that provides the full inhomogeneous equilibrium distributions of a one-component model system of responsive colloids (RCs) interacting with a Gaussian pair potential...
January 14, 2024: Journal of Chemical Physics
https://read.qxmd.com/read/38149992/design-of-oscillatory-dynamics-in-numerical-simulations-of-compartment-based-enzyme-systems
#55
JOURNAL ARTICLE
Anna S Leathard, Paul A Beales, Annette F Taylor
Enzymatic reactions that yield non-neutral products are known to involve feedback due to the bell-shaped pH-rate curve of the enzyme. Compartmentalizing the reaction has been shown to lead to transport-driven oscillations in theory; however, there have been few reproducible experimental examples. Our objective was to determine how the conditions could be optimized to achieve pH oscillations. We employed numerical simulations to investigate the hydrolysis of ethyl acetate in a confined esterase enzyme system, examining the influence of key factors on its behavior...
December 1, 2023: Chaos
https://read.qxmd.com/read/38145964/mechanical-metamaterials-for-handwritten-digits-recognition
#56
JOURNAL ARTICLE
Lingling Wu, Yuyang Lu, Penghui Li, Yong Wang, Jiacheng Xue, Xiaoyong Tian, Shenhao Ge, Xiaowen Li, Zirui Zhai, Junqiang Lu, Xiaoli Lu, Dichen Li, Hanqing Jiang
The increasing needs for new types of computing lie in the requirements in harsh environments. In this study, the successful development of a non-electrical neural network is presented that functions based on mechanical computing. By overcoming the challenges of low mechanical signal transmission efficiency and intricate layout design methodologies, a mechanical neural network based on bistable kirigami-based mechanical metamaterials have designed. In preliminary tests, the system exhibits high reliability in recognizing handwritten digits and proves operable in low-temperature environments...
December 25, 2023: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38137928/multistable-protocells-can-aid-the-evolution-of-prebiotic-autocatalytic-sets
#57
JOURNAL ARTICLE
Angad Yuvraj Singh, Sanjay Jain
We present a simple mathematical model that captures the evolutionary capabilities of a prebiotic compartment or protocell. In the model, the protocell contains an autocatalytic set whose chemical dynamics is coupled to the growth-division dynamics of the compartment. Bistability in the dynamics of the autocatalytic set results in a protocell that can exist with two distinct growth rates. Stochasticity in chemical reactions plays the role of mutations and causes transitions from one growth regime to another...
December 12, 2023: Life
https://read.qxmd.com/read/38134760/bistability-in-radiatively-heated-melt-ponds
#58
JOURNAL ARTICLE
Rui Yang, Christopher J Howland, Hao-Ran Liu, Roberto Verzicco, Detlef Lohse
Melting and solidification processes, intertwined with convective flows, play a fundamental role in geophysical contexts. One of these processes is the formation of melt ponds on glaciers, ice shelves, and sea ice. It is driven by solar radiation and is of great significance for Earth's heat balance, as it significantly lowers the albedo. Through direct numerical simulations and theoretical analysis, we unveil a bistability phenomenon in the melt pond dynamics. As solar radiation intensity and the melt pond's initial depth vary, an abrupt transition occurs: this tipping point transforms the system from a stable fully frozen state to another stable equilibrium state, characterized by a distinct melt pond depth...
December 8, 2023: Physical Review Letters
https://read.qxmd.com/read/38133664/multistability-in-neural-systems-with-random-cross-connections
#59
JOURNAL ARTICLE
Jordan Breffle, Subhadra Mokashe, Siwei Qiu, Paul Miller
Neural circuits with multiple discrete attractor states could support a variety of cognitive tasks according to both empirical data and model simulations. We assess the conditions for such multistability in neural systems using a firing rate model framework, in which clusters of similarly responsive neurons are represented as single units, which interact with each other through independent random connections. We explore the range of conditions in which multistability arises via recurrent input from other units while individual units, typically with some degree of self-excitation, lack sufficient self-excitation to become bistable on their own...
December 22, 2023: Biological Cybernetics
https://read.qxmd.com/read/38132842/gestalt-s-perspective-on-insight-a-recap-based-on-recent-behavioral-and-neuroscientific-evidence
#60
REVIEW
Mary Vitello, Carola Salvi
The Gestalt psychologists' theory of insight problem-solving was based on a direct parallelism between perceptual experience and higher-order forms of cognition (e.g., problem-solving). Similarly, albeit not exclusively, to the sudden recognition of bistable figures, these psychologists contended that problem-solving involves a restructuring of one's initial representation of the problem's elements, leading to a sudden leap of understanding phenomenologically indexed by the "Aha!" feeling. Over the last century, different scholars have discussed the validity of the Gestalt psychologists' perspective, foremost using the behavioral measures available at the time...
December 9, 2023: Journal of Intelligence
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