keyword
https://read.qxmd.com/read/31968678/survival-associated-metabolic-genes-in-human-papillomavirus-positive-head-and-neck-cancers
#41
JOURNAL ARTICLE
Martin A Prusinkiewicz, Steven F Gameiro, Farhad Ghasemi, Mackenzie J Dodge, Peter Y F Zeng, Hanna Maekebay, John W Barrett, Anthony C Nichols, Joe S Mymryk
Human papillomavirus (HPV) causes an increasing number of head and neck squamous cell carcinomas (HNSCCs). Altered metabolism contributes to patient prognosis, but the impact of HPV status on HNSCC metabolism remains relatively uncharacterized. We hypothesize that metabolism-related gene expression differences unique to HPV-positive HNSCC influences patient survival. The Cancer Genome Atlas RNA-seq data from primary HNSCC patient samples were categorized as 73 HPV-positive, 442 HPV-negative, and 43 normal-adjacent control tissues...
January 20, 2020: Cancers
https://read.qxmd.com/read/31821401/restoration-of-myocellular-copper-trafficking-proteins-and-mitochondrial-copper-enzymes-repairs-cardiac-function-in-rats-with-diabetes-evoked-heart-failure
#42
JOURNAL ARTICLE
Shaoping Zhang, Hong Liu, Greeshma Vazhoor Amarsingh, Carlos C H Cheung, Donghai Wu, Umayal Narayanan, Linda Zhang, Garth J S Cooper
Diabetes impairs systemic copper regulation, and acts as a major independent risk factor for heart failure (HF) wherein mitochondrial dysfunction is a key pathogenic process. Here we asked whether diabetes might alter mitochondrial structure/function and thus impair cardiac performance by damaging myocellular pathways that mediate cell-copper homeostasis. We measured activity of major mitochondria-resident copper-enzymes cytochrome c oxidase (mt-Cco) and superoxide dismutase 1 (mt-Sod1); expression of three main mitochondrial copper-chaperones [Cco copper chaperone 17 (Cox17), Cox11, and mitochondria-resident copper chaperone for Sod1 (mt-Ccs)]; of copper-dependent Cco-assembly protein Sco1; and regulation of mitochondrial biogenesis, in left-ventricular (LV) tissue from groups of non-diabetic-control, untreated-diabetic, and divalent-copper-selective chelator-treated diabetic rats...
February 1, 2020: Metallomics: Integrated Biometal Science
https://read.qxmd.com/read/31820776/copper-nanoparticles-induce-zebrafish-intestinal-defects-via-endoplasmic-reticulum-and-oxidative-stress
#43
JOURNAL ARTICLE
Guang Zhao, Ting Zhang, HaoJie Sun, Jing-Xia Liu
As an essential trace element, copper plays key roles in the activation of multiple enzymes, neurotransmitter biosynthesis and denaturation, as well as the decomposition of superoxide and the synthesis of collagen. The intestines is the main organ for copper absorption and transfer, and intestinal copper accumulation is observed in some patients with gene mutations. However, a vertebrate model to link copper accumulation with intestinal diseases and defects is still lacking, and the data concerning the mechanisms underlying this link are still scarce...
December 10, 2019: Metallomics: Integrated Biometal Science
https://read.qxmd.com/read/31682224/function-of-htim8a-in-complex-iv-assembly-in-neuronal-cells-provides-insight-into-pathomechanism-underlying-mohr-tranebj%C3%A3-rg-syndrome
#44
JOURNAL ARTICLE
Yilin Kang, Alexander J Anderson, Thomas Daniel Jackson, Catherine S Palmer, David P De Souza, Kenji M Fujihara, Tegan Stait, Ann E Frazier, Nicholas J Clemons, Deidreia Tull, David R Thorburn, Malcolm J McConville, Michael T Ryan, David A Stroud, Diana Stojanovski
Human Tim8a and Tim8b are members of an intermembrane space chaperone network, known as the small TIM family. Mutations in TIMM8A cause a neurodegenerative disease, Mohr-Tranebjærg syndrome (MTS), which is characterised by sensorineural hearing loss, dystonia and blindness. Nothing is known about the function of hTim8a in neuronal cells or how mutation of this protein leads to a neurodegenerative disease. We show that hTim8a is required for the assembly of Complex IV in neurons, which is mediated through a transient interaction with Complex IV assembly factors, in particular the copper chaperone COX17...
November 4, 2019: ELife
https://read.qxmd.com/read/31662245/transcriptional-profiles-and-copper-stress-responses-in-zebrafish-cox17-mutants
#45
JOURNAL ARTICLE
HaoJie Sun, MingYue Chen, ZiYang Wang, Guang Zhao, Jing-Xia Liu
While Cox17 functions importantly in copper metalation of cytochrome c oxidase and integral mitochondrial architecture in vertebrates, rare studies have been performed regarding the developmental and physiological characters of vertebrate cox17 mutants. In this study, normal-like developmental phenotype was observed in both cox17Δ6-/- and cox17Δ4-/- homozygous zebrafish mutants, while gene ontology term and pathway analysis of the differentially expressed genes in both mutants showed enrichment in oxidoreductase activity, ion transport, histone methylation, MICOS complex, Wnt signaling, etc...
October 11, 2019: Environmental Pollution
https://read.qxmd.com/read/31202068/biopesticide-spinosad-induces-transcriptional-alterations-in-genes-associated-with-energy-production-in-honey-bees-apis-mellifera-at-sublethal-concentrations
#46
JOURNAL ARTICLE
Verena Christen, Jana Krebs, Ivan Bünter, Karl Fent
Bees experience substantial colony losses, which are often associated with pesticides. Besides synthetic insecticides biological compounds such as spinosad are used in agriculture and organic farming against insect pests. However, potential adverse effect at sublethal concentrations to pollinators are poorly known. Here we aim to determine potential adverse outcome pathways of spinosad and to identify molecular effects by investigating transcriptional alterations in the brain of honey bees. We experimentally exposed bees to three sublethal concentrations of 0...
June 5, 2019: Journal of Hazardous Materials
https://read.qxmd.com/read/31139206/a-large-scale-genome-wide-association-study-in-u-s-holstein-cattle
#47
JOURNAL ARTICLE
Jicai Jiang, Li Ma, Dzianis Prakapenka, Paul M VanRaden, John B Cole, Yang Da
Genome-wide association study (GWAS) is a powerful approach to identify genomic regions and genetic variants associated with phenotypes. However, only limited mutual confirmation from different studies is available. We conducted a large-scale GWAS using 294,079 first-lactation Holstein cows and identified new additive and dominance effects on five production traits, three fertility traits, and somatic cell score. Four chromosomes had the most significant SNP effects on the five production traits, a Chr14 region containing DGAT1 mostly had positive effects on fat yield and negative effects on milk and protein yields, the 88...
2019: Frontiers in Genetics
https://read.qxmd.com/read/30798618/targeted-dna-methylation-profiling-of-human-cardiac-tissue-reveals-novel-epigenetic-traits-and-gene-deregulation-across-different-heart-failure-patient-subtypes
#48
JOURNAL ARTICLE
Nadezhda Glezeva, Bruce Moran, Patrick Collier, Christine S Moravec, Dermot Phelan, Eoin Donnellan, Adam Russell-Hallinan, Darran P O'Connor, William M Gallagher, Joe Gallagher, Kenneth McDonald, Mark Ledwidge, John Baugh, Sudipto Das, Chris J Watson
BACKGROUND: Limited knowledge exists of the extent of epigenetic alterations, such as DNA methylation, in heart failure (HF). We conducted targeted DNA methylation sequencing to identify DNA methylation alterations in coding and noncoding RNA (ncRNA) across different etiological subtypes of HF. METHODS AND RESULTS: A targeted bisulfite sequence capture sequencing platform was applied to DNA extracted from cardiac interventricular septal tissue of 30 male HF patients encompassing causes including hypertrophic obstructive cardiomyopathy, ischemic cardiomyopathy, dilated cardiomyopathy, and 9 control patients with nonfailing hearts...
March 2019: Circulation. Heart Failure
https://read.qxmd.com/read/30553148/excess-copper-promotes-photoinhibition-and-modulates-the-expression-of-antioxidant-related-genes-in-zostera-muelleri
#49
JOURNAL ARTICLE
Pimchanok Buapet, Nasim Shah Mohammadi, Mathieu Pernice, Manoj Kumar, Unnikrishnan Kuzhiumparambil, Peter J Ralph
Copper (Cu) is an essential micronutrient for plants and as such is vital to many metabolic processes. Nevertheless, when present at elevated concentrations, Cu can exert toxic effects on plants by disrupting protein functions and promoting oxidative stress. Due to their proximity to the urbanised estuaries, seagrasses are vulnerable to chemical contamination via industrial runoff, waste discharges and leachates. Zostera muelleri is a common seagrass species that forms habitats in the intertidal areas along the temperate coast of Australia...
December 5, 2018: Aquatic Toxicology
https://read.qxmd.com/read/30482256/the-effect-of-maternal-iron-deficiency-on-zinc-and-copper-levels-and-on-genes-of-zinc-and-copper-metabolism-during-pregnancy-in-the-rat
#50
JOURNAL ARTICLE
Sarah C Cottin, Guenievre Roussel, Lorraine Gambling, Helen E Hayes, Valerie J Currie, Harry J McArdle
Fe deficiency is relatively common in pregnancy and has both short- and long-term consequences. However, little is known about the effect on the metabolism of other micronutrients. A total of fifty-four female rats were fed control (50 mg Fe/kg) or Fe-deficient diets (7·5 mg/kg) before and during pregnancy. Maternal liver, placenta and fetal liver were collected at day 21 of pregnancy for Cu and Zn analysis and to measure expression of the major genes of Cu and Zn metabolism. Cu levels increased in the maternal liver (P=0·002) and placenta (P=0·018) of Fe-deficient rats...
January 2019: British Journal of Nutrition
https://read.qxmd.com/read/30388615/copper-inhibits-hatching-of-fish-embryos-via-inducing-reactive-oxygen-species-and-down-regulating-wnt-signaling
#51
JOURNAL ARTICLE
YanJun Zhang, RuiTao Zhang, HaoJie Sun, Qi Chen, XueDong Yu, Ting Zhang, Ming Yi, Jing-Xia Liu
The copper ion (Cu2+ ) has been reported to suppress the hatching of fish. However, little is known about the underlying mechanism. In this study, copper nanoparticles (CuNPs) and Cu2+ were shown to significantly suppress hatching of zebrafish in a dosage-dependent manner, and reactive oxygen species (ROS) scavengers NAC (N-acetylcysteine) & GSH (reduced glutathione) and Wnt signaling agonist BIO (6-bromoindirubin-3'-oxime) significantly alleviated the suppressing effects of Cu2+ and CuNPs on egg hatching...
October 24, 2018: Aquatic Toxicology
https://read.qxmd.com/read/30317392/the-nonsense-mediated-mrna-decay-nmd-pathway-differentially-regulates-cox17-cox19-and-cox23-mrnas
#52
JOURNAL ARTICLE
Kaitlin Murtha, Munok Hwang, Megan C Peccarelli, Taylor D Scott, Bessie W Kebaara
The differential regulation of COX17, COX19 and COX23 mRNAs by the nonsense-mediated mRNA decay (NMD) pathway was investigated. The NMD pathway regulates mRNAs that aberrantly terminate translation. This includes mRNAs harboring premature translation termination codons and natural mRNAs. Most natural mRNAs regulated by NMD encode fully functional proteins involved in various cellular processes. However, the cause and targeting of most of these mRNAs by the pathway is not understood. Analysis of a set of mRNAs involved in copper homeostasis showed that a subset of these mRNAs function in mitochondrial copper homeostasis...
April 2019: Current Genetics
https://read.qxmd.com/read/29396798/the-involvement-of-cytochrome-c-oxidase-in-mitochondrial-fusion-in-primary-cultures-of-neonatal-rat-cardiomyocytes
#53
JOURNAL ARTICLE
Wen Yin, Rui Li, Xiaorong Feng, Y James Kang
Cytochrome c oxidase (CCO) is a copper-dependent enzyme of mitochondrial respiratory chain. In pressure overload-induced cardiac hypertrophy, copper level and CCO activity are both depressed, along with disturbance in mitochondrial fusion and fission dynamics. Copper repletion leads to recovery of CCO activity and normalized mitochondrial dynamics. The present study was undertaken to define the link between CCO activity and mitochondrial dynamic changes. Primary cultures of neonatal rat cardiomyocytes were treated with phenylephrine to induce cell hypertrophy...
August 2018: Cardiovascular Toxicology
https://read.qxmd.com/read/29362485/copper-i-binding-properties-of-de-coppering-drugs-for-the-treatment-of-wilson-disease-%C3%AE-lipoic-acid-as-a-potential-anti-copper-agent
#54
JOURNAL ARTICLE
Julia Smirnova, Ekaterina Kabin, Ivar Järving, Olga Bragina, Vello Tõugu, Thomas Plitz, Peep Palumaa
Wilson disease is an autosomal recessive genetic disorder caused by loss-of-function mutations in the P-type copper ATPase, ATP7B, which leads to toxic accumulation of copper mainly in the liver and brain. Wilson disease is treatable, primarily by copper-chelation therapy, which promotes copper excretion. Although several de-coppering drugs are currently available, their Cu(I)-binding affinities have not been quantitatively characterized. Here we determined the Cu(I)-binding affinities of five major de-coppering drugs - D-penicillamine, trientine, 2,3-dimercapto-1-propanol, meso-2,3-dimercaptosuccinate and tetrathiomolybdate - by exploring their ability to extract Cu(I) ions from two Cu(I)-binding proteins, the copper chaperone for cytochrome c oxidase, Cox17, and metallothionein...
January 23, 2018: Scientific Reports
https://read.qxmd.com/read/29208936/disulfide-driven-folding-for-a-conditionally-disordered-protein
#55
JOURNAL ARTICLE
Hugo Fraga, Jordi Pujols, Marcos Gil-Garcia, Alicia Roque, Ganeko Bernardo-Seisdedos, Carlo Santambrogio, Joan-Josep Bech-Serra, Francesc Canals, Pau Bernadó, Rita Grandori, Oscar Millet, Salvador Ventura
Conditionally disordered proteins are either ordered or disordered depending on the environmental context. The substrates of the mitochondrial intermembrane space (IMS) oxidoreductase Mia40 are synthesized on cytosolic ribosomes and diffuse as intrinsically disordered proteins to the IMS, where they fold into their functional conformations; behaving thus as conditionally disordered proteins. It is not clear how the sequences of these polypeptides encode at the same time for their ability to adopt a folded structure and to remain unfolded...
December 5, 2017: Scientific Reports
https://read.qxmd.com/read/28978152/mitochondrial-markers-predict-recurrence-metastasis-and-tamoxifen-resistance-in-breast-cancer-patients-early-detection-of-treatment-failure-with-companion-diagnostics
#56
JOURNAL ARTICLE
Federica Sotgia, Marco Fiorillo, Michael P Lisanti
Here, we used a data-mining and informatics approach to discover new biomarkers of resistance to hormonal therapy in breast cancer. More specifically, we investigated whether nuclear-encoded genes associated with mitochondrial biogenesis can be used to predict tumor recurrence, distant metastasis and treatment failure in high-risk breast cancer patients. Overall, this strategy allowed us to directly provide in silico validation of the prognostic value of these mitochondrial components in large and clinically relevant patient populations, with >15 years of follow-up data...
September 15, 2017: Oncotarget
https://read.qxmd.com/read/28965931/integrated-microarray-analysis-provided-a-new-insight-of-the-pathogenesis-of-parkinson-s-disease
#57
JOURNAL ARTICLE
Ping Kong, Ping Lei, Shishuang Zhang, Dai Li, Jing Zhao, Benshu Zhang
BACKGROUND: Parkinson's disease (PD) is the second most common neurodegenerative disease and the exact pathogenic mechanism remains mostly elusive. Our study aims to identify the key differentially expressed genes (DEGs) and up regulators in PD. METHODS: An integrated analysis of microarray studies of PD was performed to identify the DEGs in PD compared to normal control (NC). Based on these DEGs, we performed the functional annotation and transcriptional regulatory network constructions...
January 1, 2018: Neuroscience Letters
https://read.qxmd.com/read/28965584/identification-of-eight-copper-cu-uptake-related-genes-from-yellow-catfish-pelteobagrus-fulvidraco-and-their-tissue-expression-and-transcriptional-responses-to-dietborne-cu-exposure
#58
JOURNAL ARTICLE
Jie Cheng, Zhi Luo, Guang-Hui Chen, Chuan-Chuan Wei, Mei-Qin Zhuo
The present working hypothesis is that absorption of dietary Cu is related to mRNA expressions of genes involved in Cu uptake and transport of the intestine in fish. To this end, the full-length cDNA sequences of eight Cu uptake related genes, including two isoforms of copper transporter genes (ctr1 and ctr2), three copper chaperone genes (atox1, ccs and cox17), two Cu-ATPase genes (atp7a and atp7b) and divalent metal ion transporter 1 (dmt1), were cloned and characterized in yellow catfish P. fulvidraco, respectively...
December 2017: Journal of Trace Elements in Medicine and Biology
https://read.qxmd.com/read/28938148/intestinal-epithelial-cell-injury-induced-by-copper-containing-nanoparticles-in-piglets
#59
JOURNAL ARTICLE
Hui Zhang, Xiaoxing Wu, Khalid Mehmood, Zhenyu Chang, Kun Li, Xiong Jiang, Fazul Nabi, Muhammad Ijaz, Mujeeb Ur Rehman, Muhammad Tariq Javed, Donghai Zhou
The nano copper has been widely used in modern clinical medicine practice. However, it has been noticed that nano copper particles induce cell injury and toxicity. The present study was designed to determine the effect of nano copper particles on cell injury of intestinal epithelial cells (IECs) in piglets. The IECs were treated with different doses of nano copper (5, 10, 20 and 40μg/ml) for 24-48h to observe cell injury and toxicity. Cell injury was measured based on morphological and other changes including oxidative stress and genes expression...
December 2017: Environmental Toxicology and Pharmacology
https://read.qxmd.com/read/28754844/mitochondrial-markers-predict-recurrence-metastasis-and-tamoxifen-resistance-in-breast-cancer-patients-early-detection-of-treatment-failure-with-companion-diagnostics
#60
JOURNAL ARTICLE
Federica Sotgia, Marco Fiorillo, Michael P Lisanti
Here, we used a data-mining and informatics approach to discover new biomarkers of resistance to hormonal therapy in breast cancer. More specifically, we investigated whether nuclear-encoded genes associated with mitochondrial biogenesis can be used to predict tumor recurrence, distant metastasis and treatment failure in high-risk breast cancer patients. Overall, this strategy allowed us to directly provide in silico validation of the prognostic value of these mitochondrial components in large and clinically relevant patient populations, with >15 years of follow-up data...
July 27, 2017: Oncotarget
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