keyword
https://read.qxmd.com/read/38410859/mmp12-is-a-potential-predictive-and-prognostic-biomarker-of-various-cancers-including-lung-adenocarcinoma
#21
JOURNAL ARTICLE
Guo-Sheng Li, Yu-Xing Tang, Wei Zhang, Jian-Di Li, He-Qing Huang, Jun Liu, Zong-Wang Fu, Rong-Quan He, Jin-Liang Kong, Hua-Fu Zhou, Gang Chen
OBJECTIVE: This study sought to explore the clinical value of matrix metalloproteinases 12 ( MMP12 ) in multiple cancers, including lung adenocarcinoma (LUAD). METHODS: Using >10,000 samples, this retrospective study demonstrated the first pan-cancer analysis of MMP12 . The expression of MMP12 between cancer groups and their control groups was analyzed using Wilcoxon rank-sum tests. The clinical significance of MMP12 expression in multiple cancers was assessed using receiver operating characteristic curves, Kaplan-Meier curves, and univariate Cox analysis...
2024: Cancer Control: Journal of the Moffitt Cancer Center
https://read.qxmd.com/read/38383607/intestinal-il-22ra1-signaling-regulates-intrinsic-and-systemic-lipid-and-glucose-metabolism-to-alleviate-obesity-associated-disorders
#22
JOURNAL ARTICLE
Stephen J Gaudino, Ankita Singh, Huakang Huang, Jyothi Padiadpu, Makheni Jean-Pierre, Cody Kempen, Tej Bahadur, Kiyoshi Shiomitsu, Richard Blumberg, Kenneth R Shroyer, Semir Beyaz, Natalia Shulzhenko, Andrey Morgun, Pawan Kumar
IL-22 is critical for ameliorating obesity-induced metabolic disorders. However, it is unknown where IL-22 acts to mediate these outcomes. Here we examine the importance of tissue-specific IL-22RA1 signaling in mediating long-term high fat diet (HFD) driven metabolic disorders. To do so, we generated intestinal epithelium-, liver-, and white adipose tissue (WAT)-specific Il22ra1 knockout and littermate control mice. Intestinal epithelium- and liver-specific IL-22RA1 signaling upregulated systemic glucose metabolism...
February 21, 2024: Nature Communications
https://read.qxmd.com/read/38377392/lysophospholipid-acyltransferase-9-promotes-emphysema-formation-via-platelet-activating-factor
#23
JOURNAL ARTICLE
Hiroaki Murano, Sumito Inoue, Tomomi Hashidate-Yoshida, Hideo Shindou, Takao Shimizu, Yoichiro Otaki, Yukihiro Minegishi, Takumi Kitaoka, Mitsuru Futakuchi, Akira Igarashi, Michiko Nishiwaki, Takako Nemoto, Masamichi Sato, Maki Kobayashi, Kento Sato, Toshinari Hanawa, Osamu Miyazaki, Masafumi Watanabe
Cigarette smoking is known to be the leading cause of chronic obstructive pulmonary disease (COPD). However, the detailed mechanisms have not been elucidated. Platelet-activating factor (PAF), a potent inflammatory mediator, is involved in the pathogenesis of various respiratory diseases, such as bronchial asthma or COPD. We focused on lysophospholipid acyltransferase 9 (LPLAT9), a biosynthetic enzyme of PAF, in the pathogenesis of COPD. LPLAT9 gene expression was observed in excised COPD lungs and single-cell RNA sequencing data of alveolar macrophage (AM)...
February 20, 2024: American Journal of Respiratory Cell and Molecular Biology
https://read.qxmd.com/read/38369593/fructose-regulates-the-pentose-phosphate-pathway-and-induces-an-inflammatory-and-resolution-phenotype-in-kupffer-cells
#24
JOURNAL ARTICLE
Mareca Lodge, Grace Scheidemantle, Victoria R Adams, Matthew A Cottam, Daniel Richard, Denitra Breuer, Peter Thompson, Kritika Shrestha, Xiaojing Liu, Arion Kennedy
Over-consumption of fructose in adults and children has been linked to increased risk of non-alcoholic fatty liver disease (NAFLD). Recent studies have highlighted the effect of fructose on liver inflammation, fibrosis, and immune cell activation. However, little work summarizes the direct impact of fructose on macrophage infiltration, phenotype, and function within the liver. We demonstrate that chronic fructose diet decreased Kupffer cell populations while increasing transitioning monocytes. In addition, fructose increased fibrotic gene expression of collagen 1 alpha 1 (Col1a1) and tissue metallopeptidase inhibitor 1 (Timp1) as well as inflammatory gene expression of tumor necrosis factor alpha (Tnfa) and expression of transmembrane glycoprotein NMB (Gpnmb) in liver tissue compared to glucose and control diets...
February 18, 2024: Scientific Reports
https://read.qxmd.com/read/38361765/qingfei-tongluo-mixture-attenuates-bleomycin-induced-pulmonary-inflammation-and-fibrosis-through-mtor-dependent-autophagy-in-rats
#25
JOURNAL ARTICLE
Shuyu Ge, Zhenghong Guo, Ting Xiao, Pingping Sun, Bo Yang, Yin Ying
As an interstitial fibrosis disease characterized by diffuse alveolitis and structural alveolar disorders, idiopathic pulmonary fibrosis (IPF) has high lethality but lacks limited therapeutic drugs. A hospital preparation used for the treatment of viral pneumonia, Qingfei Tongluo mixture (QFTL), is rumored to have protective effects against inflammatory and respiratory disease. This study aims to confirm whether it has a therapeutic effect on bleomycin-induced IPF in rats and to elucidate its mechanism of action...
2024: Mediators of Inflammation
https://read.qxmd.com/read/38350725/myeloid-mas-signaling-modulates-pathogenic-crosstalk-among-myc-cd63-endothelial-cells-mmp12-macrophages-and-monocytes-in-acetaminophen-induced-liver-injury
#26
JOURNAL ARTICLE
Shuai Chen, Zhi Lu, Yudong Zhao, Lu Xia, Chun Liu, Siqing Zuo, Manchang Jin, Haoyu Jia, Shanshan Li, Shuo Zhang, Bo Yang, Zhijing Wang, Jing Li, Fei Wang, Changqing Yang
Acetaminophen overdose is a leading cause of acute liver failure (ALF). Despite the pivotal role of the inflammatory microenvironment in the progression of advanced acetaminophen-induced liver injury (AILI), a comprehensive understanding of the underlying cellular interactions and molecular mechanisms remains elusive. Mas is a G protein-coupled receptor highly expressed by myeloid cells; however, its role in the AILI microenvironment remains to be elucidated. A multidimensional approach, including single-cell RNA sequencing, spatial transcriptomics, and hour-long intravital imaging, is employed to characterize the microenvironment in Mas1 deficient mice at the systemic and cell-specific levels...
February 13, 2024: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38348661/bay-9835-discovery-of-the-first-orally-bioavailable-adamts7-inhibitor
#27
JOURNAL ARTICLE
Daniel Meibom, Pierre Wasnaire, Kristin Beyer, Andreas Broehl, Yolanda Cancho-Grande, Nadine Elowe, Kerstin Henninger, Sarah Johannes, Natalia Jungmann, Tanja Krainz, Niels Lindner, Stefanie Maassen, Bryan MacDonald, Denis Menshykau, Joachim Mittendorf, Guzman Sanchez, Martina Schaefer, Eric Stefan, Afra Torge, Yi Xing, Dmitry Zubov
The matrix metalloprotease ADAMTS7 has been identified by multiple genome-wide association studies as being involved in the development of coronary artery disease. Subsequent research revealed the proteolytic function of the enzyme to be relevant for atherogenesis and restenosis after vessel injury. Based on a publicly known dual ADAMTS4/ADAMTS5 inhibitor, we have in silico designed an ADAMTS7 inhibitor of the catalytic domain, which served as a starting point for an optimization campaign. Initially our inhibitors suffered from low selectivity vs MMP12...
February 13, 2024: Journal of Medicinal Chemistry
https://read.qxmd.com/read/38323660/serum-protein-profiling-reveals-distinct-patient-clusters-in-giant-cell-arteritis
#28
JOURNAL ARTICLE
Flavia Zingg, Fabio S Ryser, Andrea D Gloor, Christos Polysopoulos, Peter M Villiger, Britta Maurer, Lisa Christ
OBJECTIVES: We investigated the potential of serum proteins to distinguish clinical and molecular subtypes in patients with giant cell arteritis (GCA). METHODS: Proximity extension assays were used to analyse 1463 proteins in serum samples from patients with new-onset GCA (n = 16) and after achieving remission (n = 13). Unsupervised and supervised cluster analyses were performed. RESULTS: Unsupervised cluster analysis identified three distinct clusters based on the protein signature...
February 7, 2024: Rheumatology
https://read.qxmd.com/read/38322560/association-between-immune-related-hub-genes-cd36-cxcl13-fgfr4-gabbr1-lamp3-mmp12-and-ppm1h-and-colorectal-cancer-prognosis
#29
JOURNAL ARTICLE
Liuli Wang, Xiaohua Dong, Miao Yu, Xiazi Nie, Mengmeng Du, Xiashuang Zhao, Yipeng Zhang, Hui Cai
The present study aims to identify immune-related prognostic genes in colorectal cancer (CRC), and to explore potential mechanisms through which these genes regulate CRC progression. We first constructed a prognostic risk model based on seven gene signatures [cluster of differentiation-36 ( CD36 ), chemokine (C-X-C-motif) ligand 13 ( CXCL13 ), fibroblast growth factor receptor 4 ( FGFR4 ), gamma-amino-butyric acid type B receptor 1 ( GABBR1 ), lysosome-associated membrane glycoprotein 3 ( LAMP3 ), recombinant matrix metalloproteinase 12 ( MMP12 ), and protein phosphatase 1H ( PPM1H )] using integrated bioinformatic analyses...
2024: American Journal of Translational Research
https://read.qxmd.com/read/38296402/large-scale-proteomics-identifies-novel-biomarkers-and-circulating-risk-factors-for-aortic-stenosis
#30
JOURNAL ARTICLE
Khaled Shelbaya, Victoria Arthur, Yimin Yang, Pranav Dorbala, Leo Buckley, Brian Claggett, Hicham Skali, Line Dufresne, Ta-Yu Yang, James C Engert, George Thanassoulis, James Floyd, Thomas R Austin, Anna Bortnick, Jorge Kizer, Renata C C Freitas, Sasha A Singh, Elena Aikawa, Ron C Hoogeveen, Christie Ballantyne, Bing Yu, Josef Coresh, Michael J Blaha, Kunihiro Matsushita, Amil M Shah
BACKGROUND: Limited data exist regarding risk factors for aortic stenosis (AS). The plasma proteome is a promising phenotype for discovery of novel biomarkers and potentially causative mechanisms. OBJECTIVES: The aim of this study was to discover novel biomarkers with potentially causal associations with AS. METHODS: We measured 4,877 plasma proteins (SomaScan aptamer-affinity assay) among ARIC (Atherosclerosis Risk In Communities) study participants in mid-life (visit 3 [V3]; n = 11,430; age 60 ± 6 years) and in late-life (V5; n = 4,899; age 76 ± 5 years)...
February 6, 2024: Journal of the American College of Cardiology
https://read.qxmd.com/read/38288346/mtor-suppresses-cigarette-smoke-induced-airway-inflammation-and-mmp12-expression-in-macrophage-in-chronic-obstructive-pulmonary-disease
#31
JOURNAL ARTICLE
Lingling Dong, Yong Wang, Haipin Chen, Zhouyang Li, Xuchen Xu, Jiesen Zhou, Huahao Shen, Zhihua Chen
BACKGROUND: Macrophage-derived matrix metalloproteinase 12 (MMP12) can cause destruction of lung tissue structure and plays a significant role in the development and progression of chronic obstructive pulmonary disease (COPD). MTOR is a serine/threonine kinase that plays a crucial role in cell growth and metabolism. The activity of MTOR in the lung tissues of COPD patients also shows significant changes. However, it is unclear whether MTOR can regulate the development and progression of COPD by controlling MMP12...
2024: International Journal of Chronic Obstructive Pulmonary Disease
https://read.qxmd.com/read/38277235/multi-omics-analysis-reveals-immune-features-associated-with-immunotherapy-benefit-in-squamous-cell-lung-cancer-patients-from-phase-iii-lung-map-s1400i-trial
#32
JOURNAL ARTICLE
Edwin Roger Parra, Jiexin Zhang, Dzifa Yawa Duose, Edgar Gonzalez-Kozlova, Mary W Redman, Hong Chen, Ganiraju C Manyam, Gayatri Kumar, Jianhua Zhang, Xingzhi Song, Rossana Lazcano, Mario L Marques-Piubelli, Caddie Laberiano-Fernandez, Frank Rojas, Baili Zhang, Len Taing, Aashna Jhaveri, Jacob Geisberg, Jennifer Altreuter, Franziska Michor, James Provencher, Joyce Yu, Ethan Cerami, Radim Moravec, Kasthuri Kannan, Rajyalakshmi Luthra, Gheath Alatrash, Hsin-Hui Huang, Hui Xie, Manishkumar Patel, Kai Nie, Jocelyn Harris, Kimberly Argueta, James Lindsay, Roshni Biswas, Stephen Van Nostrand, Seunghee Kim-Schulze, Jhanelle E Gray, Roy Herbst, Ignacio I Wistuba, Scott Gettinger, Karen Kelly, Lyudmila Bazhenova, Sacha Gnjatic, J Jack Lee, Jianjun Zhang, Cara Haymaker
BACKGROUND: Identifying molecular and immune features to guide immune checkpoint inhibitor (ICI)-based regimens remains an unmet clinical need. METHODS: Tissue and longitudinal blood specimens from phase III trial S1400I in metastatic lung squamous cell carcinoma (SqNSCLC) patients treated with nivolumab monotherapy (nivo) or nivolumab plus ipilimumab (nivo+ipi) were subjected to multi-omics analyses including multiplex immunofluorescence (mIF), nCounter PanCancer Immune Profiling Panel, whole-exome sequencing, and Olink...
January 26, 2024: Clinical Cancer Research
https://read.qxmd.com/read/38250306/the-role-of-gnmt-and-mmp12-expression-in-determining-tace-efficacy-validation-at-transcription-and-protein-levels
#33
JOURNAL ARTICLE
Tianhao Cong, Chao Yang, Qi Cao, Jinrui Ren, Yingen Luo, Pei Yuan, Bo Zheng, Yu Liu, Hongcai Yang, Wendi Kang, Aixin Ou, Xiao Li
PURPOSE: Transarterial chemoembolization (TACE) represents a significant therapeutic modality for hepatocellular carcinoma (HCC). We aimed to develop a gene signature to accurately predict patient TACE response and explore the underlying mechanisms. METHODS: Three independent datasets were utilized, including GSE104580, GSE14520 and external validation from the Cancer Hospital Chinese Academy of Medical Sciences. GSE104580 was randomly partitioned into a training set and a validation set, whereas GSE14520 was categorized into a resection group and a TACE group...
2024: Journal of Hepatocellular Carcinoma
https://read.qxmd.com/read/38236765/comparative-gene-signature-of-nociceptors-innervating-mouse-molar-teeth-cranial-meninges-and-cornea
#34
JOURNAL ARTICLE
Pamela Sotelo-Hitschfeld, Laura Bernal, Masoud Nazeri, William Renthal, Sebastian Brauchi, Carolina Roza, Katharina Zimmermann
BACKGROUND: The trigeminal ganglion (TG) collects afferent sensory information from various tissues. Recent large-scale RNA sequencing of neurons of the TG and dorsal root ganglion has revealed a variety of functionally distinct neuronal subpopulations, but organ-specific information is lacking. METHODS: To link transcriptomic and tissue-specific information, we labeled small-diameter neurons of 3 specific subpopulations of the TG by local application of lipophilic carbocyanine dyes to their innervation site in the dental pulp, cornea, and meninges (dura mater)...
January 18, 2024: Anesthesia and Analgesia
https://read.qxmd.com/read/38193041/expression-profiles-of-matrix-metalloproteinases-and-their-inhibitors-in-nasal-polyps
#35
JOURNAL ARTICLE
Chen Duan, Xuemin Yu, Xin Feng, Li Shi, Deyun Wang
PURPOSE: Nasal polyp (NP) is characterized by inflammation of the sinonasal mucosa with predominant inflammatory cell infiltration. Matrix metalloproteinases (MMPs) and tissue inhibitor of metalloproteinases (TIMPs) are recognized to play an important role in leukocyte migration in airway inflammation. Herein, efforts were made to confirm the expression levels of MMPs/TIMPs and study the relationship between the infiltration of inflammatory cells and local expression levels of MMPs/TIMPs in NPs...
2024: Journal of Inflammation Research
https://read.qxmd.com/read/38176315/flavonoid-4-4-dimethoxychalcone-selectively-eliminates-senescent-cells-via-activating-ferritinophagy
#36
JOURNAL ARTICLE
Tianxiang Wang, Changmei Yang, Zhiqiang Li, Ting Li, Ran Zhang, Yujiao Zhao, Tianyi Cheng, Zhaoyun Zong, Yingying Ma, Dongyuan Zhang, Haiteng Deng
Flavonoids are bioactive natural polyphenolic compounds with health benefits, including anti-tumor, anti-inflammatory and anti-aging effects. Our previous studies revealed that a flavonoid 4,4'-dimethoxychalcone (DMC) induced ferroptosis via inhibiting ferrochelatase (FECH). However, the effect of DMC on cellular senescence is unknown. In the present study, we found that DMC treatment selectively eliminated senescent cells, and DMC alone or a combination of DMC and quercetin or dasatinib showed high efficiency in the clearance of senescent cells...
December 30, 2023: Redox Biology
https://read.qxmd.com/read/38168372/a-plasma-peptidomic-signature-reveals-extracellular-matrix-remodeling-and-predicts-prognosis-in-alcohol-related-hepatitis
#37
Khaled Sayed, Christine E Dolin, Daniel W Wilkey, Jiang Li, Toshifumi Sato, Juliane I Beier, Josepmaria Argemi, Ramon Bataller, Abdus S Wahed, Michael L Merchant, Panayiotis V Benos, Gavin E Arteel
UNLABELLED: Alcohol-related hepatitis (AH) is plagued with high mortality and difficulty in identifying at-risk patients. The extracellular matrix undergoes significant remodeling during inflammatory liver injury that can be detected in biological fluids and potentially used for mortality prediction. EDTA plasma samples were collected from AH patients (n= 62); Model for End-Stage Liver Disease (MELD) score defined AH severity as moderate (12-20; n=28) and severe (>20; n=34). The peptidome data was collected by high resolution, high mass accuracy UPLC-MS...
December 14, 2023: medRxiv
https://read.qxmd.com/read/38134103/an-aging-related-gene-signature-to-predict-the-prognosis-of-hepatocellular-carcinoma
#38
JOURNAL ARTICLE
Yanfei Fang, Wenjing Yang, Lexi Wu, Lingya Yao, Xianghan Cao, Haotian Chen
Aging increases the susceptibility of various diseases, including hepatocellular carcinoma (HCC). This study aimed to establish an aging-related prognostic model for HCC and to investigate the role of aging-related genes in HCC progression. Transcriptome and clinical information of HCC cases were obtained from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. Aging-related prognostic genes were identified through univariate Cox regression analysis, protein-protein interaction analysis, and least absolute shrinkage and selection operator (LASSO) analysis...
December 22, 2023: Medicine (Baltimore)
https://read.qxmd.com/read/38115636/exploration-of-the-biomarkers-of-comorbidity-of-psoriasis-with-inflammatory-bowel-disease-and-their-association-with-immune-infiltration
#39
JOURNAL ARTICLE
Rui-Lian Ding, Yu Zheng, Jin Bu
BACKGROUND: There was evidence that significant bidirectional associations between psoriasis and inflammatory bowel diseases (IBDs), which influences management strategy of the patients, so the investigation on the mechanisms by which these two diseases co-occur is important. METHODS: The Gene Expression Omnibus (GEO) database was used to download gene expression profiles of psoriasis and IBD. The differentially expressed genes (DEGs) between disease and health control groups for each data set were calculated, and Venn diagram was used to obtain for intersection...
December 2023: Skin Research and Technology
https://read.qxmd.com/read/38074471/up-regulated-spp1-increases-the-risk-from-ipf-to-lung-cancer-via-activating-the-pro-tumor-macrophages
#40
JOURNAL ARTICLE
Tingting Chen, Jiayu Guo, Liqiang Ai, Yuquan Wang, Yan Wang, Bo Chen, Mingyue Liu, Shuping Zhuang, Kaidong Liu, Zhangxiang Zhao, Haihai Liang, Yunyan Gu
The incidence of lung cancer (LC) in Idiopathic Pulmonary Fibrosis (IPF) patients is more than twice that in non-IPF. This study aims to investigate IPF-to-LC pathogenesis and to develop a predictor for detecting IPF predisposing patients to LC. We conducted unsupervised clustering to detect high-risk subtypes from IPF to LC. Subsequently, we performed single-cell RNA-seq analysis to characterize high-risk IPF by examining the immune microenvironment. We identified 42 common immune function-related pathogenic genes between IPF and LC...
2023: Computational and Structural Biotechnology Journal
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