keyword
https://read.qxmd.com/read/38656412/creating-a-zero-amylose-barley-with-high-soluble-sugar-content-by-genome-editing
#41
JOURNAL ARTICLE
Yun Li, Yanyan Jiang, Dong Cao, Bin Dang, Xijuan Yang, Shiting Fan, Yuhu Shen, Genying Li, Baolong Liu
Amylose biosynthesis is strictly associated with granule-bound starch synthase I (GBSSI) encoded by the Waxy gene. Mutagenesis of single bases in the Waxy gene, which induced by CRISPR/Cas9 genome editing, caused absence of intact GBSSI protein in grain of the edited line. The amylose and amylopectin contents of waxy mutants were zero and 31.73%, while those in the wild type were 33.50% and 39.00%, respectively. The absence of GBSSI protein led to increase in soluble sugar content to 37.30% compared with only 10...
April 24, 2024: Plant Molecular Biology
https://read.qxmd.com/read/38653764/structural-and-biochemical-analysis-of-family-92-carbohydrate-binding-modules-uncovers-multivalent-binding-to-%C3%AE-glucans
#42
JOURNAL ARTICLE
Meng-Shu Hao, Scott Mazurkewich, He Li, Alma Kvammen, Srijani Saha, Salla Koskela, Annie R Inman, Masahiro Nakajima, Nobukiyo Tanaka, Hiroyuki Nakai, Gisela Brändén, Vincent Bulone, Johan Larsbrink, Lauren S McKee
Carbohydrate-binding modules (CBMs) are non-catalytic proteins found appended to carbohydrate-active enzymes. Soil and marine bacteria secrete such enzymes to scavenge nutrition, and they often use CBMs to improve reaction rates and retention of released sugars. Here we present a structural and functional analysis of the recently established CBM family 92. All proteins analysed bind preferentially to β-1,6-glucans. This contrasts with the diversity of predicted substrates among the enzymes attached to CBM92 domains...
April 23, 2024: Nature Communications
https://read.qxmd.com/read/38649988/neem-leaf-glycoprotein-binding-to-dectin-1-receptors-on-dendritic-cell-induces-type-1-immunity-through-card9-mediated-intracellular-signal-to-nf%C3%AE%C2%BAb
#43
JOURNAL ARTICLE
Nilanjan Ganguly, Tapasi Das, Avishek Bhuniya, Ipsita Guha, Mohona Chakravarti, Sukanya Dhar, Anirban Sarkar, Saurav Bera, Jesmita Dhar, Shayani Dasgupta, Akata Saha, Tithi Ghosh, Juhina Das, Ugir Hossain Sk, Saptak Banerjee, Subrata Laskar, Anamika Bose, Rathindranath Baral
BACKGROUND: A water-soluble ingredient of mature leaves of the tropical mahogany 'Neem' (Azadirachta indica), was identified as glycoprotein, thus being named as 'Neem Leaf Glycoprotein' (NLGP). This non-toxic leaf-component regressed cancerous murine tumors (melanoma, carcinoma, sarcoma) recurrently in different experimental circumstances by boosting prime antitumor immune attributes. Such antitumor immunomodulation, aid cytotoxic T cell (Tc )-based annihilation of tumor cells. This study focused on identifying and characterizing the signaling gateway that initiate this systemic immunomodulation...
April 23, 2024: Cell Communication and Signaling: CCS
https://read.qxmd.com/read/38649076/caffeic-acid-combined-with-arabinoxylan-or-%C3%AE-glucan-attenuates-diet-induced-obesity-in-mice-via-modulation-of-gut-microbiota-and-metabolites
#44
JOURNAL ARTICLE
Wei Fang, Mingyu Jin, Wentao Qi, Chunli Kong, Ge Song, Wenting Peng, Yong Wang
Polyphenols and dietary fibers in whole grains are important bioactive compounds to reduce risks for obesity. However, whether the combination of the two components exhibits a stronger anti-obesity effect remains unclear. Caffeic acid is a major phenolic acid in cereals, and arabinoxylan and β-glucan are biological macromolecules with numerous health benefits. Here, we investigated the effect of caffeic acid combined with arabinoxylan or β-glucan on glucose and lipid metabolism, gut microbiota, and metabolites in mice fed a high-fat diet (HFD)...
April 20, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38647976/enhanced-enzymatic-sugar-production-from-corn-stover-by-combination-of-water-extraction-and-glycerol-assisted-instant-catapult-steam-explosion
#45
JOURNAL ARTICLE
Fengqin Wang, Hongli Dong, Weiwei Yu, Yinling Gao, Guotao Mao, Yanxia An, Hui Xie, Andong Song, Zhanying Zhang
Glycerol-assisted instant catapult steam explosion (ICSE) of lignocellulose is an effective pretreatment method for enhancing sugar production compared to glycerol-free ICSE. In this study, glycerol-assisted ICSE of corn stover was studied in order to understand the reaction mechanisms and further optimize the process. Results showed that water extraction of corn stover prior to ICSE reduced pseudo-lignin formation. The combination of water extraction and glycerol-assisted ICSE led to the formation of lignin with a lower molecular weight (Mw) of 2851 g/mol than 3521 g/mole of that from the combination of water extraction and glycerol-free ICSE...
March 14, 2024: Bioresources and Bioprocessing
https://read.qxmd.com/read/38647869/nutritional-and-antioxidant-potential-of-pleurotus-djamor-rumph-ex-fr-boedijn-produced-on-agronomic-wastes-banana-leaves-and-sugarcane-bagasse-substrates
#46
JOURNAL ARTICLE
Rossana Lucena de Medeiros, Giuliane Moura Andrade, Renata Barros Crispim, Niellyson Nardan Dos Santos Silva, Sabrina Alves da Silva, Háimyk Andressa Nóbrega de Souza, Jhonatan Rafael Zárate-Salazar, Francinalva Dantas de Medeiros, Carlos Eduardo Alves Dantas, Vanessa Bordin Viera, Anauara Lima E Silva, Josean Fechine Tavares, Fillipe de Oliveira Pereira
Global food production faces challenges concerning access to nutritious and sustainably produced food. Pleurotus djamor, however, is an edible mushroom that can be cultivated on agricultural waste. Considering that nutritional and functional potential of mushrooms can change based on cultivation conditions, we examined the influence of substrates with different compositions of banana leaf and sugarcane bagasse on the nutritional, mycochemical, and antioxidant properties of P. djamor. The mushrooms were grown for 120 days and dried in a circulating air oven at 45 °C for three days...
April 22, 2024: Brazilian Journal of Microbiology: [publication of the Brazilian Society for Microbiology]
https://read.qxmd.com/read/38643913/effect-of-different-molecular-weight-%C3%AE-glucan-hydrated-with-highland-barley-protein-on-the-quality-and-in-vitro-starch-digestibility-of-whole-wheat-bread
#47
JOURNAL ARTICLE
Mengfei Gao, Zhongbo Hu, Yueyue Yang, Zhengyu Jin, Aiquan Jiao
Whole wheat bread has high nutritional value, but it has inferior baking quality and high glycemic index, which needs to be improved by methods such as adding protein and β-glucan. This study investigated the effects of β-glucan and highland barley protein of different molecular weights (2 × 104 , 1 × 105 , and 3 × 105  Da) and different hydrate methods (pre-hydrate and not pre-hydrate) on the characteristics of whole wheat dough and bread...
April 19, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38641972/structural-basis-for-the-recognition-of-%C3%AE-1-6-branched-%C3%AE-glucan-by-gh13_47-%C3%AE-amylase-from-rhodothermus-marinus
#48
JOURNAL ARTICLE
Yuki Miyasaka, Kohei Yokoyama, Takuma Kozono, Yoshikazu Kitano, Takatsugu Miyazaki, Masayoshi Sakaguchi, Atsushi Nishikawa, Takashi Tonozuka
Glycoside hydrolase (GH) family 13 is among the main families of enzymes acting on starch; recently, subfamily 47 of GH13 (GH13_47) has been established. The crystal structure and function of a GH13_47 enzyme from Bacteroides ovatus has only been reported to date. This enzyme has α-amylase activity, while the GH13_47 enzymes comprise approximately 800-900 amino acid residues which are almost double those of typical α-amylases. It is important to know how different the GH13_47 enzymes are from other α-amylases...
April 20, 2024: Proteins
https://read.qxmd.com/read/38641282/trehalose-synthases-from-the-subfamily-gh13_16-involved-in-%C3%AE-glucan-biosynthesis-a-focus-on-their-maltokinase-domain
#49
JOURNAL ARTICLE
Ľubica Urbániková, Štefan Janeček
The subfamily GH13_16 trehalose synthase (TreS) converts maltose to trehalose and vice versa. Typically, it consists of three domains, but it may contain a C-terminal extension exhibiting clear sequence features of a maltokinase (MaK). The present in silico study was focused on collection of naturally fused TreS-MaKs and their subsequent detailed bioinformatics analysis. Hence a set of total 3354 unique sequences was compared consisting of 1900 single TreSs, 1426 fused TreS-MaKs and 28 single MaKs. Fused TreS-MaKs were divided into five groups, namely with a standard MaK, with mutations in the maltose-binding site, of the catalytic nucleophile, of the general acid/base and of both catalytic residues...
April 17, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38640440/decomposition-of-fomes-fomentatius-fruiting-bodies-transition-of-healthy-living-fungus-into-a-decayed-bacteria-rich-habitat-is-primarily-driven-by-arthropoda
#50
JOURNAL ARTICLE
Jason Bosch, Priscila Thiago Dobbler, Tomáš Větrovský, Vojtěch Tláskal, Petr Baldrian, Vendula Brabcová
Fomes fomentarius is a widespread, wood-rotting fungus of temperate, broadleaved forests. Although the fruiting bodies of F. fomentarius persist for multiple years, little is known about its associated microbiome or how these recalcitrant structures are ultimately decomposed. Here we used metagenomics and metatranscriptomics to analyse the microbial community associated with healthy living and decomposing F. fomentarius fruiting bodies to assess the functional potential of the fruiting body-associated microbiome and to determine the main players involved in fruiting body decomposition...
April 10, 2024: FEMS Microbiology Ecology
https://read.qxmd.com/read/38636842/is-there-an-interest-in-systematic-serum-screening-for-aspergillosis-in-covid-19-patients-in-a-medical-ward
#51
JOURNAL ARTICLE
Victor Gerber, Louis Boehn, Marcela Sabou, Antoine Studer, Axel Ursenbach, Yves Hansmann, Raoul Herbrecht, Nicolas Lefebvre, Valérie Letscher-Bru, François Danion
PURPOSE: We evaluated the interest of systematic screening of serum fungal markers in patients hospitalized in a medical ward. METHODS: We retrospectively analyzed all patients hospitalized in our infectious disease department from October 1st to October 31st, 2020 for COVID-19 without prior ICU admission, and for whom systematic screening of serum fungal markers was performed. RESULTS: Thirty patients were included. The majority of patients received corticosteroids (96...
April 16, 2024: Infectious diseases now
https://read.qxmd.com/read/38636760/mannans-structural-carbohydrates-produced-during-seed-maturation-in-euterpe-edulis-martius-an-atlantic-forest-species-vulnerable-to-extinction
#52
JOURNAL ARTICLE
Tamyris de Mello, Mariana Neves Catrinck, Daniel Fernandes Cipriano, Heliane Rosa Amaral, Clovis Eduardo Nunes Hegedus, Edilson Romais Schmildt, Adésio Ferreira, Heloisa Oliveira Dos Santos, José Carlos Lopes, Caio Gomide Otoni, Wagner Campos Otoni, Jair Carlos Checon de Freitas, Rodrigo Sobreira Alexandre
Palm seedlings are visually selected from mature fruits in a slow process that leads to nonuniform germination and high embryo mortality. In this study, we determined the levels of monosaccharides, their crystallinity, and their role in the formation of Euterpe edulis endosperm during seed maturation. Seeds harvested from 108 to 262 days after anthesis (DAA) were analyzed morphologically, physiologically, and chemically to measure soluble and insoluble lignins, ashes, structural carbohydrates, degree of crystallinity, and endo-β-mannanase...
April 16, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38634015/histoplasma-capsulatum-as-a-cause-for-prolonged-pulmonary-illness-in-an-immunocompetent-returning-traveller-from-bangladesh
#53
Muhammad Rizwan Zafar, Thomas Whitfield, Sabeen Khurshid Zaidi, Sanjeewani Weerakoon, Joel Paul, Riina Rautemaa-Richardson
Fungal infections can be challenging to diagnose in returning travellers due to their non-specific clinical manifestations and changing epidemiology. We present a case of progressive disseminated histoplasmosis in a returning traveller from Bangladesh. The patient had a progressive and prolonged respiratory illness necessitating mechanical ventilatory support. The clue to potential fungal aetiology was provided by serum fungal markers - 1-3-β-D-glucan and Aspergillus galactomannan. Diagnosis was eventually made using panfungal PCR on bronchioalveolar lavage fluid...
June 2024: Medical Mycology Case Reports
https://read.qxmd.com/read/38631559/molecular-characterization-expression-and-antibacterial-function-of-a-macin-hdmac-from-haliotis-discus-hannai
#54
JOURNAL ARTICLE
Chunli Jiao, Jian Ruan, Wei Sun, Xinze Zhang, Xiaobo Liu, Guodong Sun, Caili Liu, Chunxiao Sun, Xiuhui Tian, Dinglong Yang, Lizhu Chen, Zhongquan Wang
Macins are a family of antimicrobial peptides, which play multiple roles in the elimination of invading pathogens. In the present study, a macin was cloned and characterized from Pacific abalone Haliotis discus hannai (Designated as HdMac). Analysis of the conserved domain suggested that HdMac was a new member of the macin family. In non-stimulated abalones, HdMac transcripts were constitutively expressed in all five tested tissues, especially in hemocytes. After Vibrio harveyi stimulation, the expression of HdMac mRNA in hemocytes was significantly up-regulated at 12 hr (P < 0...
April 15, 2024: Journal of Invertebrate Pathology
https://read.qxmd.com/read/38628769/%C3%AE-glucan-fragmentation-by-microfluidization-and-tnf-%C3%AE-immunostimulating-activity-of-fragmented-%C3%AE-glucans
#55
JOURNAL ARTICLE
Phawinee Nanta, Paiwan Buachan, Wichchunee Pinket, Wanwisa Srinuanchai, Pawinee Pongwan, Issara Sramala, Suwatchai Jarussophon, Wai Prathumpai, Malai Taweechotipatr, Uracha Rungsardthong Ruktanonchai, Kittiwut Kasemwong
Fragmentation of β-glucans secreted by the fungus Ophiocordyceps dipterigena BCC 2073 achieved by microfluidization was investigated. The degree of β-glucan fragmentation was evaluated based on the average number of chain scissions (α). The effects on the α value of experimental variables like solid concentration of the β-glucan suspension, interaction chamber pressure, and number of passes through the microfluidizer were examined. Kinetic studies were conducted using the relationships of the α and suspension viscosity values with the number of passes...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38628239/study-on-mngs-technique-in-diagnosing-pneumocystis-jirovecii-pneumonia-in-non-hiv-infected-patients
#56
JOURNAL ARTICLE
Shuai Li, Xue Han, Jing Ma, Guo-Hong Huang, Shu-Ting Yang, Chang-Min Wang
OBJECTIVE: To investigate the value of metagenomic Next-Generation Sequencing (mNGS) in diagnosing Pneumocystis jirovecii pneumonia (PJP) in non-human immunodeficiency virus (HIV)-infected patients. METHODS: In this retrospective study, non-HIV-infected patients with PJP and those diagnosed with non-PJP from August 2022 to December 2024 were selected as subjects. The presence of Pneumocystis jirovecii (PJ) and other co-pathogens in bronchoalveolar lavage fluid (BALF) was analyzed, and the diagnostic efficacy of NGS, polymerase chain reaction (PCR) and serum 1,3-β-D-glucan (BDG) in PJP was compared with the reference standard of clinical compound diagnosis...
2024: Infection and Drug Resistance
https://read.qxmd.com/read/38625727/xylooligosaccharides-from-lignocellulosic-biomass-and-their-applications-as-nutraceuticals-a-review-on-their-production-purification-and-characterization
#57
REVIEW
Ravindra Kumar, Geir Næss, Mette Sørensen
Xylooligosaccharides (XOS) are considered a potent source of prebiotics for humans. The global prebiotic market is expanding in size, was valued at USD 6.05 billion in 2021, and is expected to grow at a 14.9% compound annual growth rate (CAGR) between 2022 and 2030, indicating a huge demand. These XOS are non-digestible pentose sugar oligomers comprising mainly xylose. Xylose is naturally present in the lignocellulosic biomass (LCB), fruits, and vegetables. Apart from the prebiotic effect, these XOS have been reported to reduce blood cholesterol, antioxidant effect, increase calcium absorption, reduction of colon cancer risk, and benefit diabetic patients...
April 16, 2024: Journal of the Science of Food and Agriculture
https://read.qxmd.com/read/38623421/effect-of-modification-methods-on-the-physical-properties-and-immunomodulatory-activity-of-particulate-%C3%AE-glucan
#58
JOURNAL ARTICLE
Ha-Nul Lee, Hyeon-Jeong Lim, Ji-Yeon Park, Joo-Hee Choi, Seong-Jin Hong, Da Eun Jang, Tae-Su Kim, Su Hui Seong, Bo-Ram Kim, Jin-Ho Kim, Chan Seo, Jong-Hwan Park, Jin-Woo Jeong, Young-Min Kim
β-Glucan is an immunoenhancing agent whose biological activities are linked to molecular structure. On that basis, the polysaccharide can be physiochemically modified to produce valuable functional materials. This study investigated the physical properties and immunostimulatory activity of modified β-glucan. Alkali-treated β-glucan had a distinct shape and smaller particle size than untreated β-glucan. The reduced particle size was conducive to the stability of the suspension because the β-glucan appeared to be completely dissolved by this treatment, forming an amorphous mass...
June 2024: Food Science and Biotechnology
https://read.qxmd.com/read/38622625/unlocking-the-genome-of-the-non-sourdough-kazachstania-humilis-maw1-insights-into-inhibitory-factors-and-phenotypic-properties
#59
JOURNAL ARTICLE
Damian Mielecki, Anna Detman, Tamara Aleksandrzak-Piekarczyk, Małgorzata Widomska, Aleksandra Chojnacka, Anna Stachurska-Skrodzka, Paulina Walczak, Elżbieta Grzesiuk, Anna Sikora
BACKGROUND: Ascomycetous budding yeasts are ubiquitous environmental microorganisms important in food production and medicine. Due to recent intensive genomic research, the taxonomy of yeast is becoming more organized based on the identification of monophyletic taxa. This includes genera important to humans, such as Kazachstania. Until now, Kazachstania humilis (previously Candida humilis) was regarded as a sourdough-specific yeast. In addition, any antibacterial activity has not been associated with this species...
April 15, 2024: Microbial Cell Factories
https://read.qxmd.com/read/38621582/microevolution-of-candida-glabrata-nakaseomyces-glabrata-during-an-infection
#60
JOURNAL ARTICLE
Ana L López-Marmolejo, Marco J Hernández-Chávez, Guadalupe Gutiérrez-Escobedo, M Selene Herrera-Basurto, Héctor M Mora-Montes, Alejandro De Las Peñas, Irene Castaño
Candida glabrata (Nakaseomyces glabrata) is an emergent and opportunistic fungal pathogen that colonizes and persists in different niches within its human host. In this work, we studied five clinical isolates from one patient (P7), that have a clonal origin, and all of which come from blood cultures except one, P7-3, obtained from a urine culture. We found phenotypic variation such as sensitivity to high temperature, oxidative stress, susceptibility to two classes of antifungal agents, and cell wall porosity...
April 14, 2024: Fungal Genetics and Biology: FG&B
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