keyword
https://read.qxmd.com/read/38394294/qtl-analysis-of-femaleness-in-monoecious-spinach-and-fine-mapping-of-a-major-qtl-using-an-updated-version-of-chromosome-scale-pseudomolecules
#21
JOURNAL ARTICLE
Kaoru Yamano, Akane Haseda, Keisuke Iwabuchi, Takayuki Osabe, Yuki Sudo, Babil Pachakkil, Keisuke Tanaka, Yutaka Suzuki, Atsushi Toyoda, Hideki Hirakawa, Yasuyuki Onodera
Although spinach is predominantly dioecious, monoecious plants with varying proportions of female and male flowers are also present. Recently, monoecious inbred lines with highly female and male conditions have been preferentially used as parents for F1-hybrids, rather than dioecious lines. Accordingly, identifying the loci for monoecism is an important issue for spinach breeding. We here used long-read sequencing and Hi-C technology to construct SOL_r2.0_pseudomolecule, a set of six pseudomolecules of spinach chromosomes (total length: 879...
2024: PloS One
https://read.qxmd.com/read/38390293/modulating-root-system-architecture-cross-talk-between-auxin-and-phytohormones
#22
REVIEW
Mehmood Jan, Sajid Muhammad, Weicai Jin, Wenhao Zhong, Shaolong Zhang, Yanjie Lin, Yueni Zhou, Jinlong Liu, Haifeng Liu, Raheel Munir, Qiang Yue, Muhammad Afzal, Guoping Wang
Root architecture is an important agronomic trait that plays an essential role in water uptake, soil compactions, nutrient recycling, plant-microbe interactions, and hormone-mediated signaling pathways. Recently, significant advancements have been made in understanding how the complex interactions of phytohormones regulate the dynamic organization of root architecture in crops. Moreover, phytohormones, particularly auxin, act as internal regulators of root development in soil, starting from the early organogenesis to the formation of root hair (RH) through diverse signaling mechanisms...
2024: Frontiers in Plant Science
https://read.qxmd.com/read/38363863/phosphorylation-of-the-alpha-i-motif-in-symrk-drives-root-nodule-organogenesis
#23
JOURNAL ARTICLE
Nikolaj B Abel, Malita M M Nørgaard, Simon B Hansen, Kira Gysel, Ignacio Arribas Díez, Ole N Jensen, Jens Stougaard, Kasper R Andersen
Symbiosis receptor-like kinase SYMRK is required for root nodule symbiosis between legume plants and nitrogen-fixing bacteria. To understand symbiotic signaling from SYMRK, we determined the crystal structure to 1.95 Å and mapped the phosphorylation sites onto the intracellular domain. We identified four serine residues in a conserved "alpha-I" motif, located on the border between the kinase core domain and the flexible C-terminal tail, that, when phosphorylated, drives organogenesis. Substituting the four serines with alanines abolished symbiotic signaling, while substituting them with phosphorylation-mimicking aspartates induced the formation of spontaneous nodules in the absence of bacteria...
February 20, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38361340/the-peptide-golven10-alters-root-development-and-noduletaxis-in-medicago-truncatula
#24
JOURNAL ARTICLE
Sonali Roy, Ivone Torres-Jerez, Shulan Zhang, Wei Liu, Katharina Schiessl, Divya Jain, Clarissa Boschiero, Hee-Kyung Lee, Nicholas Krom, Patrick X Zhao, Jeremy D Murray, Giles E D Oldroyd, Wolf-Rüdiger Scheible, Michael Udvardi
The conservation of GOLVEN (GLV)/ROOT MERISTEM GROWTH FACTOR (RGF) peptide encoding genes across plant genomes capable of forming roots or root-like structures underscores their potential significance in the terrestrial adaptation of plants. This study investigates the function and role of GOLVEN peptide-coding genes in Medicago truncatula. Five out of fifteen GLV/RGF genes were notably upregulated during nodule organogenesis and were differentially responsive to nitrogen deficiency and auxin treatment. Specifically, the expression of MtGLV9 and MtGLV10 at nodule initiation sites was contingent upon the NODULE INCEPTION transcription factor...
February 15, 2024: Plant Journal
https://read.qxmd.com/read/38347291/in-silico-identification-and-characterization-of-rare-cold-inducible-2-rci2-gene-family-in-cotton
#25
JOURNAL ARTICLE
Muhammad Fahad, Leeza Tariq, Muhammad Tanveer Altaf, Muhammad Shahnawaz, Mudassir Aslam, Waqas Liaqat, Inayat Ullah, Izhar Ullah, Heba I Mohamed, Abdul Basit
RCI2/PMP3s are involved in biotic and abiotic stresses and have an influence on the regulation of many genes. RCI2/PMP3 genes, which particularly encode small membrane proteins of the PMP3 family, are involved in abiotic stress responses in plants. In this work, in silico studies were used to investigate RCI2's potential function in stress tolerance and organogenesis. We conducted an extensive study of the RCI2 gene family and revealed 36 RCI2 genes from cotton species that were distributed over 36 chromosomes of the cotton genome...
February 12, 2024: Biochemical Genetics
https://read.qxmd.com/read/38342489/a-framework-for-date-palm-phoenix-dactylifera-l-tissue-regeneration-and-stable-transformation
#26
JOURNAL ARTICLE
Yasha Zhang, Himanshu Patankar, Fatima Aljedaani, Ikram Blilou
The date palm is a resilient, socioeconomically valuable desert fruit tree renowned for its heat, drought, and salinity tolerance. Date palm fruits are rich in nutrients and antioxidants, and their beneficial health properties can mitigate current and future food security challenges. However, it is challenging to improve date palm production through conventional breeding methods due to its slow growth. Date palm seeds do not produce true-to-type progeny, and commercial propagation relies on direct organogenesis from maternal tissue...
2024: Physiologia Plantarum
https://read.qxmd.com/read/38330218/transcription-factor-wox11-modulates-tolerance-to-cyst-nematodes-via-adventitious-lateral-root-formation
#27
JOURNAL ARTICLE
Jaap-Jan Willig, Nina Guarneri, Thomas van Loon, Sri Wahyuni, Ivan E Astudillo-Estévez, Lin Xu, Viola Willemsen, Aska Goverse, Mark G Sterken, José L Lozano-Torres, Jaap Bakker, Geert Smant
The transcription factor WUSCHEL-RELATED HOMEOBOX 11 (WOX11) in Arabidopsis (Arabidopsis thaliana) initiates the formation of adventitious lateral roots upon mechanical injury in primary roots. Root-invading nematodes also induce de novo root organogenesis leading to excessive root branching, but it is not known if this symptom of disease involves mediation by WOX11 and if it benefits the plant. Here, we show with targeted transcriptional repression and reporter gene analyses in Arabidopsis that the beet cyst nematode Heterodera schachtii activates WOX11-mediated adventitious lateral rooting from primary roots close to infection sites...
February 8, 2024: Plant Physiology
https://read.qxmd.com/read/38311772/in-vitro-propagation-of-indonesian-stevia-stevia-rebaudiana-genotype-using-axenic-nodal-segments
#28
JOURNAL ARTICLE
Nurul Jadid, Suci Anggraeni, Muhammad Rifqi Nur Ramadani, Mutiara Arieny, Faisol Mas'ud
OBJECTIVE: The high industrial demand for Stevia cultivation (Stevia rebaudiana) has increased due to its high stevioside content derived from the leaves. However, the low germination rate makes the cultivation of the plant become the main obstacle. Therefore, an efficient cultivation technique is required. This present work aims to analyze the effect of five combinations of Kinetin (Kin) and benzyladenine (BA) on stevia micropropagation using nodal segment explants. RESULTS: The micropropagation of stevia was performed using Murashige and Skoog (MS) medium supplemented with BA and Kin...
February 5, 2024: BMC Research Notes
https://read.qxmd.com/read/38285153/temporary-immersion-system-for-biomass-production-of-salvia-spp-a-mini-review
#29
JOURNAL ARTICLE
Yudith García-Ramírez
Salvia is a very valuable medicinal plant for the pharmaceutical industry. Tissue culture techniques can be used to increase the number of plants in a shorter time. Although protocols for in vitro propagation of more than 15 plant species have been developed, they are not yet efficient enough to increase mass propagation of plants. Therefore, the use of temporary immersion systems is necessary to increase the morphological quality of plants as well as their biomass in several Salvia species. In this chapter, progress in in vitro propagation in several Salvia species using liquid medium and automation is described...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38285151/multiplication-of-cupressus-guadalupensis-using-the-rita-%C3%A2-temporary-immersion-system
#30
JOURNAL ARTICLE
Luis Alberto Gómez-Reyes, Esmeralda Judith Cruz-Gutiérrez, Lorena Jacqueline Gómez-Godínez, Manuel de Jesús Bermúdez-Guzmán, Claudia Berenice Espitia-Flores, Juan Manuel Pichardo González
The Guadalupe cypress (Cupressus guadalupensis S. Watson) is an endangered species included in the list of the NOM-059-SEMARNAT-2010. The presence of wild goats in the habitat has been the greatest threat to the propagation and survival of this species. Therefore, there is a need to generate propagation protocols that facilitate the regeneration of the species. Plant tissue culture offers various possibilities that can facilitate the regeneration of species under some risk. Temporary immersion systems have proven to be an option with various advantages in plant tissue culture, such as increasing the number of seedlings generated and reducing production times, compared to semisolid media...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38285150/in-vitro-propagation-of-plants-via-organogenesis-in-bambusa-vulgaris-schrad-ex-wendl-using-temporary-immersion-systems
#31
JOURNAL ARTICLE
Yudith García-Ramírez, Mallelyn González-González, Marisol Freire-Seijo, Raúl Barbón-Rodríguez, Sinesio Torres-García
The low multiplication and ex vitro survival rates during acclimatization in the culture house limit the in vitro mass propagation of B. vulgaris. Several scientific studies have described the development of different protocols for bamboo; however, not all of them address the effects of these systems on plant morphology, physiology, and biochemistry in vitro. In this chapter, a complete and optimized protocol is described for plants propagated via organogenesis in temporary immersion systems. In addition, the morphophysiological and biochemical characterization of the plants as well as the survival rates of the obtained plants under ex vitro conditions are analyzed...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38285144/direct-shoot-from-root-and-true-to-type-micropropagation-of-limonium-misty-blue-in-partially-immersed-culture-on-an-aluminum-mesh-raft
#32
JOURNAL ARTICLE
Priyanka Raha, Gourab Saha, Ishita Khatua, Tapas Kumar Bandyopadhyay
Commercial plant tissue culture now primarily serves the ornamental horticulture industry. The main pillars of the commercial tissue culture business are scalability of production, cost reduction, limited labor involvement, high quality, and genetic homogeneity of propagated plants. Based on these requirements, the current protocol employs a partially immersed liquid culture medium supported by a flexible aluminum mesh raft with a wire stand to facilitate shoot organogenesis from the horizontally placed root explants and hold the plants upright for shoot multiplication and rooting of Limonium Misty Blue...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38281016/a-transcriptomic-examination-of-encased-rotifer-embryos-reveals-the-developmental-trajectory-leading-to-long-term-dormancy-are-they-animal-seeds
#33
JOURNAL ARTICLE
Tamar Hashimshony, Liron Levin, Andreas C Fröbius, Nitsan Dahan, Vered Chalifa-Caspi, Reini Hamo, Oshri Gabai-Almog, Idit Blais, Yehuda G Assaraf, Esther Lubzens
BACKGROUND: Organisms from many distinct evolutionary lineages acquired the capacity to enter a dormant state in response to environmental conditions incompatible with maintaining normal life activities. Most studied organisms exhibit seasonal or annual episodes of dormancy, but numerous less studied organisms enter long-term dormancy, lasting decades or even centuries. Intriguingly, many planktonic animals produce encased embryos known as resting eggs or cysts that, like plant seeds, may remain dormant for decades...
January 27, 2024: BMC Genomics
https://read.qxmd.com/read/38267759/slow-release-of-a-synthetic-auxin-induces-formation-of-adventitious-roots-in-recalcitrant-woody-plants
#34
JOURNAL ARTICLE
Ohad Roth, Sela Yechezkel, Ori Serero, Avi Eliyahu, Inna Vints, Pan Tzeela, Alberto Carignano, Dorina P Janacek, Verena Peters, Amit Kessel, Vikas Dwivedi, Mira Carmeli-Weissberg, Felix Shaya, Adi Faigenboim-Doron, Kien Lam Ung, Bjørn Panyella Pedersen, Joseph Riov, Eric Klavins, Corinna Dawid, Ulrich Z Hammes, Nir Ben-Tal, Richard Napier, Einat Sadot, Roy Weinstain
Clonal propagation of plants by induction of adventitious roots (ARs) from stem cuttings is a requisite step in breeding programs. A major barrier exists for propagating valuable plants that naturally have low capacity to form ARs. Due to the central role of auxin in organogenesis, indole-3-butyric acid is often used as part of commercial rooting mixtures, yet many recalcitrant plants do not form ARs in response to this treatment. Here we describe the synthesis and screening of a focused library of synthetic auxin conjugates in Eucalyptus grandis cuttings and identify 4-chlorophenoxyacetic acid-L-tryptophan-OMe as a competent enhancer of adventitious rooting in a number of recalcitrant woody plants, including apple and argan...
January 24, 2024: Nature Biotechnology
https://read.qxmd.com/read/38266002/machine-learning-mediated-passiflora-caerulea-callogenesis-optimization
#35
JOURNAL ARTICLE
Marziyeh Jafari, Mohammad Hosein Daneshvar
Callogenesis is one of the most powerful biotechnological approaches for in vitro secondary metabolite production and indirect organogenesis in Passiflora caerulea. Comprehensive knowledge of callogenesis and optimized protocol can be obtained by the application of a combination of machine learning (ML) and optimization algorithms. In the present investigation, the callogenesis responses (i.e., callogenesis rate and callus fresh weight) of P. caerulea were predicted based on different types and concentrations of plant growth regulators (PGRs) (i...
2024: PloS One
https://read.qxmd.com/read/38244048/agrobacterium-mediated-transfer-of-the-fusarium-graminearum-tri6-gene-into-barley-using-mature-seed-derived-shoot-tips-as-explants
#36
JOURNAL ARTICLE
Dongying Gao, Sidrat Abdullah, Thomas Baldwin, Ann Caspersen, Edward Williams, Alvar Carlson, Mike Petersen, Gongshe Hu, Kathy Esvelt Klos, Phil Bregitzer
We transferred the Tri6 gene into the elite barley GemCraft via new transformation method through shoot organogenesis and identified the rearrangements of transgenes and phenotypic variations in the transgenic plants. Despite its agronomic and economic importance, barley transformation is still very challenging for many elite varieties. In this study, we used direct shoot organogenesis to transform the elite barley cultivar GemCraft with the RNAi constructs containing Tri6 gene of Fusarium graminearum, which causes fusarium head blight (FHB)...
January 20, 2024: Plant Cell Reports
https://read.qxmd.com/read/38217865/transcription-factor-lbd16-targets-cell-wall-modification-ion-transport-genes-in-peach-lateral-root-formation
#37
JOURNAL ARTICLE
Xuelian Wu, Zhe Wang, Anqi Du, Huaifeng Gao, Jiahui Liang, Wenying Yu, Haixiang Yu, Shihao Fan, Qiuju Chen, Jian Guo, Yuansong Xiao, Futian Peng
LATERAL ORGAN BOUNDARIES DOMAIN/ASYMMETRIC LEAVES2-LIKEs (LBDs/ASLs) are plant-specific transcription factors that function downstream of auxin-regulated lateral root (LR) formation. Our previous research found that PpLBD16 positively regulates peach (Prunus persica) LR formation. However, the downstream regulatory network and target genes of PpLBD16 are still largely unknown. Here, we constructed a PpLBD16 homologous overexpression line and a PpLBD16 silenced line. We found that overexpressing PpLBD16 promoted peach root initiation, while silencing PpLBD16 inhibited peach root formation...
January 13, 2024: Plant Physiology
https://read.qxmd.com/read/38211416/the-plant-growth-promoting-rhizobacterium-achromobacter-sp-5b1-rescues-arabidopsis-seedlings-from-alkaline-stress-by-enhancing-root-organogenesis-and-hormonal-responses
#38
JOURNAL ARTICLE
Kirán Rubí Jiménez Vázquez, José López-Hernández, Elizabeth García-Cárdenas, Ramón Pelagio-Flores, Jesús Salvador López-Bucio, Anahí Canedo Téxon, Enrique Ibarra-Laclette, José López-Bucio
Soil alkalinity is a critical environmental factor for plant growth and distribution in ecosystems. An alkaline condition (pH > 7) is imposed by the rising concentration of hydroxides and cations, and prevails in semiarid and arid environments, which represent more than 25% of the total arable land of the world. Despite the great pressure exerted by alkalinity for root viability and plant survival, scarce information is available to understand how root microbes contribute to alkaline pH adaptation. Here, we assessed the effects of alkalinity on shoot and root biomass production, chlorophyll content, root growth and branching, lateral root primordia formation, and the expression of CYCB1, TOR kinase, and auxin and cytokinin-inducible trangenes in shoots and roots of Arabidopsis seedlings grown in Petri plates with agar-nutrient medium at pH values of 7...
December 29, 2023: Microbiological Research
https://read.qxmd.com/read/38206867/differential-expression-and-co-localization-of-transcriptional-factors-during-callus-transition-to-differentiation-for-shoot-organogenesis-in-the-water-fern-ceratopteris-richardii
#39
JOURNAL ARTICLE
Yuan-Le Xiao, Gui-Sheng Li
BACKGROUND AND AIMS: In flowering plants, regeneration can be achieved by a variety of approaches, and different sets of transcriptional factors are involved in these processes. However, regeneration in taxa other than flowering plants is still a mystery. Ceratopteris richardii is a representative fern capable of both direct and indirect organogenesis, and this study aims to investigate the genetics underlying the transition from callus proliferation to differentiation. METHODS: Morphological and histological analyses were used to determine the type of regeneration involved...
January 11, 2024: Annals of Botany
https://read.qxmd.com/read/38202430/elicitation-induced-%C3%AE-amyrin-synthesis-in-tylophora-indica-in-vitro-cultures-and-comparative-phytochemical-analyses-of-in-vivo-and-micropropagated-plants
#40
JOURNAL ARTICLE
Jyoti Mamgain, Abdul Mujib, Yashika Bansal, Basit Gulzar, Nadia Zafar, Rukaya Syeed, Ali Alsughayyir, Yaser Hassan Dewir
Tylophora indica (Burm. f.) Merrill is an endangered medicinal plant that possesses various active agents, such as tylophorinine, kaempferol, quercetin, α-amyrin and beta-sitosterol, with multiple medicinal benefits. α-amyrin, a triterpenoid, is widely known for its antimicrobial, anti-inflammatory, gastroprotective and hepatoprotective properties. In this study, we investigated the metabolite profiling of tissues and the effects of cadmium chloride and chitosan on in vitro accumulation of alkaloids in T...
December 31, 2023: Plants (Basel, Switzerland)
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