keyword
https://read.qxmd.com/read/36001356/molecular-characterization-of-the-immediate-wound-response-of-the-solitary-ascidian-polycarpa-mytiligera
#41
JOURNAL ARTICLE
Noam Hendin, Tal Gordon, Noa Shenkar, Omri Wurtzel
BACKGROUND: Injury response is key to successful regeneration. Yet, transcriptome analyses of injury response were performed only on a handful of regenerative organisms. Here, we studied the injury response of the solitary ascidian Polycarpa mytiligera, an emerging model system, capable of regenerating any body part. We used the siphon as a model for studying transcriptional changes following injury, and identified genes that were activated in the initial 24 hours post-amputation (hpa)...
August 24, 2022: Developmental Dynamics
https://read.qxmd.com/read/35966072/integrated-analysis-of-proteomics-and-metabolomics-in-girls-with-central-precocious-puberty
#42
JOURNAL ARTICLE
Mei Li, Dan Lan, Yanfei Chen
Background: Central precocious puberty (CPP) is a multifactorial and complex condition. Traditional studies focusing on a single indicator cannot always elucidate this panoramic condition but these may be revealed by using omics techniques. Objective: Proteomics and metabolomics analysis of girls with CPP were compared to normal controls and the potential biomarkers and pathways involved were explored. Methods: Serum proteins and metabolites from normal girls and those with CPP were compared by LC-MS/MS...
2022: Frontiers in Endocrinology
https://read.qxmd.com/read/35821276/using-a-peptide-based-mass-spectrometry-approach-to-quantitate-proteolysis-of-an-intact-heterogeneous-procollagen-substrate-by-bmp1-for-antagonistic-antibody-screening
#43
JOURNAL ARTICLE
Cong Wu, Ryan Cook, Ping Wu, Neha Srikumar, Elin Chee, William S Sawyer, Hua Wang, Meredith Hazen, Isidro Hotzel, Elsa-Noah N'Diaye, Ning Ding, Yichin Liu, John C Tran, Zhengmao Ye
Proteases are critical proteins involved in cleaving substrates that may impact biological pathways, cellular processes, or disease progression. In the biopharmaceutical industry, modulating the levels of protease activity is an important strategy for mitigating many types of diseases. While a variety of analytical tools exist for characterizing substrate cleavages, in vitro functional screening for antibody inhibitors of protease activity using physiologically relevant intact protein substrates remains challenging...
September 2022: Analytical and Bioanalytical Chemistry
https://read.qxmd.com/read/35777468/pdgf-d-prodomain-differentially-inhibits-the-biological-activities-of-pdgf-d-and-pdgf-b
#44
JOURNAL ARTICLE
Linli Li, Dan Wu, Xiaohong Qin, Li-Zhi Mi
As a member of PDGF/VEGF (Platelet-derived growth factor/ Vascular endothelial growth factor) growth factors, PDGF-D regulates blood vessel development, wound healing, innate immunity, and organogenesis. Unlike PDGF-A and PDGF-B, PDGF-D has an additional CUB (Complement C1r/C1s, Uegf, Bmp1) domain at the N-terminus of its growth factor domain, and thus it is secreted in a latent, inactive complex, which needs to be proteolytically activated for its biological activities. However, how the CUB domain contributes to the latency and activation of the growth factor remains elusive...
June 28, 2022: Journal of Molecular Biology
https://read.qxmd.com/read/35758607/early-pregnancy-human-decidua-gamma-delta-t-cells-exhibit-tissue-resident-and-specific-functional-characteristics
#45
JOURNAL ARTICLE
Shuo Yang, Ting Feng, ChengYong Ma, Tiehao Wang, Hongqin Chen, Liman Li, Yuan Liu, Bin Zhou, Rong Zhou, Hong Li
A successful pregnancy is a complicated process that builds upon two aspects of the maternal immune system that need to be balanced. As one of the indispensable groups of immune cell at the maternal-fetal interface, the decidual gamma/delta (γδ) T cells have attracted research attention in normal pregnancy and miscarriage. However, the role of γδ T cells in fetal growth remains poorly understood. Here we found that the γδ T cell population resident in decidua during early pregnancy was enriched and secreted growth factors including growth differentiation factor 15 (GDF15) and bone morphogenetic protein 1 (BMP1)...
June 27, 2022: Molecular Human Reproduction
https://read.qxmd.com/read/35528238/a-novel-risk-score-model-based-on-eleven-extracellular-matrix-related-genes-for-predicting-overall-survival-of-glioma-patients
#46
JOURNAL ARTICLE
Xiaodong Li, Yichang Wang, Wei Wu, Jianyang Xiang, Lei Qi, Ning Wang, Maode Wang, Hai Yu
Gliomas are the most common lethal primary brain tumors with variable survival outcomes for patients. The extracellular matrix (ECM) is linked with clinical prognosis of glioma patients, but it is not commonly used as a clinical indicator. Herein, we investigated changes in ECM-related genes (ECMRGs) via analyzing the transcriptional data of 938 gliomas from TCGA and CGGA datasets. Based on least absolute shrinkage and selection operator (LASSO) Cox regression analysis, a 11-ECMRG signature that is strongly linked with overall survival (OS) in glioma patients was identified...
2022: Journal of Oncology
https://read.qxmd.com/read/35409069/elk3-controls-gastric-cancer-cell-migration-and-invasion-by-regulating-ecm-remodeling-related-genes
#47
JOURNAL ARTICLE
Minwook Lee, Hyeon-Ju Cho, Kyung-Soon Park, Hae-Yun Jung
Current therapeutic strategies for gastric cancer, including surgery and chemotherapy improve patient survival; however, the survival rate of patients with metastatic gastric cancer is very low. The molecular mechanisms underlying the dissemination of gastric cancer cells to distant organs are currently unknown. Here, we demonstrate that the E26 transformation-specific (ETS) transcription factor ELK3 ( ELK3 ) gene is required for the migration and invasion of gastric cancer cells. The ELK3 gene modulates the expression of extracellular matrix (ECM) remodeling-related genes, such as bone morphogenetic protein ( BMP1 ), lysyl oxidase like 2 ( LOXL2 ), Snail family transcriptional repressor 1 ( SNAI1 ), serpin family F member 1 ( SERPINF1 ), decorin ( DCN ), and nidogen 1 ( NID1 ) to facilitate cancer cell dissemination...
March 28, 2022: International Journal of Molecular Sciences
https://read.qxmd.com/read/35361882/bmp1-is-not-required-for-lung-fibrosis-in-mice
#48
JOURNAL ARTICLE
Hsiao-Yen Ma, Elsa-Noah N'Diaye, Patrick Caplazi, Zhiyu Huang, Alexander Arlantico, Surinder Jeet, Aaron Wong, Hans D Brightbill, Qingling Li, Weng Ruth Wong, Wendy Sandoval, Lucinda Tam, Robert Newman, Merone Roose-Girma, Ning Ding
Bone morphogenetic protein 1 (BMP1) belongs to the astacin/BMP1/tolloid-like family of zinc metalloproteinases, which play a fundamental role in the development and formation of extracellular matrix (ECM). BMP1 mediates the cleavage of carboxyl terminal (C-term) propeptides from procollagens, a crucial step in fibrillar collagen fiber formation. Blocking BMP1 by small molecule or antibody inhibitors has been linked to anti-fibrotic activity in the preclinical models of skin, kidney and liver fibrosis. Therefore, we reason that BMP1 may be important for the pathogenesis of lung fibrosis and BMP1 could be a potential therapeutic target for progressive fibrotic disease such as idiopathic pulmonary fibrosis (IPF)...
March 31, 2022: Scientific Reports
https://read.qxmd.com/read/35361387/hydrostatic-pressure-facilitates-calcium-deposition-and-osteogenic-gene-expression-in-the-osteoblastic-differentiation-of-placenta-derived-multipotent-cells
#49
JOURNAL ARTICLE
Chih-Chien Cheng, Chih-Ang Chung, Chih-Ju Chang, Yu-Che Cheng, Chi-Jung Huang, Chih-Cheng Chien, Hsi-Ting Lin
OBJECTIVE: We tested the osteoblastic differentiation effects caused by physical stimulation such as hydrostatic pressure using placenta-derived multipotent cells. MATERIALS AND METHODS: The placenta-derived multipotent cells (PDMCs) were treated with osteogenic medium to induce PDMCs differentiation into osteoblast-like cells. The induced PDMCs were stimulated using hydrostatic pressure at a magnitude of 30 kPa for 1 h/day for up to 12 days. The calcium deposition monitored by Alizarin Red staining and the calcium content of each experimental group were quantified...
March 2022: Taiwanese Journal of Obstetrics & Gynecology
https://read.qxmd.com/read/35328709/cleavage-of-loxl1-by-bmp1-and-adamts14-proteases-suggests-a-role-for-proteolytic-processing-in-the-regulation-of-loxl1-function
#50
JOURNAL ARTICLE
Tamara Rosell-García, Sergio Rivas-Muñoz, Alain Colige, Fernando Rodriguez-Pascual
Members of the lysyl oxidase (LOX) family catalyze the oxidative deamination of lysine and hydroxylysine residues in collagen and elastin in the initiation step of the formation of covalent cross-links, an essential process for connective tissue maturation. Proteolysis has emerged as an important level of regulation of LOX enzymes with the cleavage of the LOX isoform by metalloproteinases of the BMP1 (bone morphogenetic protein 1) and ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) families as a model example...
March 18, 2022: International Journal of Molecular Sciences
https://read.qxmd.com/read/35072459/resolving-the-hydride-transfer-pathway-in-oxidative-conversion-of-proline-to-pyrrole
#51
JOURNAL ARTICLE
Atanu Acharya, Dongqi Yi, Anna Pavlova, Vinayak Agarwal, James C Gumbart
Thiotemplated pyrrole is a prevailing intermediate in the synthesis of numerous natural products in which the pyrrole is tethered to a carrier protein (CP). Biosynthesis of the pyrrole requires oxidation of an l-proline side chain. Herein, we investigate the biocatalytic mechanism of proline-to-pyrrole synthesis by molecular dynamics simulations, quantum mechanics/molecular mechanics simulations, and electronic structure calculations using the recently reported (Thapa, H. R., et al. Biochemistry 2019 , 58 , 918) structure of a type II nonribosomal protein synthetase (NRPS) Bmp3-Bmp1 (Oxidase-CP) complex...
January 24, 2022: Biochemistry
https://read.qxmd.com/read/35065254/identification-of-three-immune-subtypes-characterized-by-distinct-tumor-immune-microenvironment-and-therapeutic-response-in-stomach-adenocarcinoma
#52
JOURNAL ARTICLE
Yimiao Zhu, Yu Zhao, Zhongsheng Cao, Zhihao Chen, Wensheng Pan
BACKGROUND: In primary stomach adenocarcinoma (STAD), the tumor immune microenvironment (TIME) is important for cancer occurrence and progression; however, its clinical significance remains unclear. This study investigated the association between patient survival, TIME, and therapeutic response to STAD. METHODS: Gene expression profiles of STAD cases were collected from the Cancer Genome Atlas (TCGA) database and Gene Expression Omnibus. Molecular subtypes were explored with consistent clustering methods according to 119 immune signatures and the infiltrating scores of 22 immune cells using the Multi-Omics Immuno-Oncology Biological Research algorithm...
January 19, 2022: Gene
https://read.qxmd.com/read/35013172/bone-morphogenetic-protein-1-3-inhibition-decreases-scar-formation-and-supports-cardiomyocyte-survival-after-myocardial-infarction
#53
JOURNAL ARTICLE
Slobodan Vukicevic, Andrea Colliva, Vera Kufner, Valentina Martinelli, Silvia Moimas, Simone Vodret, Viktorija Rumenovic, Milan Milosevic, Boris Brkljacic, Diana Delic-Brkljacic, Ricardo Correa, Mauro Giacca, Manuel Maglione, Tatjana Bordukalo-Niksic, Ivo Dumic-Cule, Serena Zacchigna
Despite the high prevalence of ischemic heart diseases worldwide, no antibody-based treatment currently exists. Starting from the evidence that a specific isoform of the Bone Morphogenetic Protein 1 (BMP1.3) is particularly elevated in both patients and animal models of myocardial infarction, here we assess whether its inhibition by a specific monoclonal antibody reduces cardiac fibrosis. We find that this treatment reduces collagen deposition and cross-linking, paralleled by enhanced cardiomyocyte survival, both in vivo and in primary cultures of cardiac cells...
January 10, 2022: Nature Communications
https://read.qxmd.com/read/34909716/epidermal-integrin-%C3%AE-3%C3%AE-1-regulates-tumor-derived-proteases-bmp-1-matrix-metalloprotease-9-and-matrix-metalloprotease-3
#54
JOURNAL ARTICLE
Whitney M Longmate, Rakshitha Pandulal Miskin, Livingston Van De Water, C Michael DiPersio
As the major cell surface receptors for the extracellular matrix, integrins regulate adhesion and migration and have been shown to drive tumor growth and progression. Previous studies showed that mice lacking integrin α3β1 in the epidermis fail to form skin tumors during two-step chemical tumorigenesis, indicating a protumorigenic role for α3β1. Furthermore, genetic ablation of α3β1 in established skin tumors caused their rapid regression, indicating an essential role in the maintenance of tumor growth...
June 2021: JID innovations
https://read.qxmd.com/read/34902613/osteogenesis-imperfecta-in-140-turkish-families-molecular-spectrum-and-comparison-of-long-term-clinical-outcome-of-those-with-col1a1-a2-and-biallelic-variants
#55
JOURNAL ARTICLE
Beyhan Tüysüz, Leyla Elkanova, Dilek Uludağ Alkaya, Çağrı Güleç, Güven Toksoy, Nilay Güneş, Hakan Yazan, A Ilhan Bayhan, Timur Yıldırım, Gözde Yeşil, Oya Uyguner
BACKGROUND: Osteogenesis imperfecta (OI) is a clinically and genetically heterogeneous group of diseases characterized by increased bone fragility and deformities. Although most patients with OI have heterozygous mutations in COL1A1 or COL1A2, 17 genes have been reported to cause OI, most of which are autosomal recessive (AR) inherited, during the last years. The aim of this study is to determine the mutation spectrum in Turkish OI cohort and to investigate the genotype-phenotype correlation...
December 10, 2021: Bone
https://read.qxmd.com/read/34750202/non-collagen-pathogenic-variants-resulting-in-the-osteogenesis-imperfecta-phenotype-in-children-a-single-country-observational-cohort-study
#56
JOURNAL ARTICLE
Patrick Thornley, Nicholas Bishop, Duncan Baker, Joanna Brock, Paul Arundel, Christine Burren, Sarah Smithson, Catherine DeVile, Belinda Crowe, Jeremy Allgrove, Vrinda Saraff, Nick Shaw, Meena Balasubramanian
BACKGROUND/OBJECTIVES: In England, children (0-18 years) with severe, complex and atypical osteogenesis imperfecta (OI) are managed by four centres (Birmingham, Bristol, London, Sheffield) in a 'Highly Specialised Service' (HSS OI); affected children with a genetic origin for their disease that is not in COL1A1 or COL1A2 form the majority of the 'atypical' group, which has set criteria for entry into the service. We have used the data from the service to assess the range and frequency of non-collagen pathogenic variants resulting in OI in a single country...
May 2022: Archives of Disease in Childhood
https://read.qxmd.com/read/34685774/neuron-radial-glial-cell-communication-via-bmp-id1-signaling-is-key-to-long-term-maintenance-of-the-regenerative-capacity-of-the-adult-zebrafish-telencephalon
#57
JOURNAL ARTICLE
Gaoqun Zhang, Luisa Lübke, Fushun Chen, Tanja Beil, Masanari Takamiya, Nicolas Diotel, Uwe Strähle, Sepand Rastegar
The central nervous system of adult zebrafish displays an extraordinary neurogenic and regenerative capacity. In the zebrafish adult brain, this regenerative capacity relies on neural stem cells (NSCs) and the careful management of the NSC pool. However, the mechanisms controlling NSC pool maintenance are not yet fully understood. Recently, Bone Morphogenetic Proteins (BMPs) and their downstream effector Id1 (Inhibitor of differentiation 1) were suggested to act as key players in NSC maintenance under constitutive and regenerative conditions...
October 19, 2021: Cells
https://read.qxmd.com/read/34555811/inhibition-of-fstl3-abates-the-proliferation-and-metastasis-of-renal-cell-carcinoma-via-the-gsk-3%C3%AE-%C3%AE-catenin-signaling-pathway
#58
JOURNAL ARTICLE
Fengfeng Sun, Peng Sun, Xiaofeng Yang, Liangliang Hu, Jianguo Gao, Tao Tian
Renal cell carcinoma (RCC) is a lethal malignancy of the genitourinary system. Follistatin-like 3 (FSTL3), which mediates cell differentiation and growth, acts as a biomarker of tumors and participates in cancer development and progression. Presently, the FSTL3's functions in RCC were investigated. Quantitative reverse transcription PCR (qRT-PCR), Western Blot, and enzyme linked immunosorbent assay (ELISA) were conducted to verify FSTL3 expression in RCC tissues and cell lines. BrdU assay and CCK8 experiment were made to monitor cell proliferation...
September 23, 2021: Aging
https://read.qxmd.com/read/34527572/pulmonary-neuroendocrine-neoplasms-overexpressing-epithelial-mesenchymal-transition-mechanical-barriers-genes-lack-immune-suppressive-response-and-present-an-increased-risk-of-metastasis
#59
JOURNAL ARTICLE
Tabatha Gutierrez Prieto, Camila Machado Baldavira, Juliana Machado-Rugolo, Cecília Farhat, Eloisa Helena Ribeiro Olivieri, Vanessa Karen de Sá, Eduardo Caetano Abilio da Silva, Marcelo Luiz Balancin, Alexandre Muxfeldt Ab Saber, Teresa Yae Takagaki, Vladmir Cláudio Cordeiro de Lima, Vera Luiza Capelozzi
Typical carcinoids (TC), atypical carcinoids (AC), large cell neuroendocrine carcinomas (LCNEC), and small cell lung carcinomas (SCLC) encompass a bimodal spectrum of metastatic tumors with morphological, histological and histogenesis differences, The hierarchical structure reveals high cohesiveness between neoplastic cells by mechanical desmosomes barrier assembly in carcinoid tumors and LCNEC, while SCLC does not present an organoid arrangement in morphology, the neoplastic cells are less cohesive. However, the molecular mechanisms that lead to PNENs metastasis remain largely unknown and require further study...
2021: Frontiers in Oncology
https://read.qxmd.com/read/34435185/bmp-antagonists-in-tissue-development-and-disease
#60
REVIEW
Annkatrin Correns, Laura-Marie A Zimmermann, Clair Baldock, Gerhard Sengle
Bone morphogenic proteins (BMPs) are important growth regulators in embryogenesis and postnatal homeostasis. Their tight regulation is crucial for successful embryonic development as well as tissue homeostasis in the adult organism. BMP inhibition by natural extracellular biologic antagonists represents the most intensively studied mechanistic concept of BMP growth factor regulation. It was shown to be critical for numerous developmental programs, including germ layer specification and spatiotemporal gradients required for the establishment of the dorsal-ventral axis and organ formation...
August 2021: Matrix biology plus
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