keyword
https://read.qxmd.com/read/38714098/transcriptomic-profiling-of-rana-lithobates-catesbeiana-back-skin-during-natural-and-thyroid-hormone-induced-metamorphosis-under-different-temperature-regimes-with-particular-emphasis-on-innate-immune-system-components
#61
JOURNAL ARTICLE
Lorissa M Corrie, Haley Kuecks-Winger, Hossein Ebrahimikondori, Inanc Birol, Caren C Helbing
As amphibians undergo thyroid hormone (TH)-dependent metamorphosis from an aquatic tadpole to the terrestrial frog, their innate immune system must adapt to the new environment. Skin is a primary line of defense, yet this organ undergoes extensive remodelling during metamorphosis and how it responds to TH is poorly understood. Temperature modulation, which regulates metamorphic timing, is a unique way to uncover early TH-induced transcriptomic events. Metamorphosis of premetamorphic tadpoles is induced by exogenous TH administration at 24 °C but is paused at 5 °C...
May 1, 2024: Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics
https://read.qxmd.com/read/38714079/photothermal-and-ferroptosis-synergistic-therapy-for-liver-cancer-using-iron-doped-polydopamine-nanozymes
#62
JOURNAL ARTICLE
Yunchun Li, Linqun Qian, Zhouping Yang, Siyu Li, Aimin Wu, Xianxiang Wang
An innovative nanozyme, iron-doped polydopamine (Fe-PDA), which integrates iron ions into a PDA matrix, conferred peroxidase-mimetic activity and achieved a substantial photothermal conversion efficiency of 43.5 %. Fe-PDA mediated the catalysis of H2 O2 to produce toxic hydroxyl radicals (•OH), thereby facilitating lipid peroxidation in tumour cells and inducing ferroptosis. Downregulation of solute carrier family 7 no. 11 (SLC7A11) and solute carrier family 3 no. 2 (SLC3A2) in System Xc- resulted in decreased intracellular glutathione (GSH) production and inactivation of the nuclear factor erythroid 2-related factor 2 (NRF2)-glutathione peroxidase 4 (GPX4) pathway, contributing to ferroptosis...
April 10, 2024: Colloids and Surfaces. B, Biointerfaces
https://read.qxmd.com/read/38714049/enhancing-gastric-cancer-early-detection-a-multi-verse-optimized-feature-selection-model-with-crossover-information-feedback
#63
JOURNAL ARTICLE
Jiejun Lin, Fangchao Zhu, Xiaoyu Dong, Rizeng Li, Jisheng Liu, Jianfu Xia
Gastric cancer (GC), an acknowledged malignant neoplasm, threatens life and digestive system functionality if not detected and addressed promptly in its nascent stages. The indispensability of early detection for GC to augment treatment efficacy and survival prospects forms the crux of this investigation. Our study introduces an innovative wrapper-based feature selection methodology, referred to as bCIFMVO-FKNN-FS, which integrates a crossover-information feedback multi-verse optimizer (CIFMVO) with the fuzzy k-nearest neighbors (FKNN) classifier...
April 29, 2024: Computers in Biology and Medicine
https://read.qxmd.com/read/38714048/accelerating-spliced-alignment-of-long-rna-sequencing-reads-using-parallel-maximal-exact-match-retrieval
#64
JOURNAL ARTICLE
Rongxing Wang, Yanju Zhang
The genomics landscape has undergone a revolutionary transformation with the emergence of third-generation sequencing technologies. Fueled by the exponential surge in sequencing data, there is an urgent demand for accurate and rapid algorithms to effectively handle this burgeoning influx. Under such circumstances, we developed a parallelized, yet accuracy-lossless algorithm for maximal exact match (MEM) retrieval to strategically address the computational bottleneck of uLTRA, a leading spliced alignment algorithm known for its precision in handling long RNA sequencing (RNA-seq) reads...
May 3, 2024: Computers in Biology and Medicine
https://read.qxmd.com/read/38713967/life-regression-based-patch-slimming-for-vision-transformers
#65
JOURNAL ARTICLE
Jiawei Chen, Lin Chen, Jiang Yang, Tianqi Shi, Lechao Cheng, Zunlei Feng, Mingli Song
Vision transformers have achieved remarkable success in computer vision tasks by using multi-head self-attention modules to capture long-range dependencies within images. However, the high inference computation cost poses a new challenge. Several methods have been proposed to address this problem, mainly by slimming patches. In the inference stage, these methods classify patches into two classes, one to keep and the other to discard in multiple layers. This approach results in additional computation at every layer where patches are discarded, which hinders inference acceleration...
April 25, 2024: Neural Networks: the Official Journal of the International Neural Network Society
https://read.qxmd.com/read/38713953/yolk-shell-fes-n-doped-carbon-nanosphere-as-superior-anode-materials-for-sodium-ion-batteries
#66
JOURNAL ARTICLE
Yongjie Jiang, Anqi Li, Qichang Pan, Shunchao Wang, Man Zhang, Sijiang Hu, Yahao Li, Hongqiang Wang, Qingyu Li, Fenghua Zheng
Iron sulfides have shown great potential as anode materials for sodium-ion batteries (SIBs) because of their high sodium storage capacity and low cost. Nevertheless, iron sulfides generally exhibit unsatisfied electrochemical performance induced by sluggish electron/ion transfer and severe pulverization upon the sodiation/desodiation process. Herein, we constructed a yolk-shell FeS@NC nanosphere with an N-doped carbon shell and FeS particle core via a simple hydrothermal method, followed by in-situ polymerization and vulcanization...
May 3, 2024: Journal of Colloid and Interface Science
https://read.qxmd.com/read/38713952/synergistic-electrochemical-catalysis-by-high-entropy-metal-phosphide-in-lithium-sulfur-batteries
#67
JOURNAL ARTICLE
Sisi Liu, Manfang Chen, Yixin Luo, Yongqian He, Wanqi Zhang, Ying Chen, Mengqing Wang, Yongjie Ye, Kai Zhu, Yan Luo, Ruizhi Yu, Jianhua Hou, Hong Liu, Hongbo Shu, Xianyou Wang
The shuttle effect and sluggish redox kinetics of polysulfides have hindered the development of lithium-sulfur batteries (LSBs) as premier energy storage devices. To address these issues, a high-entropy metal phosphide (NiCoMnFeCrP) was synthesized using the sol-gel method. NiCoMnFeCrP, with its rich metal species, exhibits strong synergistic effects and provides numerous catalytic active sites for the conversion of polysulfides. These active sites, possessing significant polarity, can bond with polysulfides...
April 30, 2024: Journal of Colloid and Interface Science
https://read.qxmd.com/read/38713928/microbial-response-to-a-port-fuel-spill-community-dynamics-and-potential-for-bioremediation
#68
JOURNAL ARTICLE
Rafaela Perdigão, Maria Paola Tomasino, Catarina Magalhães, Maria F Carvalho, C Marisa R Almeida, Ana P Mucha
Following a fuel leakage inside a Portuguese maritime port, we conducted parallel 30-day experiments using contaminated seawater and fuel, sampled five days after the incident. This study aimed to (i)survey the native microbial community response to the spilled fuel and (ii)evaluate the efficacy of bioremediation, both biostimulation and bioaugmentation with a lyophilized bacterial consortium (Rhodococcus erythropolis, Pseudomonas sp.), in accelerating hydrocarbon degradation. Metabarcoding analysis revealed a shift in microbial communities, with increased abundance of hydrocarbon-degraders (e...
May 6, 2024: Marine Pollution Bulletin
https://read.qxmd.com/read/38713886/evaluating-the-effects-of-hormone-therapy-termination-on-skeletal-muscle-and-physical-independence-in-postmenopausal-women
#69
JOURNAL ARTICLE
Jorgen Antonin Wullems, Hans Degens, Christopher Ian Morse, Gladys Leopoldine Onambélé-Pearson
OBJECTIVE: In women, the age-related decline in skeletal muscle structure and function is accelerated after menopause, which implicates the role of decreased circulating estrogen levels. Indeed, boosting estrogen, by means of postmenopausal hormone therapy (HT), generally proves beneficial to skeletal muscle. The evidence regarding whether these benefits persist even after cessation of HT is limited, nor is it clear how physical behavior (PB) impacts on benefits. Hence, this exploratory study focused on the interplay between HT administration/cessation, PB and in vivo skeletal muscle structure and function...
May 7, 2024: Menopause: the Journal of the North American Menopause Society
https://read.qxmd.com/read/38713803/the-impact-of-maternal-smoking-during-pregnancy-and-the-age-of-smoking-initiation-on-incident-dementia-a-prospective-cohort-study
#70
JOURNAL ARTICLE
Jiyong Liu, Yi Xiao, Xiaoting Zheng, Yangfan Cheng, Sirui Zhang, Yuanzheng Ma, Qirui Jiang, Shichan Wang, Chunyu Li, Huifang Shang
INTRODUCTION: The impact of early-life tobacco exposure on dementia has remained unknown. METHODS: Using the UK Biobank, the associations of maternal smoking during pregnancy (MSDP) and age of smoking initiation (ASI) with the onset time of all-cause dementia were estimated with accelerated failure time models. The effects of MSDP and ASI on brain structure and their genetic correlation to Alzheimer's disease (AD) were analyzed. A Mendelian randomization (MR) analysis was conducted...
May 7, 2024: Alzheimer's & Dementia: the Journal of the Alzheimer's Association
https://read.qxmd.com/read/38713698/do-political-connections-facilitate-or-inhibit-firms-digital-transformation-evidence-from-china-s-a-share-private-listed-companies
#71
JOURNAL ARTICLE
Xingye Jin, Tao Li, Yupeng Shi, Mingrui Zhang
Given the advent of the digital era, digital transformation has become necessary for enterprise development. Political connections are the most important resources for enterprise development in most countries. However, the impact of political connections on corporate digital transformation has yet to be verified. This study uses ERNIE, a large language model, to construct a measurement of corporate digital transformation from the perspective of digital technology application through a textual analysis of the annual reports of A-share privately listed companies from 2008 to 2020 and analyzes the impact of political connections on corporate digital transformation and its mechanism of action...
2024: PloS One
https://read.qxmd.com/read/38713652/a-new-method-based-on-melatonin-mediated-seed-germination-to-quickly-remove-pesticide-residues-and-improve-the-nutritional-quality-of-contaminated-grains
#72
JOURNAL ARTICLE
Lingyun Li, Baoyan Li, Henghua Qu, Shan Tian, Zimeng Xu, Lulu Zhao, Xueqin Li, Baoyou Liu
In the present study, we attempted to use melatonin combined with germination treatment to remove pesticide residues from contaminated grains. High levels of pesticide residues were detected in soybean seeds after soaking with chlorothalonil (10 mM) and malathion (1 mM) for 2 hours. Treatment with 50 μM melatonin for 5 days completely removed the pesticide residues, while in the control group, only 61-71% of pesticide residues were removed from soybean sprouts. Compared with the control, melatonin treatment for 7 days further increased the content of ascorbic acid (by 48-66%), total phenolics (by 52-68%), isoflavones (by 22-34%), the total antioxidant capacity (by 37-40%), and the accumulated levels of unsaturated fatty acids (C18:1, C18:2, and C18:3) (by 17-30%) in soybean sprouts...
2024: PloS One
https://read.qxmd.com/read/38713633/development-of-a-computable-phenotype-for-prehospital-pediatric-asthma-encounters
#73
JOURNAL ARTICLE
Ira Harmon, Jennifer Brailsford, Isabel Sanchez-Cano, Jennifer Fishe
Introduction: Asthma exacerbations are a common cause of pediatric Emergency Medical Services (EMS) encounters. Accordingly, prehospital management of pediatric asthma exacerbations has been designated an EMS research priority. However, accurate identification of pediatric asthma exacerbations from the prehospital record is nuanced and difficult due to the heterogeneity of asthma symptoms, especially in children. Therefore, this study's objective was to develop a prehospital-specific pediatric asthma computable phenotype (CP) that could accurately identify prehospital encounters for pediatric asthma exacerbations...
May 7, 2024: Prehospital Emergency Care
https://read.qxmd.com/read/38713627/unveiling-the-role-of-proton-concentration-in-dinuclear-metal-complexes-for-boosting-photocatalytic-co-2-reduction
#74
JOURNAL ARTICLE
Hui-Feng Wang, Hong-Juan Wang, Di-Chang Zhong, Tong-Bu Lu
The reaction kinetics of photocatalytic CO2 reduction is highly dependent on the transfer rate of electrons and protons to the CO2 molecules adsorbed on catalytic centers. Studies on uncovering the proton effect in catalysts on photocatalytic activity of CO2 reduction are significant but rarely reported. In this paper, we, from the molecular level, revealed that the photocatalytic activity of CO2 reduction is closely related to the proton availability in catalysts. Specifically, four dinuclear Co(II) complexes based on Robson-type ligands with different number of carboxylic groups (- n COOH; n = 0, 2, 4, 6) were designed and synthesized...
May 14, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38713520/potential-limitations-of-micro-dystrophin-gene-therapy-for-duchenne-muscular-dystrophy
#75
JOURNAL ARTICLE
Cora C Hart, Young Il Lee, Jun Xie, Guangping Gao, Brian L Lin, David W Hammers, H Lee Sweeney
Clinical trials delivering high doses of adeno-associated viruses (AAVs) expressing truncated dystrophin molecules (micro-dystrophins) are underway for individuals with Duchenne muscular dystrophy (DMD). We examined the efficiency and efficacy of this strategy with four micro-dystrophin constructs (three in clinical trials and a variant of the largest clinical construct), in a severe mouse model of DMD, using doses of AAV comparable to those used in the clinical trials. We achieved high levels of micro-dystrophin expression in striated muscle with cardiac expression ~10 fold higher than that observed in skeletal muscle...
May 7, 2024: JCI Insight
https://read.qxmd.com/read/38713438/transcriptome-analysis-reveals-dynamic-microglial-induced-a1-astrocyte-reactivity-via-c3-c3ar-nf-%C3%AE%C2%BAb-signaling-after-ischemic-stroke
#76
JOURNAL ARTICLE
Song Wang, Yuhualei Pan, Chengjie Zhang, Yushang Zhao, Huan Wang, Huixuan Ma, Jinmei Sun, Song Zhang, Jingyi Yao, Dan Xie, Yongbo Zhang
Microglia and astrocytes are key players in neuroinflammation and ischemic stroke. A1 astrocytes are a subtype of astrocytes that are extremely neurotoxic and quickly kill neurons. Although the detrimental A1 astrocytes are present in many neurodegenerative diseases and are considered to accelerate neurodegeneration, their role in the pathophysiology of ischemic stroke is poorly understood. Here, we combined RNA-seq, molecular and immunological techniques, and behavioral tests to investigate the role of A1 astrocytes in the pathophysiology of ischemic stroke...
May 7, 2024: Molecular Neurobiology
https://read.qxmd.com/read/38713327/correction-accelerated-hydroxychloroquine-toxic-retinopathy-response-to-letter
#77
Ayushi Mohapatra, Prasad Gupta, Dhanashree Ratra
No abstract text is available yet for this article.
May 7, 2024: Documenta Ophthalmologica. Advances in Ophthalmology
https://read.qxmd.com/read/38713256/the-role-of-tumor-associated-macrophages-in-tumor-immune-evasion
#78
REVIEW
Ruizhe Huang, Ting Kang, Siyu Chen
BACKGROUND: Tumor growth is closely linked to the activities of various cells in the tumor microenvironment (TME), particularly immune cells. During tumor progression, circulating monocytes and macrophages are recruited, altering the TME and accelerating growth. These macrophages adjust their functions in response to signals from tumor and stromal cells. Tumor-associated macrophages (TAMs), similar to M2 macrophages, are key regulators in the TME. METHODS: We review the origins, characteristics, and functions of TAMs within the TME...
May 7, 2024: Journal of Cancer Research and Clinical Oncology
https://read.qxmd.com/read/38713211/enhanced-extracellular-production-of-laccase-in-coprinopsis-cinerea-by-silencing-chitinase-gene
#79
JOURNAL ARTICLE
Dongbang Yao, Yuting Ma, Jie Ran, Jiaxiu Wang, Ursula Kües, Juanjuan Liu, Danya Zhou, Xuecheng Zhang, Zemin Fang, Yazhong Xiao
Laccase, a copper-containing polyphenol oxidase, is an important green biocatalyst. In this study, Laccase Lcc5 was homologous recombinantly expressed in Coprinopsis cinerea and a novel strategy of silencing chitinase gene expression was used to enhance recombinant Lcc5 extracellular yield. Two critical chitinase genes, ChiEn1 and ChiE2, were selected by analyzing the transcriptome data of C. cinerea FA2222, and their silent expression was performed by RNA interference (RNAi). It was found that silencing either ChiEn1 or ChiE2 reduced sporulation and growth rate, and increased cell wall sensitivity, but had no significant effect on mycelial branching...
May 7, 2024: Applied Microbiology and Biotechnology
https://read.qxmd.com/read/38713155/aurkb-promotes-colorectal-cancer-progression-by-triggering-the-phosphorylation-of-histone-h3-at-serine-10-to-activate-ccne1-expression
#80
JOURNAL ARTICLE
Ling Li, Ke Xie, Honghu Xie, Lei Wang, Zhong Li, Qicheng Lu, Jin Feng
Aurora kinase B (AURKB) initiates the phosphorylation of serine 10 on histone H3 (pH3S10), a crucial process for chromosome condensation and cytokinesis in mammalian mitosis. Nonetheless, the precise mechanisms through which AURKB regulates the cell cycle and contributes to tumorigenesis as an oncogenic factor in colorectal cancer (CRC) remain unclear. Here, we report that AURKB was highly expressed and positively correlated with Ki-67 expression in CRC. The abundant expression of AURKB promotes the growth of CRC cells and xenograft tumors in animal model...
May 6, 2024: Aging
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