keyword
https://read.qxmd.com/read/35069843/potential-biomarkers-of-acute-myocardial-infarction-based-on-co-expression-network-analysis
#21
JOURNAL ARTICLE
Zhaohui Hu, Ruhui Liu, Hairong Hu, Xiangjun Ding, Yuyao Ji, Guiyuan Li, Yiping Wang, Shengquan Xie, Xiaohong Liu, Zhiwen Ding
Acute myocardial infarction (AMI) is a common cause of death in numerous countries. Understanding the molecular mechanisms of the disease and analyzing potential biomarkers of AMI is crucial. However, specific diagnostic biomarkers have thus far not been fully established and candidate regulatory targets for AMI remain to be determined. In the present study, the AMI gene chip dataset GSE48060 comprising blood samples from control subjects with normal cardiac function (n=21) and patients with AMI (n=26) was downloaded from Gene Expression Omnibus...
February 2022: Experimental and Therapeutic Medicine
https://read.qxmd.com/read/34794440/selection-shapes-the-landscape-of-functional-variation-in-wild-house-mice
#22
JOURNAL ARTICLE
Raman Akinyanju Lawal, Uma P Arora, Beth L Dumont
BACKGROUND: Through human-aided dispersal over the last ~ 10,000 years, house mice (Mus musculus) have recently colonized diverse habitats across the globe, promoting the emergence of new traits that confer adaptive advantages in distinct environments. Despite their status as the premier mammalian model system, the impact of this demographic and selective history on the global patterning of disease-relevant trait variation in wild mouse populations is poorly understood. RESULTS: Here, we leveraged 154 whole-genome sequences from diverse wild house mouse populations to survey the geographic organization of functional variation and systematically identify signals of positive selection...
November 19, 2021: BMC Biology
https://read.qxmd.com/read/34558166/proteomic-analysis-of-aqueous-humor-in-canine-primary-angle-closure-glaucoma-in-american-cocker-spaniel-dogs
#23
JOURNAL ARTICLE
Seongjin Yun, Dabin Lee, Seonmi Kang, Dong Wook Kim, Youngsam Kim, Je-Yoel Cho, Kangmoon Seo
OBJECTIVE: To analyze proteomic profiles of the aqueous humor (AH) of canines with primary angle-closure glaucoma (PACG) and identify associated protein alterations. ANIMALS STUDIED: Six American Cocker Spaniels with PACG and six American Cocker Spaniels without ocular diseases. METHODS: Aqueous humor samples were collected from six American Cocker Spaniels with PACG at Seoul National University, VMTH, and six healthy Cocker Spaniels without ocular disease at Irion Animal Hospital...
September 2021: Veterinary Ophthalmology
https://read.qxmd.com/read/34527658/targeting-n-terminal-human-maltase-glucoamylase-to-unravel-possible-inhibitors-using-molecular-docking-molecular-dynamics-simulations-and-adaptive-steered-molecular-dynamics-simulations
#24
JOURNAL ARTICLE
Shitao Zhang, Yi Wang, Lu Han, Xueqi Fu, Song Wang, Wannan Li, Weiwei Han
There are multiple drugs for the treatment of type 2 diabetes, including traditional sulfonylureas biguanides, glinides, thiazolidinediones, α-glucosidase inhibitors, glucagon-like peptide-1 (GLP-1) receptor agonists, dipeptidyl peptidase IV (DPP-4) inhibitors, and sodium-glucose cotransporter 2 (SGLT2) inhibitors. α-Glucosidase inhibitors have been used to control postprandial glucose levels caused by type 2 diabetes since 1990. α-Glucosidases are rather crucial in the human metabolic system and are principally found in families 13 and 31...
2021: Frontiers in Chemistry
https://read.qxmd.com/read/34401673/genome-wide-study-of-copy-number-variation-implicates-multiple-novel-loci-for-schizophrenia-risk-in-han-chinese-family-trios
#25
JOURNAL ARTICLE
Xi Wu, Cong Huai, Lu Shen, Mo Li, Chao Yang, Juan Zhang, Luan Chen, Wenli Zhu, Lingzi Fan, Wei Zhou, Qinghe Xing, Lin He, Chunling Wan, Shengying Qin
Schizophrenia (SCZ) is a severe neuropsychiatric disorder that affects 1% of the global population. Copy number variations (CNVs) have been shown to play a critical role in its pathophysiology; however, only case-control studies on SCZ susceptibility CNVs have been conducted in Han Chinese. Here, we performed an array comparative genomic hybridization-based genome-wide CNV analysis in 100 Chinese family trios with SCZ. Burden test suggested that the SCZ probands carried more duplications than their healthy parents and unrelated healthy controls...
August 20, 2021: IScience
https://read.qxmd.com/read/34384498/identification-of-subgroups-along-the-glycolysis-cholesterol-synthesis-axis-and-the-development-of-an-associated-prognostic-risk-model
#26
JOURNAL ARTICLE
Enchong Zhang, Yijing Chen, Shurui Bao, Xueying Hou, Jing Hu, Oscar Yong Nan Mu, Yongsheng Song, Liping Shan
BACKGROUND: Skin cutaneous melanoma (SKCM) is one of the most highly prevalent and complicated malignancies. Glycolysis and cholesterogenesis pathways both play important roles in cancer metabolic adaptations. The main aims of this study are to subtype SKCM based on glycolytic and cholesterogenic genes and to build a clinical outcome predictive algorithm based on the subtypes. METHODS: A dataset with 471 SKCM specimens was downloaded from The Cancer Genome Atlas (TCGA) database...
August 12, 2021: Human Genomics
https://read.qxmd.com/read/34383808/importance-of-applying-mixed-generalized-additive-model-mgam-as-a-method-for-assessing-the-environmental-health-impacts-ambient-temperature-and-acute-myocardial-infarction-ami-among-elderly-in-shanghai-china
#27
JOURNAL ARTICLE
Xiaoqian Huang, Weiping Ma, Chikin Law, Jianfeng Luo, Naiqing Zhao
Association between acute myocardial infarction (AMI) morbidity and ambient temperature has been examined with generalized linear model (GLM) or generalized additive model (GAM). However, the effect size by these two methods might be biased due to the autocorrelation of time series data and arbitrary selection of degree of freedom of natural cubic splines. The present study analyzed how the climatic factors affected AMI morbidity for older adults in Shanghai with Mixed generalized additive model (MGAM) that addressed these shortcomings mentioned...
2021: PloS One
https://read.qxmd.com/read/34313877/study-on-potential-differentially-expressed-genes-in-stroke-by-bioinformatics-analysis
#28
JOURNAL ARTICLE
Xitong Yang, Pengyu Wang, Shanquan Yan, Guangming Wang
Stroke is a sudden cerebrovascular circulatory disorder with high morbidity, disability, mortality, and recurrence rate, but its pathogenesis and key genes are still unclear. In this study, bioinformatics was used to deeply analyze the pathogenesis of stroke and related key genes, so as to study the potential pathogenesis of stroke and provide guidance for clinical treatment. Gene Expression profiles of GSE58294 and GSE16561 were obtained from Gene Expression Omnibus (GEO), the differentially expressed genes (DEGs) were identified between IS and normal control group...
February 2022: Neurological Sciences
https://read.qxmd.com/read/34293081/neither-low-salivary-amylase-activity-cooling-cooked-white-rice-nor-single-nucleotide-polymorphisms-in-starch-digesting-enzymes-reduce-glycemic-index-or-starch-digestibility-a-randomized-crossover-trial-in-healthy-adults
#29
RANDOMIZED CONTROLLED TRIAL
Thomas M S Wolever, Ahmed El-Sohemy, Adish Ezatagha, Andreea Zurbau, Alexandra L Jenkins
BACKGROUND: It was suggested that low salivary-amylase activity (SAA) and cooling or stir-frying cooked starch decreases its digestibility and glycemic index. OBJECTIVE: We determined the effects of SAA, cooling, and single-nucleotide polymorphisms (SNPs) in the salivary amylase (AMY1), pancreatic amylase (AMY2A, AMY2B), maltase-glucoamylase (MGAM), and sucrase-isomaltase (SI) genes on starch digestibility and glycemic index of cooked polished rice. METHODS: Healthy subjects [pilot, n = 12; main, n = 20 with low-SAA (<50 U/mL), and n = 20 with high-SAA (>105 U/mL)] consumed test meals containing 25 g (pilot) or 50 g (main) available carbohydrate at a contract research organization using open-label (pilot) or assessor-blinded (main), randomized, crossover, Latin-square designs (trial registration: NCT03667963)...
November 8, 2021: American Journal of Clinical Nutrition
https://read.qxmd.com/read/34087697/woody-breast-myopathy-broiler-show-age-dependent-adaptive-differential-gene-expression-in-pectoralis-major-and-altered-in-vivo-triglyceride-kinetics-in-adipogenic-tissues
#30
JOURNAL ARTICLE
Pramir Maharjan, Antonio Beitia, Jordan Weil, Nawin Suesuttajit, Katie Hilton, Justina Caldas, Cole Umberson, Diego Martinez, Byungwhi Kong, Casey M Owens, Craig Coon
A study was conducted to understand the differentially expressed genes in Pectoralis (P) major under woody breast (WB) myopathy condition in a high yielding broiler strain using RNA-sequencing at the growing (d 21) and finishing (d 42 and d 56) grow-out ages. Follow-up study was conducted to understand the in vivo triglyceride (TG) synthesis (d 49) occurring in adipogenic tissues using deuterium oxide (2 H2 O) as a metabolic tracer. Results indicated the top physiological systems affected in myopathy broiler were related to the musculo-skeletal system (d 21, 42, and 56) and cardiovascular system (d 42 and 56)...
July 2021: Poultry Science
https://read.qxmd.com/read/34040049/proteomic-analysis-based-discovery-of-a-novel-biomarker-that-differentiates-intestinal-beh%C3%A3-et-s-disease-from-crohn-s-disease
#31
JOURNAL ARTICLE
Jihye Park, Daeun Jeong, Youn Wook Chung, Seunghan Han, Da Hye Kim, Jongwook Yu, Jae Hee Cheon, Ji-Hwan Ryu
Intestinal Behçet's disease (BD) and Crohn's disease (CD) present similar manifestations, but there are no specific diagnostic tests to differentiate them. We used a proteomic approach to discover novel diagnostic biomarkers specific to intestinal BD. Colon mucosa tissue samples were obtained from patients with intestinal BD or CD using colonoscopy-guided biopsy of the affected bowel. Peptides from seven intestinal BD and seven CD patients were extracted and labeled using tandem mass tag (TMT) reagents. The labeled peptides were identified and quantified using liquid chromatography-tandem mass spectrometry (LC-MS/MS)...
May 26, 2021: Scientific Reports
https://read.qxmd.com/read/33749693/evaluating-quality-in-acute-care-using-patient-reported-outcome-measures-a-scoping-review
#32
REVIEW
E M Mols, Mgam van der Velde, Pwb Nanayakkara, H R Haak, Mnt Kremers
The aim of this scoping review is to identify patient reported outcome measures (PROMs) in acute care settings, assess their psychometric properties and provide recommendations for their use in daily practice. We performed a search in the PubMed database to identify publications concerning PROMs in an acute care setting. The COSMIN checklist was used to assess the psychometric properties of the reported PROMs. We found 1407 publications and included 14 articles, describing 15 measures. Most publications provided limited information on psychometric properties...
2021: Acute Medicine
https://read.qxmd.com/read/33719356/a-fractional-order-epidemic-model-for-the-simulation-of-outbreaks-of-ebola
#33
JOURNAL ARTICLE
Weiqiu Pan, Tianzeng Li, Safdar Ali
The Ebola outbreak in 2014 caused many infections and deaths. Some literature works have proposed some models to study Ebola virus, such as SIR, SIS, SEIR, etc. It is proved that the fractional order model can describe epidemic dynamics better than the integer order model. In this paper, we propose a fractional order Ebola system and analyze the nonnegative solution, the basic reproduction number <mml:math xmlns:mml="https://www.w3.org/1998/Math/MathML"><mml:msub><mml:mi>R</mml:mi> <mml:mn>0</mml:mn></mml:msub> </mml:math> , and the stabilities of equilibrium points for the system firstly...
2021: Advances in Difference Equations
https://read.qxmd.com/read/33444720/network-pharmacology-combined-with-metabolomics-to-study-the-mechanism-of-shenyan-kangfu-tablets-in-the-treatment-of-diabetic-nephropathy
#34
JOURNAL ARTICLE
Xiaoli Wang, Qiaoyu He, Qian Chen, Beibei Xue, Jia Wang, Tao Wang, Hong Liu, Xiaopeng Chen
ETHNOPHARMACOLOGICAL RELEVANCE: Shenyan Kangfu Tablets (SYKFT) is a traditional prescription evolved from Shenqi Pills. It has been included in the Synopsis of the Golden Chamber for more than 2000 years. SYKFT was listed as a national Chinese medicine protected class by the China Food and Drug Administration. Diabetic nephropathy (DN) is one of the serious microvascular diseases caused by diabetes and is also one of the important factors leading to the death of patients. The pathogenesis of DN is diverse and complex, and there is no particularly effective drug treatment...
April 24, 2021: Journal of Ethnopharmacology
https://read.qxmd.com/read/33276129/adaptation-of-intestinal-epithelial-hydrolysis-and-absorption-of-dietary-carbohydrate-and-protein-in-mammals-and-birds
#35
REVIEW
William H Karasov, Enrique Caviedes-Vidal
The small intestine of mammals and birds exhibits fascinating variation across taxa, body size, and life history features such as locomotion and diet. In the intestine's brush border membrane (BBM), hydrolases are more abundant than transporters in both mammals and birds, but there are differences among the groups in abundance of certain hydrolases and possibly in transporters. For example, mammals express two α-glucosidases, sucrase-isomaltase (SI) and maltase glucoamylase (MGAM), whereas songbirds we studied have only SI, and the chicken expresses SI plus another α-glucosidase that functions similarly to MGAM but is not a true ortholog...
March 2021: Comparative Biochemistry and Physiology. Part A, Molecular & Integrative Physiology
https://read.qxmd.com/read/32922663/urinary-glycoproteomic-profiling-of-non-muscle-invasive-and-muscle-invasive-bladder-carcinoma-patients-reveals-distinct-n-glycosylation-pattern-of-cd44-mgam-and-ginm1
#36
JOURNAL ARTICLE
Gajanan Sathe, Irene A George, Barnali Deb, Ankit P Jain, Krishna Patel, Brusabhanu Nayak, Subhradip Karmakar, Amlesh Seth, Akhilesh Pandey, Prashant Kumar
Clinical management of bladder carcinomas (BC) remains a major challenge and demands comprehensive multi-omics analysis for better stratification of the disease. Identification of patients on risk requires identification of signatures predicting prognosis risk of the patients. Understanding the molecular alterations associated with the disease onset and progression could improve the routinely used diagnostic and therapy procedures. In this study, we investigated the aberrant changes in N-glycosylation pattern of proteins associated with tumorigenesis as well as disease progression in bladder cancer...
August 25, 2020: Oncotarget
https://read.qxmd.com/read/32914205/study-on-the-mechanisms-of-banxia-xiexin-decoction-in-treating-diabetic-gastroparesis-based-on-network-pharmacology
#37
JOURNAL ARTICLE
Tingchao Wu, Rensong Yue, Liang Li, Mingmin He
In China, Banxia Xiexin decoction (BXD) is applied to treat diabetic gastroparesis (DGP), but its key active ingredients and mechanisms against DGP are unclear. This study is designated to reveal the molecular mechanisms of BXD in treating DGP by adopting a creative approach known as network pharmacology to explore the active ingredients and therapeutic targets of BXD. In our study, 730 differentially expressed genes of DGP were obtained, and 30 potential targets of BXD against DGP were screened out (including ADRB2, DRD1, FOS, MMP9, FOSL1, FOSL2, JUN, MAP2, DRD2, MYC, F3, CDKN1A, IL6, NFKBIA, ICAM1, CCL2, SELE, DUOX2, MGAM, THBD, SERPINE1, ALOX5, CXCL11, CXCL2, CXCL10, RUNX2, CD40LG, C1QB, MCL1, and ADCYAP1)...
September 10, 2020: Interdisciplinary Sciences, Computational Life Sciences
https://read.qxmd.com/read/32806121/dietary-5-6-7-trihydroxy-flavonoid-aglycones-and-1-deoxynojirimycin-synergistically-inhibit-the-recombinant-maltase-glucoamylase-subunit-of-%C3%AE-glucosidase-and-lower-postprandial-blood-glucose
#38
JOURNAL ARTICLE
Yue-Sheng Dong, Na Yu, Xia Li, Bowei Zhang, Yan Xing, Chunlin Zhuang, Zhi-Long Xiu
1-Deoxynojirimycin (1-DNJ) is the major effective component of mulberry leaves, exhibiting inhibitory activity against α-glucosidase. However, due to the low content of 1-DNJ in mulberry products, its level cannot meet the lowest dose to exhibit its activity. In this study, a combination of dietary 5,6,7-trihydroxy-flavonoid aglycones with 1-DNJ showed synergistic inhibitory activity against maltase of mice α-glucosidase and recombinant C- and N-termini of maltase-glucoamylase (MGAM) and baicalein with 1-DNJ exhibited the strongest synergistic effect...
August 19, 2020: Journal of Agricultural and Food Chemistry
https://read.qxmd.com/read/32599415/conditioning-with-slowly-digestible-starch-diets-in-mice-reduces-jejunal-%C3%AE-glucosidase-activity-and-glucogenesis-from-a-digestible-starch-feeding
#39
JOURNAL ARTICLE
Like Y Hasek, Stephen E Avery, Shaji K Chacko, J Kenneth Fraley, Firoz A Vohra, Roberto Quezada-Calvillo, Buford L Nichols, Bruce R Hamaker
OBJECTIVES: Maltase-glucoamylase (Mgam) and sucrase-isomaltase (Si) are mucosal α-glucosidases required for the digestion of starch to glucose. We hypothesized that a dietary approach to reduce Mgam and Si activities can reduce glucose generation and absorption, and improve glucose control. METHODS: Rice starch was entrapped in alginate microspheres to moderate in vitro digestion properties. Three groups of 8-wk old mice (n = 8) were conditioned for 7 d with low 13 C-starch-based materials differing in digestion rates (fast, slow, and slower), and then given a digestible 13 C-labeled cornstarch test feeding to determine its digestion to glucose...
May 15, 2020: Nutrition
https://read.qxmd.com/read/32389078/multi-term-time-fractional-diffusion-equations-and-novel-parameter-estimation-techniques-for-chloride-ions-sub-diffusion-in-reinforced-concrete
#40
JOURNAL ARTICLE
Ruige Chen, Xiaoli Wei, Fawang Liu, Vo V Anh
In this paper, searching for a better chloride ions sub-diffusion system, a multi-term time-fractional derivative diffusion model is proposed for the description of the time-dependent chloride ions penetration in reinforced concrete structures exposed to chloride environments. We prove the stability and convergence of the model. We use the modified grid approximation method (MGAM) to estimate the fractional orders and chloride ions diffusion coefficients in the reinforced concrete for the multi-term time fractional diffusion system...
May 29, 2020: Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences
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