keyword
https://read.qxmd.com/read/37173651/integration-of-atac-seq-and-rna-seq-reveals-fosl2-drives-human-liver-progenitor-like-cell-aging-by-regulating-inflammatory-factors
#21
JOURNAL ARTICLE
Min Ding, Weijian Huang, Guifen Liu, Bo Zhai, Hexin Yan, Yong Zhang
BACKGROUND: Human primary hepatocytes (PHCs) are considered to be the best cell source for cell-based therapies for the treatment of end-stage liver disease and acute liver failure. To obtain sufficient and high-quality functional human hepatocytes, we have established a strategy to dedifferentiate human PHCs into expandable hepatocyte-derived liver progenitor-like cells (HepLPCs) through in vitro chemical reprogramming. However, the reduced proliferative capacity of HepLPCs after long-term culture still limits their utility...
May 13, 2023: BMC Genomics
https://read.qxmd.com/read/37042252/targeting-wnt-%C3%A3-catenin-fosl-signaling-ameliorates-right-ventricular-remodeling
#22
JOURNAL ARTICLE
Sreenath Reddy Nayakanti, Aleksandra Friedrich, Poonam Sarode, Leili Jafari, Giovanni Maroli, Mario Boehm, Alice Bourgeois, Yann Grobs, Fatemeh Khassafi, Carsten Kuenne, Stefan Guenther, Swati Dabral, Jochen Wilhelm, Astrid Weiss, Astrid Wietelmann, Baktybek Kojonazarov, Wiebke Janssen, Mario Looso, Frances de Man, Steeve Provencher, Khodr Tello, Werner Seeger, Sebastien Bonnet, Rajkumar Savai, Ralph T Schermuly, Soni Savai Pullamsetti
BACKGROUND: The ability of the right ventricle (RV) to adapt to an increased pressure afterload determines survival in patients with pulmonary arterial hypertension. At present, there are no specific treatments available to prevent RV failure, except for heart/lung transplantation. The wingless/int-1 (Wnt) signaling pathway plays an important role in the development of the RV and may also be implicated in adult cardiac remodeling. METHODS: Molecular, biochemical, and pharmacological approaches were used both in vitro and in vivo to investigate the role of Wnt signaling in RV remodeling...
April 12, 2023: Circulation Research
https://read.qxmd.com/read/36997107/fosl2-promotes-intertumoral-infiltration-of-t-cells-and-increases-pathological-complete-response-rates-in-locally-advanced-rectal-cancer-patients
#23
JOURNAL ARTICLE
Kailun Xu, Xiaoyang Yin, Biting Zhou, Xi Zheng, Hao Wang, Jing Chen, Xue Cai, Huanhuan Gao, Xiaoming Xu, Liuhong Wang, Li Shen, Tiannan Guo, Shu Zheng, Baosheng Li, Yingkuan Shao, Jian Wang
The outcome of neoadjuvant chemoradiotherapy (nCRT) remains highly unpredictable for individuals with locally advanced rectal cancer (LARC). We set out to characterize effective biomarkers that promote a pathological complete response (pCR). We quantified the abundances of 6483 high-confidence proteins in pre-nCRT biopsies of 58 LARC patients from two hospitals with pressure cycling technology (PCT)-assisted pulse data-independent acquisition (PulseDIA) mass spectrometry. Compared with non-pCR patients, pCR patients achieved long-term disease-free survival (DFS) and had higher tumor immune infiltration, especially CD8+ T cell infiltration, before nCRT...
March 28, 2023: Cancer Letters
https://read.qxmd.com/read/36967990/golph3-modulates-expression-and-alternative-splicing-of-transcription-factors-associated-with-endometrial-decidualization-in-human-endometrial-stromal-cells
#24
JOURNAL ARTICLE
Suqin Zhu, Dianliang Lin, Zhoujie Ye, Xiaojing Chen, Wenwen Jiang, Huiling Xu, Song Quan, Beihong Zheng
Endometrial decidualization is a decidual tissue formed by the proliferation and re-differentiation of endometrial stroma stimulated by decidualization inducing factors. It is very important for the proper maintenance of pregnancy. Previous studies speculated that Golgi phosphoprotein 3 (GOLPH3) may have a regulatory role in the process of endometrial decidualization, while the specific molecular mechanisms of GOLPH3 is unclear. In this part, GOLPH3 was silenced in human endometrial stromal cells (hESCs), and the transcriptome data (RNA-seq) by GOLPH3 knockdown (siGOLPH3) was obtained by high-throughput sequencing technology so as to analyze the potential targets of GOLPH3 at expression and alternative splicing levels in hESCs...
2023: PeerJ
https://read.qxmd.com/read/36948142/integrated-analysis-of-metabolomic-and-transcriptomic-profiling-reveals-the-effect-of-buyang-huanwu-decoction-on-parkinson-s-disease-in-mice
#25
JOURNAL ARTICLE
Jianran Hu, Ping Li, Hongyan Han, Pengyu Ji, Xin Zhao, Zhuoyu Li
BACKGROUND: Parkinson's disease (PD) is a common, complex, and chronic neurodegenerative disorder involved in multi-system. At present, medicine for PD has many limitations. Buyang Huanwu decoction (BHD), a famous traditional Chinese medicinal (TCM) formulae, is used in the treatment of PD clinically in China. However, the therapeutic mechanism is still unknown. PURPOSE: We aimed to explore the pharmacological mechanism of BHD alleviating PD through an integrated liver metabolome and brain transcriptome analysis...
March 13, 2023: Phytomedicine
https://read.qxmd.com/read/36932385/sox2-dosage-sustains-tumor-promoting-inflammation-to-drive-disease-aggressiveness-by-modulating-the-fosl2-il6-axis
#26
JOURNAL ARTICLE
Abdel Jelil Njouendou, Tibor Szarvas, Arnol Auvaker Zebaze Tiofack, Rovaldo Nguims Kenfack, Pamela Derliche Tonouo, Sidonie Noa Ananga, Esther H M Dina Bell, Gustave Simo, Jörg D Hoheisel, Jens T Siveke, Smiths S Lueong
BACKGROUND: Inflammation is undoubtedly a hallmark of cancer development. Its maintenance within tumors and the consequences on disease aggressiveness are insufficiently understood. METHODS: Data of 27 tumor entities (about 5000 samples) were downloaded from the TCGA and GEO databases. Multi-omic analyses were performed on these and in-house data to investigate molecular determinants of tumor aggressiveness. Using molecular loss-of-function data, the mechanistic underpinnings of inflammation-induced tumor aggressiveness were addressed...
March 17, 2023: Molecular Cancer
https://read.qxmd.com/read/36920708/circ_0005615-regulates-the-progression-of-colorectal-cancer-through-the-mir-873-5p-fosl2-signaling-pathway
#27
JOURNAL ARTICLE
Lihua Yu, Feifei Zhang, Yeli Wang
To determine the effects of circ_0005615 in CRC development and underneath mechanism. The expression levels of circ_0005615, microRNA-873-5p (miR-873-5p) and FOS-like antigen 2 (FOSL2) mRNA were determined by quantitative real-time polymerase chain reaction (qRT-PCR). The protein levels of exosome makers, proliferation-related makers and FOSL2 were detected by western blot or immunohistochemistry assay. Cell proliferation was evaluated by cell counting kit-8 (CCK-8) and cell colony formation assays. Cell migration and invasion were demonstrated by a transwell assay...
March 15, 2023: Biochemical Genetics
https://read.qxmd.com/read/36873932/bioinformatics-analysis-of-the-common-targets-of-mir-223-3p-mir-122-5p-and-mir-93-5p-in-polycystic-ovarian-syndrome
#28
JOURNAL ARTICLE
Liping Zou, Qiwen Feng, Wei Xia, Changhong Zhu
Polycystic ovarian syndrome (PCOS) is one of the most common gynecological endocrine disorders. MicroRNAs (miRNAs) play extensive roles in the pathogenesis of PCOS and can serve as potential diagnostic markers. However, most studies focused on the regulatory mechanisms of individual miRNAs, and the combined regulatory effects of multiple miRNAs remain unclear. The aim of this study was to identify the common targets of miR-223-3p, miR-122-5p, and miR-93-5p; and assess the transcript levels of some of these targets in PCOS rat ovaries...
2023: Frontiers in Genetics
https://read.qxmd.com/read/36850002/regulatory-networks-driving-expression-of-genes-critical-for-glioblastoma-are-controlled-by-the-transcription-factor-c-jun-and-the-pre-existing-epigenetic-modifications
#29
JOURNAL ARTICLE
Adria-Jaume Roura, Paulina Szadkowska, Katarzyna Poleszak, Michal J Dabrowski, Aleksandra Ellert-Miklaszewska, Kamil Wojnicki, Iwona A Ciechomska, Karolina Stepniak, Bozena Kaminska, Bartosz Wojtas
BACKGROUND: Glioblastoma (GBM, WHO grade IV) is an aggressive, primary brain tumor. Despite extensive tumor resection followed by radio- and chemotherapy, life expectancy of GBM patients did not improve over decades. Several studies reported transcription deregulation in GBMs, but regulatory mechanisms driving overexpression of GBM-specific genes remain largely unknown. Transcription in open chromatin regions is directed by transcription factors (TFs) that bind to specific motifs, recruit co-activators/repressors and the transcriptional machinery...
February 27, 2023: Clinical Epigenetics
https://read.qxmd.com/read/36845391/identification-and-validation-of-hub-genes-and-potential-drugs-involved-in-osteoarthritis-through-bioinformatics-analysis
#30
JOURNAL ARTICLE
Wenbo Xu, Xuyao Wang, Donghui Liu, Xin Lin, Bo Wang, Chunyang Xi, Pengyu Kong, Jinglong Yan
Purpose: Osteoarthritis (OA) is a common degenerative disease, which still lacks specific therapeutic drugs. Synovitis is one of the most important pathological process in OA. Therefore, we aim to identify and analyze the hub genes and their related networks of OA synovium with bioinformatics tools to provide theoretical basis for potential drugs. Materials and methods: Two datasets were obtained from GEO. DEGs and hub genes of OA synovial tissue were screened through Gene Ontology (GO) annotation, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment as well as protein-protein interaction (PPI) network analysis...
2023: Frontiers in Genetics
https://read.qxmd.com/read/36793138/regulon-active-landscape-reveals-cell-development-and-functional-state-changes-of-human-primary-osteoblasts-in-vivo
#31
JOURNAL ARTICLE
Shengran Wang, Yun Gong, Zun Wang, Xianghe Meng, Zhe Luo, Christopher J Papasian, Jonathan Greenbaum, Yisu Li, Qilan Liang, Yiping Chen, Xiaohua Li, Qiu Xiang, Hiuxi Zhang, Ying Liu, Liang Cheng, Yihe Hu, Lijun Tan, Hui Shen, Hongmei Xiao, Hongwen Deng
BACKGROUND: While transcription factor (TF) regulation is known to play an important role in osteoblast development, differentiation, and bone metabolism, the molecular features of TFs in human osteoblasts at the single-cell resolution level have not yet been characterized. Here, we identified modules (regulons) of co-regulated genes by applying single-cell regulatory network inference and clustering to the single-cell RNA sequencing profiles of human osteoblasts. We also performed cell-specific network (CSN) analysis, reconstructed regulon activity-based osteoblast development trajectories, and validated the functions of important regulons both in vivo and in vitro...
February 15, 2023: Human Genomics
https://read.qxmd.com/read/36736275/identification-of-key-genes-involved-in-neural-regeneration-and-the-repairing-effect-of-bdnf-overexpressed-bmscs-on-spinal-cord-ischemia-reperfusion-injury-in-rats
#32
JOURNAL ARTICLE
Fei Yin, Zhiming Liu, Ding Zhang, Zhubin Shen, Zefeng Niu, Li Guo
Bone marrow mesenchymal stem cells (BMSCs) can repair spinal cord ischemia-reperfusion injury (SCII); however, only a few BMSCs are usually located in the injured spinal cord. Since the brain-derived neurotrophic factor (BDNF) can promote neural development and maturation, we hypothesised that BDNF-overexpressed BMSCs can ameliorate SCII more effectively than BMSCs alone. To determine the effect of BDNF overexpression on SCII repair, BDNF-overexpressed BMSCs and BMSCs were transplanted into SCII rats. Our results revealed that BDNF-overexpressed BMSCs can better promote the recovery of damaged spinal cords than BMSCs alone...
February 1, 2023: Biomedicine & Pharmacotherapy
https://read.qxmd.com/read/36585863/verteporfin-loaded-microparticles-for-radiosensitization-of-preclinical-lung-and-breast-metastatic-spine-cancer
#33
JOURNAL ARTICLE
Oluwaseun O Akinduro, Paola Suarez-Meade, McKinley Roberts, Stephany Y Tzeng, Rachel Sarabia-Estrada, Paula Schiapparelli, Emily S Norton, Ziya L Gokaslan, Panos Z Anastasiadis, Hugo Guerrero-Cázares, Jordan J Green, Alfredo Quiñones-Hinojosa
OBJECTIVE: The vertebral column is the most common site for skeletal metastasis, often leading to debilitating pain and weakness. Metastatic cancer has unique genetic drivers that potentiate tumorigenicity. There is an unmet need for novel targeted therapy in patients with spinal metastatic disease. METHODS: The authors assessed the effect of verteporfin-induced yes-associated protein (YAP) inhibition on spine metastatic cell tumorigenicity and radiation sensitivity in vitro...
December 30, 2022: Journal of Neurosurgery. Spine
https://read.qxmd.com/read/36468795/the-transcription-factors-junb-and-fosl2-cooperate-to-regulate-cdh3-expression-in-15p-1-sertoli-cells
#34
JOURNAL ARTICLE
Ha T Nguyen, Luc J Martin
In Sertoli cells of the testis, cadherins (Cdh) are important cell-to-cell interaction proteins and contribute to the formation of the blood-testis barrier being essential for germ cells' protection. P-cadherin or Cdh3 is only expressed in Sertoli cells from embryonic to prepubertal development. Interestingly, the expression profile of Cdh3 correlates with that of activating protein-1 (AP-1) transcription factors during Sertoli cells development. To assess their potential implications in the regulation of Cdh3, different AP-1 transcription factors were overexpressed in 15P-1 Sertoli cells...
December 5, 2022: Molecular Reproduction and Development
https://read.qxmd.com/read/36459007/screening-and-validation-for-core-genes-in-osteoarthritic-cartilage-based-on-weighted-gene-co-expression-network-analysis
#35
JOURNAL ARTICLE
S-Q Wang, W-P Xie, L Yue, Y-L Cai
OBJECTIVE: Osteoarthritis (OA) has the highest disability rate among chronic diseases. The burden on patients and public health care resources is increasingly evident due to increasing obesity rates and aging populations. So, there is still a lack of early diagnosis and treatment for OA. MATERIALS AND METHODS: A total of three OA cartilage tissue datasets (GSE1919, GSE32317, and GSE5235) were obtained from the Gene Expression Omnibus (GEO) database. Screening of differentially expressed genes and WGCNA of overlapping genes were performed using the R language package...
November 2022: European Review for Medical and Pharmacological Sciences
https://read.qxmd.com/read/36408934/dna-methylation-landscape-of-tumor-associated-macrophages-reveals-pathways-transcription-factors-and-prognostic-value-relevant-to-triple-negative-breast-cancer-patients
#36
JOURNAL ARTICLE
Joschka Hey, Coral Halperin, Mark Hartmann, Shimrit Mayer, Maximilian Schönung, Daniel B Lipka, Ruth Scherz-Shouval, Christoph Plass
The accumulation of myeloid cells, particularly tumor-associated macrophages (TAMs), characterizes the tumor microenvironment (TME) of many solid cancers, including breast cancer. Compared to healthy tissue-resident macrophages, TAMs acquire distinct transcriptomes and tumor-promoting functions by largely unknown mechanisms. Here, we hypothesize the involvement of TME signaling and subsequent epigenetic reprogramming of TAMs. Using the 4T1 mouse model of triple-negative breast cancer, we demonstrate that the presence of cancer cells significantly alters the DNA methylation landscape of macrophages and, to a lesser extent, bone marrow-derived monocytes (BMDMs)...
November 21, 2022: International Journal of Cancer. Journal International du Cancer
https://read.qxmd.com/read/36238290/identifying-hub-circadian-rhythm-biomarkers-and-immune-cell-infiltration-in-rheumatoid-arthritis
#37
JOURNAL ARTICLE
Pengfei Wen, Tao Ma, Binfei Zhang, Linjie Hao, Yakang Wang, Jianbin Guo, Wei Song, Jun Wang, Yumin Zhang
Background: Rheumatoid arthritis (RA) is a chronic systemic autoimmune disease with symptoms characterized by typical circadian rhythmic changes. This study aimed to identify the hub circadian rhythm genes (CRGs) in RA and explore their association with immune cell infiltration and pathogenesis of RA. Methods: The differentially expressed CRGs (DECRGs) between RA and normal control samples were screened from Datasets GSE12021 and GSE55235. Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Gene Set Enrichment Analysis were used to explore the potential functional mechanisms of DECRGs in RA...
2022: Frontiers in Immunology
https://read.qxmd.com/read/36197437/fosl2-truncating-variants-in-the-last-exon-cause-a-neurodevelopmental-disorder-with-scalp-and-enamel-defects
#38
JOURNAL ARTICLE
Auriane Cospain, Ana Rivera-Barahona, Erwan Dumontet, Blanca Gener, Isabelle Bailleul-Forestier, Isabelle Meyts, Guillaume Jouret, Bertrand Isidor, Carole Brewer, Wim Wuyts, Leen Moens, Selket Delafontaine, Wayne Wing Keung Lam, Kris Van Den Bogaert, Anneleen Boogaerts, Emmanuel Scalais, Thomas Besnard, Benjamin Cogne, Christophe Guissard, Paul Rollier, Wilfrid Carre, Regis Bouvet, Karin Tarte, Ricardo Gómez-Carmona, Pablo Lapunzina, Sylvie Odent, Marie Faoucher, Christele Dubourg, Víctor L Ruiz-Pérez, Koen Devriendt, Laurent Pasquier, Luis A Pérez-Jurado
PURPOSE: We aimed to investigate the molecular basis of a novel recognizable neurodevelopmental syndrome with scalp and enamel anomalies caused by truncating variants in the last exon of the gene FOSL2, encoding a subunit of the AP-1 complex. METHODS: Exome sequencing was used to identify genetic variants in all cases, recruited through Matchmaker exchange. Gene expression in blood was analyzed using reverse transcription polymerase chain reaction. In vitro coimmunoprecipitation and proteasome inhibition assays in transfected HEK293 cells were performed to explore protein and AP-1 complex stability...
December 2022: Genetics in Medicine: Official Journal of the American College of Medical Genetics
https://read.qxmd.com/read/36168614/erratum-fosl2-promotes-vegf-independent-angiogenesis-by-transcriptionnally-activating-wnt5a-in-breast-cancer-associated-fibroblasts-erratum
#39
Xueying Wan, Shengdong Guan, Yixuan Hou, Yilu Qin, Huan Zeng, Liping Yang, Yina Qiao, Shuiqing Liu, Qiao Li, Ting Jin, Yuxiang Qiu, Manran Liu
[This corrects the article DOI: 10.7150/thno.55074.].
2022: Theranostics
https://read.qxmd.com/read/36122307/natural-coevolution-of-tumor-and-immunoenvironment-in-glioblastoma
#40
JOURNAL ARTICLE
Lingxiang Wu, Wei Wu, Junxia Zhang, Zheng Zhao, Liangyu Li, Mengyan Zhu, Min Wu, Fan Wu, Fengqi Zhou, Yuxin Du, Rui-Chao Chai, Wei Zhang, Xiaoguang Qiu, Quanzhong Liu, Ziyu Wang, Jie Li, Kening Li, Apeng Chen, Yinan Jiang, Xiangwei Xiao, Han Zou, Rashmi Srivastava, Tingting Zhang, Yun Cai, Yuan Liang, Bin Huang, Ruohan Zhang, Fan Lin, Lang Hu, Xiuxing Wang, Xu Qian, Sali Lv, Baoli Hu, Siyuan Zheng, Zhibin Hu, Hongbing Shen, Yongping You, Roel Gw Verhaak, Tao Jiang, Qianghu Wang
IDH wild-type glioblastoma (GBM) has a dismal prognosis. A better understanding of tumor evolution holds the key to developing more effective treatment. Here we study glioblastoma's natural evolutionary trajectory by using rare, multifocal samples. We sequenced 61,062 single cells from eight multifocal IDH wild-type primary GBMs and defined a natural evolution signature (NES) of the tumor. We show that the NES significantly associates with the activation of transcription factors that regulate brain development, including MYBL2 and FOSL2...
September 19, 2022: Cancer Discovery
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