keyword
https://read.qxmd.com/read/38632081/peptide-set-test-a-peptide-centric-strategy-to-infer-differentially-expressed-proteins
#1
JOURNAL ARTICLE
Junmin Wang, Steven Novick
MOTIVATION: The clinical translation of mass spectrometry-based proteomics has been challenging due to limited statistical power caused by large technical variability and inter-patient heterogeneity. Bottom-up proteomics provides an indirect measurement of proteins through digested peptides. This raises the question whether peptide measurements can be used directly to better distinguish differentially expressed proteins. RESULTS: We present a novel method called the peptide set test, which detects coordinated changes in the expression of peptides originating from the same protein and compares them to the rest of the peptidome...
April 17, 2024: Bioinformatics
https://read.qxmd.com/read/38623430/protective-effect-of-mixture-of-acanthopanax-sessiliflorum-and-chaenomeles-sinensis-against-ultraviolet-b-induced-photodamage-in-human-fibroblast-and-hairless-mouse
#2
JOURNAL ARTICLE
Jin-Ok Kim, Gami An, Jung-Hye Choi
UNLABELLED: Skin photoaging, characterized by collagen degradation and upregulation of matrix metalloproteinases (MMPs), is a major concern caused by UVB irradiation. In this study, we investigated the potential of Acanthopanax sessiliflorum extract (ASE) and Chaenomeles sinensis (CSE) extracts to mitigate the effects of UVB-induced photodamage in human fibroblast and hairless mice. Water extracts of AS (ASE) and CS (CSE) were found to inhibit the expression of MMP-1/-3 in vitro. Furthermore, the extract of mixture of AS and CS (ACE) showed more potent inhibitor effect, as compared to ASE and CSE...
June 2024: Food Science and Biotechnology
https://read.qxmd.com/read/38518511/mechanical-insights-into-jawbone-characteristics-under-chronic-kidney-disease-a-comprehensive-nanoindentation-approach
#3
JOURNAL ARTICLE
Chie Watanabe, Jingxiao Zhong, Sotaro Yamashita, Yusuke Kondo, Chihiro Masaki, Ryuji Hosokawa, Yo Shibata
The mechanical properties of the jawbone play a critical role in determining the successful integration of dental prostheses. Chronic kidney disease (CKD) has been identified to abnormally accelerate bone turnover rates. However, the impact of CKD on the mechanical characteristics of the jawbone has not been extensively studied. This study sought to evaluate the time-dependent viscoelastic behaviors of rat jawbones, particularly in the scenarios both with and without CKD. We hypothesized that CKD might compromise the bone's innate toughening mechanisms, potentially owing to the time-dependent viscoelasticity of the bone matrix proteins...
March 12, 2024: Journal of the Mechanical Behavior of Biomedical Materials
https://read.qxmd.com/read/38464615/protective-effect-of-pterospermum-rubiginosum-bark-extract-on-bone-mineral-density-and-bone-remodelling-in-estrogen-deficient-ovariectomized-sprague-dawley-sd-rats
#4
JOURNAL ARTICLE
Rajamohanan Jalaja Anish, Biji Mohanan, Aswathy Nair, K V Radhakrishnan, Arun A Rauf
UNLABELLED: Osteoporosis is a common metabolic old age disorder characterised by low bone mass content (BMC) and mineral density (BMD) with micro-architectural deterioration of the extracellular matrix, further increasing bone fragility risk. Several traditional remedies, including plant extracts and herbal formulations, are used worldwide by local healers to improve the overall bone health and metabolism as an excellent osteoregenerative agent. Pteropsermum rubiginosum  is an underexplored medicinal plant used by tribal peoples of Western Ghats, India, to treat bone fractures and associated inflammation...
April 2024: 3 Biotech
https://read.qxmd.com/read/38435796/influence-of-hematocrit-level-and-integrin-%C3%AE-iib-%C3%AE-iii-function-on-vwf-mediated-platelet-adhesion-and-shear-induced-platelet-aggregation-in-a-sudden-expansion
#5
JOURNAL ARTICLE
Connor T Watson, Shane C Ward, Stefano A Rizzo, Alberto Redaelli, Keefe B Manning
PURPOSE: Shear-mediated thrombosis is a clinically relevant phenomenon that underlies excessive arterial thrombosis and device-induced thrombosis. Red blood cells are known to mechanically contribute to physiological hemostasis through margination of platelets and vWF, facilitating the unfurling of vWF multimers, and increasing the fraction of thrombus-contacting platelets. Shear also plays a role in this phenomenon, increasing both the degree of margination and the near-wall forces experienced by vWF and platelets leading to unfurling and activation...
February 2024: Cellular and Molecular Bioengineering
https://read.qxmd.com/read/38435791/trisomy-21-alters-cell-proliferation-and-migration-of-ipsc-derived-cardiomyocytes-on-type-vi-collagen
#6
JOURNAL ARTICLE
Rachel S Reeser, Alyssa K Salazar, Kendra M Prutton, James R Roede, Mitchell C VeDepo, Jeffrey G Jacot
PURPOSE: Individuals with Down syndrome (DS) are 2000 times more likely to develop a congenital heart defect (CHD) than the typical population Freeman et al. in Am J Med Genet 80:213-217 (1998). The majority of CHDs in individuals with DS characteristically involve the atrioventricular (AV) canal, including the valves and the atrial or ventricular septum. Type VI collagen (COLVI) is the primary structural component in the developing septa and endocardial cushions, with two of the three genes encoding for COLVI located on human chromosome 21 and upregulated in Down syndrome (von Kaisenberg et al...
February 2024: Cellular and Molecular Bioengineering
https://read.qxmd.com/read/38426617/implantation-of-hucb-mscs-generates-greater-hyaline-type-cartilage-than-microdrilling-combined-with-high-tibial-osteotomy
#7
JOURNAL ARTICLE
Se-Han Jung, Hyunjin Park, Min Jung, Kwangho Chung, Sungjun Kim, Hyun-Soo Moon, Jisoo Park, Ju-Hyung Lee, Chong-Hyuk Choi, Sung-Hwan Kim
PURPOSE: To compare the outcomes of treating large cartilage defects in knee osteoarthritis using human allogeneic umbilical cord blood-derived mesenchymal stem cell (hUCB-MSC) implantation or arthroscopic microdrilling as a supplementary cartilage regenerative procedure combined with high tibial osteotomy (HTO). METHODS: This 1-year prospective comparative study included 25 patients with large, near full-thickness cartilage defects (International Cartilage Repair Society grade ≥ IIIB) in the medial femoral condyles and varus malalignment...
March 1, 2024: Knee Surgery, Sports Traumatology, Arthroscopy
https://read.qxmd.com/read/38371682/oral-administration-of-collagen-peptide-in-skh-1-mice-suppress-uvb-induced-wrinkle-and-dehydration-through-mapk-and-mapkk-signaling-pathways-in-vitro-and-in-vivo-evidence
#8
JOURNAL ARTICLE
Cheol Hyeon Cho, Wonchul Lim, Woo-Jin Sim, Tae-Gyu Lim
UNLABELLED: Skin aging is induced by exposure to extrinsic factors, causing various diseases and adversely affecting aesthetics. Studies have suggested that as the quality of life improves, demand for beauty and nutritional cosmetics increases. Here, the protective effects of collagen peptide against UV-induced skin damage were evaluated in vitro and in vivo. Collagen peptide inhibited water loss and UVB irradiation-induced HA degradation in the skin of SKH-1 mice. Additionally, collagen peptide dose-dependently inhibited UVB-induced wrinkle formation, epidermal thickness, and elastase activity...
March 2024: Food Science and Biotechnology
https://read.qxmd.com/read/38367466/pirfenidone-alleviates-chronic-pancreatitis-via-suppressing-the-activation-of-pancreatic-stellate-cells-and-the-m1-polarization-of-macrophages
#9
JOURNAL ARTICLE
Hong-Lei Guo, Xue-Song Liang, Xiang-Peng Zeng, Yu Liu, Zhao-Shen Li, Li-Juan Wang, Liang-Hao Hu
In the realm of fibroinflammatory conditions, chronic pancreatitis (CP) stands out as a particularly challenging ailment, lacking a dedicated, approved treatment. The potential of Pirfenidone (PFD), a drug originally used for treating idiopathic pulmonary fibrosis (IPF), in addressing CP's fibrotic aspects has sparked new interest. This investigation focused on the role of PFD in diminishing fibrosis and immune response in CP, using a mouse model induced by caerulein. The research extended to in vitro studies examining the influence of PFD on pancreatic stellate cells' (PSCs) behavior and the polarization of macrophages into M1 and M2 types...
February 16, 2024: International Immunopharmacology
https://read.qxmd.com/read/38333227/a-4d-printed-self-assembling-pegda-microscaffold-fabricated-by-digital-light-processing-for-arthroscopic-articular-cartilage-tissue-engineering
#10
JOURNAL ARTICLE
Yunjie Hao, Chuanyung Wu, Yuchuan Su, Jude Curran, James R Henstock, Fangang Tseng
UNLABELLED: Articular cartilage in synovial joints such as the knee has limited capability to regenerate independently, and most clinical options for focal cartilage repair merely delay total joint replacement. Tissue engineering presents a repair strategy in which an injectable cell-laden scaffold material is used to reconstruct the joint in situ through mechanical stabilisation and cell-mediated regeneration. In this study, we designed and 3D-printed millimetre-scale micro-patterned PEGDA biomaterial microscaffolds which self-assemble through tessellation at a scale relevant for applications in osteochondral cartilage reconstruction...
2024: Prog Addit Manuf
https://read.qxmd.com/read/38223667/phloretin-targets-sirt1-to-alleviate-oxidative-stress-apoptosis-and-inflammation-in-deep-venous-thrombosis
#11
JOURNAL ARTICLE
Xiaodong Wang, Jin Yan, Xiaolong Ni, Sipin Hu, Mingwan Zhang, Yin Ying
UNLABELLED: Deep vein thrombosis (DVT) is a type of venous thromboembolism posing a serious threat to health on a global scale. Phloretin is a potential natural product that has a variety of pharmacological activities. Besides, some Chinese medicines reported that deacetylase sirtuin (SIRT)1 treats DVT by anti-inflammatory and anti-platelet production. However, the specific binding targets and binding modes have not been elaborated. The present study was to investigate whether phloretin attenuates DVT in model rats and oxidized low‑density lipoprotein (ox‑LDL) induced human umbilical vein endothelial cells (HUVECs), and to explore its potential target...
January 2024: Toxicological Research
https://read.qxmd.com/read/38062726/low-expression-of-lipoic-acid-synthase-aggravates-silica-induced-pulmonary-fibrosis-by-inhibiting-the-differentiation-of-tregs-in-mice
#12
JOURNAL ARTICLE
Sensen Yan, Yingzheng Zhao, Jingyi Yan, Yabo Guan, Mengdi Lyv, Guangcui Xu, Xuesi Yang, Yichun Bai, Sanqiao Yao
AIMS: In addition to reducing the respiratory function, crystalline silica (SiO2 ) disturbs the immune response by affecting immune cells during the progression of silicosis. Treg differentiation may play a key role in the abnormal polarization of T helper cell (Th)1 and Th2 cells in the development of silicosis-induced fibrosis. Alpha lipoic acid (ALA) has immunomodulatory effects by promoting regulatory T cells (Tregs) differentiation. Thus, ALA may have a therapeutic potential for treating autoimmune disorders in patients with silicosis...
December 7, 2023: Antioxidants & Redox Signaling
https://read.qxmd.com/read/38045541/gene-duplication-and-functional-divergence-of-new-genes-contributed-to-the-polar-acclimation-of-antarctic-green-algae
#13
JOURNAL ARTICLE
Xiaowen Zhang, Wentao Han, Xiao Fan, Yitao Wang, Dong Xu, Ke Sun, Wei Wang, Yan Zhang, Jian Ma, Naihao Ye
UNLABELLED: Psychrophilic microalgae successfully survive in the extreme and highly variable polar ecosystems, which represent the energy base of most food webs and play a fundamental role in nutrient cycling. The success of microalgae is rooted in their adaptive evolution. Revealing how they have evolved to thrive in extreme polar environments will help us better understand the origin of life in polar ecosystems. We isolated a psychrophilic unicellular green alga, Microglena sp. YARC, from Antarctic sea ice which has a huge genome...
November 2023: Marine life science & technology
https://read.qxmd.com/read/37987026/effect-of-aqueous-extract-of-indigofera-tinctoria-linn-on-aging-induced-inflammation-and-its-associated-left-ventricular-hypertrophy-and-fibrosis-in-the-rat
#14
JOURNAL ARTICLE
Monisha Jayabalan, Suruthi Sankar, Muthukumar Govindan, Radhakrishnan Nagarathnam, Muhammed Ibrahim
The aim of the present study is to investigate the ameliorative potential of the aqueous extract of Indigofera tinctoria (IT) in aging-induced inflammation and its associated cardiac hypertrophy and fibrosis. Young (3-month-old) and aged (24-26-month-old) male Wistar albino rats were grouped into young control, aged control, aged + IT, and young + IT. The animals in the supplementary groups received 200 mg/kg BWT of aqueous extract of IT orally once a day for 21 days. Aged animals showed prolonged QT interval and increased weight and volume of the heart with a thickening ventricular wall...
December 2023: 3 Biotech
https://read.qxmd.com/read/37975135/transplantation-of-adipose-derived-stem-cells-in-diabetes-mellitus-limitations-and-achievements
#15
REVIEW
Raziye Tajali, Akram Eidi, Hosein Ahmadi Tafti, Abdolreza Pazouki, Tunku Kamarul, Ali Mohammad Sharifi
OBJECTIVES: Diabetes mellitus (DM) is a complex metabolic disease that results from impaired insulin secreting pancreatic β-cells or insulin resistance. Although available medications help control the disease, patients suffer from its complications. Therefore, finding effective therapeutic approaches to treat DM is a priority. Adipose Derived Stem Cells (ADSCs) based therapy is a promising strategy in various regenerative medicine applications, but its systematic translational use is still somewhat out of reach...
December 2023: Journal of Diabetes and Metabolic Disorders
https://read.qxmd.com/read/37872671/adipokines-enriched-adipose-extract-restores-skin-barrier-and-ameliorates-inflammatory-dysregulation-in-an-atopic-dermatitis-mouse-model
#16
JOURNAL ARTICLE
Jingyan Guan, Jingwei Feng, Mimi Xu, Meiqi Liu, Yunfan He, Feng Lu
BACKGROUND: Atopic dermatitis (AD) is a chronic dermatosis with high incidence worldwide characterized by skin barrier abnormalities and immune dysregulation. Conventional therapies are usually limited by side effects and high cost. Given the anti-inflammatory and repairing properties, adipokines are increasingly considered as promising therapeutic agents for dermatoses. Adipose collagen fragments (ACF), a novel adipokine-enriched product, may alleviate AD through modulating immune microenvironment and restoring skin barrier...
October 24, 2023: Plastic and Reconstructive Surgery
https://read.qxmd.com/read/37544940/egcg-attenuate-egf-triggered-matrix-abundance-and-migration-in-hpv-positive-and-hpv-negative-cervical-cancer-cells
#17
JOURNAL ARTICLE
Rajalakshmi Sabanayagam, Sneha Krishnamoorthy, Jayapradha Gnanagurusamy, Bharathi Muruganatham, Sridhar Muthusami
Our previous laboratory findings suggested the beneficial effects of epigallocatechin gallate (EGCG) against cervical cancer (CC) cells survival. The present study is aimed at identifying the effects of EGCG in preventing the actions of epidermal growth factor (EGF) in human papilloma virus (HPV) 68 positive ME180 and HPV negative C33A CC cells. An elevated level of EGF in tumor micro-environment (TME) is linked to the metastasis of several cancers including CC. We hypothesized that EGCG has the ability to block the actions of EGF...
August 7, 2023: Medical Oncology
https://read.qxmd.com/read/37466864/associations-between-collagen-x-biomarker-and-linear-growth-velocity-in-a-pediatric-chronic-kidney-disease-cohort
#18
JOURNAL ARTICLE
Denver D Brown, Jennifer Roem, Derek K Ng, Ryan F Coghlan, Brian Johnstone, William Horton, Susan L Furth, Bradley A Warady, Michal L Melamed, Andrew Dauber
BACKGROUND: Collagen X biomarker (CXM) is a novel biomarker of linear growth velocity. We investigated whether CXM correlated with measured growth velocity in children with impaired kidney function. METHODS: We used data from children aged 2 through 16 years old enrolled in the Chronic Kidney Disease in Children (CKiD) study. We assessed the association between CXM level and growth velocity based on height measurements obtained at study visits using linear regression models constructed separately by sex, with and without adjustment for CKD covariates...
July 19, 2023: Pediatric Nephrology
https://read.qxmd.com/read/37456784/tnf-%C3%AE-preconditioning-promotes-a-proangiogenic-phenotype-in-hipsc-derived-vascular-smooth-muscle-cells
#19
JOURNAL ARTICLE
Daniel C Sasson, Sara Islam, Kaiti Duan, Biraja C Dash, Henry C Hsia
INTRODUCTION: hiPSC-VSMCs have been suggested as therapeutic agents for wound healing and revascularization through the secretion of proangiogenic factors. However, methods of increasing cell paracrine secretion and survivability have thus far yielded inconsistent results. This study investigates the effect of pre-conditioning of hiPSC-VSMCs with TNF-α and their integration into 3D collagen scaffolds on cellular viability and secretome. METHODS: hiPSC-VSMCs were dual-plated in a 2D environment...
June 2023: Cellular and Molecular Bioengineering
https://read.qxmd.com/read/37243397/bioactive-impact-of-manuka-honey-and-bone-char-incorporated-into-gelatin-and-chitosan-cryogels-in-a-rat-calvarial-fracture-model
#20
JOURNAL ARTICLE
E M Robertson, K R Hixon, S H McBride-Gagyi, S A Sell
Bone tissue engineered scaffolds are designed to mimic the natural environment for regeneration when typical healing is inhibited. Autografts are the current gold standard for treatment but are limited by available bone and supplementary surgical sites that broaden complications and comorbidities. Cryogels are an ideal scaffold in bone regeneration due to their mechanical integrity and marcoporous structure that elicits angiogenesis and subsequently new bone tissue formation. To aid in bioactivity and osteoinductivity, manuka honey (MH) and bone char (BC) were added to gelatin and chitosan cryogels (CG)...
May 26, 2023: Journal of Biomedical Materials Research. Part B, Applied Biomaterials
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