keyword
https://read.qxmd.com/read/38598723/virtual-screening-of-a-chemically-diverse-superscaffold-library-enables-ligand-discovery-for-a-key-gpcr-target
#21
JOURNAL ARTICLE
Katharina Grotsch, Anastasiia V Sadybekov, Sydney Hiller, Saheem Zaidi, Dmitry Eremin, Austen Le, Yongfeng Liu, Evan Carlton Smith, Christos Illiopoulis-Tsoutsouvas, Joice Thomas, Shubhangi Aggarwal, Julie E Pickett, Cesar Reyes, Elias Picazo, Bryan L Roth, Alexandros Makriyannis, Vsevolod Katritch, Valery V Fokin
The advent of ultra-large libraries of drug-like compounds has significantly broadened the possibilities in structure-based virtual screening, accelerating the discovery and optimization of high-quality lead chemotypes for diverse clinical targets. Compared to traditional high-throughput screening, which is constrained to libraries of approximately one million compounds, the ultra-large virtual screening approach offers substantial advantages in both cost and time efficiency. By expanding the chemical space with compounds synthesized from easily accessible and reproducible reactions and utilizing a large, diverse set of building blocks, we can enhance both the diversity and quality of the discovered lead chemotypes...
April 10, 2024: ACS Chemical Biology
https://read.qxmd.com/read/38594748/a-phenotypic-screening-approach-to-target-p60amotl2-expressing-invasive-cancer-cells
#22
JOURNAL ARTICLE
Pedro Fonseca, Weiyingqi Cui, Nona Struyf, Le Tong, Ayushi Chaurasiya, Felipe Casagrande, Honglei Zhao, Dinura Fernando, Xinsong Chen, Nicholas P Tobin, Brinton Seashore-Ludlow, Andreas Lundqvist, Johan Hartman, Anita Göndör, Päivi Östling, Lars Holmgren
BACKGROUND: Tumor cells have the ability to invade and form small clusters that protrude into adjacent tissues, a phenomenon that is frequently observed at the periphery of a tumor as it expands into healthy tissues. The presence of these clusters is linked to poor prognosis and has proven challenging to treat using conventional therapies. We previously reported that p60AmotL2 expression is localized to invasive colon and breast cancer cells. In vitro, p60AmotL2 promotes epithelial cell invasion by negatively impacting E-cadherin/AmotL2-related mechanotransduction...
April 9, 2024: Journal of Experimental & Clinical Cancer Research: CR
https://read.qxmd.com/read/38594253/identification-of-small-molecules-affecting-the-interaction-between-human-hemoglobin-and-staphylococcus-aureus-isdb-hemophore
#23
JOURNAL ARTICLE
Monica Cozzi, Mariacristina Failla, Eleonora Gianquinto, Sandra Kovachka, Valeria Buoli Comani, Carlotta Compari, Omar De Bei, Roberta Giaccari, Francesco Marchesani, Marialaura Marchetti, Luca Ronda, Barbara Rolando, Massimo Baroni, Gabriele Cruciani, Barbara Campanini, Stefano Bettati, Serena Faggiano, Loretta Lazzarato, Francesca Spyrakis
Human hemoglobin (Hb) is the preferred iron source of Staphylococcus aureus. This pathogenic bacterium exploits a sophisticated protein machinery called Iron-regulated surface determinant (Isd) system to bind Hb, extract and internalize heme, and finally degrade it to complete iron acquisition. IsdB, the surface exposed Hb receptor, is a proven virulence factor of S. aureus and the inhibition of its interaction with Hb can be pursued as a strategy to develop new classes of antimicrobials. To identify small molecules able to disrupt IsdB:Hb protein-protein interactions (PPIs), we carried out a structure-based virtual screening campaign and developed an ad hoc immunoassay to screen the retrieved set of commercially available compounds...
April 9, 2024: Scientific Reports
https://read.qxmd.com/read/38593531/design-synthesis-in-silico-and-biological-evaluation-of-new-indole-based-oxadiazole-derivatives-targeting-estrogen-receptor-alpha
#24
JOURNAL ARTICLE
Kamalpreet Kaur, Harkomal Verma, Prabhakar Gangwar, Kailash Jangid, Monisha Dhiman, Vinod Kumar, Vikas Jaitak
A series of new indole-oxadiazole derivatives was designed and synthesized to develop potential anti-breast cancer agents. The compounds exhibited significant inhibitory activity with IC50 values ranging from 1.78 to 19.74 μM against ER-positive human breast cancer (BC) cell lines T-47D and MCF-7. Among them, compounds (5a, 5c, 5e-5h, 5j-5o) displayed superior activity against ER-α dominant (ratio of ER-α/ER-β is 9/1) T-47D cells compared to the standard drug bazedoxifene (IC50  = 12...
April 5, 2024: Bioorganic Chemistry
https://read.qxmd.com/read/38590677/molecular-docking-mm-gbsa-and-molecular-dynamics-approach-5-meo-dmt-analogues-as-potential-antidepressants
#25
JOURNAL ARTICLE
Rajagopal Kalirajan, Khare Rishabh, Jupudi Srikanth, Modi Niharika, Negi Preeya, Islam Rezaul
Since depression is a common mental illness affecting an estimated 5% of people worldwide, investigators are encouraged to develop effective antidepressants. According to the monoamine-deficiency hypothesis, the underlying pathophysiology of depression is a deficiency of some neurotransmitters (serotonin, norepinephrine, or dopamine) in the central nervous system. The neurotransmitter serotonin has drawn the most attention concerning depression. As per research, 5-methoxy-N, N-dimethyltryptamine (5-MeO-DMT) elevates inter-synaptic serotonin levels when administered as a single inhalation of vapor from dried toad secretion and leads to higher life satisfaction, convergent thinking, higher ratings of mindfulness, lower ratings of depression, and anxiety...
October 2023: Archives of Razi Institute
https://read.qxmd.com/read/38587493/understanding-the-effects-of-ligand-configuration-on-protoporphyrinogen-ix-oxidase-with-rationally-designed-3-n-phenyluracil-but-2-enoates
#26
JOURNAL ARTICLE
Huang-Ze Yang, Hong-Yun Liu, Sang-Hong Li, Da-Wei Wang, Zhen Xi
Protoporphyrinogen IX oxidase (PPO, EC 1.3.3.4) is a promising target for green herbicide discovery. However, the ligand configuration effects on PPO activity were still poorly understood. Herein, we designed 3-( N -phenyluracil)but-2-enoates using our previously developed active fragments exchange and link (AFEL) approach and synthesized a series of novel compounds with nanomolar ranges of Nicotiana tabacum PPO (NtPPO) inhibitory potency and promising herbicidal potency. Our systematic structure-activity relationship investigations showed that the E isomers of 3-( N -phenyluracil)but-2-enoates displayed improved bioactivity than their corresponding Z isomers...
April 8, 2024: Journal of Agricultural and Food Chemistry
https://read.qxmd.com/read/38587187/structure-based-design-and-synthesis-of-lipid-a-derivatives-to-modulate-cytokine-responses
#27
JOURNAL ARTICLE
Enrico C J M Verpalen, Arwin J Brouwer, Margreet A Wolfert, Geert-Jan Boons
Agonists of Toll like receptors (TLRs) have attracted interest as adjuvants and immune modulators. A crystal structure of TLR4/MD2 with E. coli LPS indicates that the fatty acid at C-2 of the lipid A component of LPS induces dimerization of two TLR4-MD2 complexes, which in turn initiates cell signaling leading to the production of (pro)inflammatory cytokines. To probe the importance of the (R)-3-hydroxymyristate at C-2 of lipid A, a range of bis- and mono-phosphoryl lipid A derivatives with different modifications at C-2 were prepared by a strategy in which 2-methylnaphthyl ethers were employed as permanent protecting group that could be readily removed by catalytic hydrogenation...
April 8, 2024: Chemistry: a European Journal
https://read.qxmd.com/read/38584562/exploring-type-ii-diabetes-inhibitors-from-genus-daphne-plant-species-an-integrated-computational-study
#28
JOURNAL ARTICLE
Hafiza Ayesha Nazir, Nusrat Shafiq, Simone Brogi, Zill-I-Huma Nazli, Jallat Khan, Maryam Rashid, Shagufta Parveen
BACKGROUND: Plant species of the genus Daphne clasps a historical background with a potential source of bioactive phytochemicals such as flavonoids and daphnodorins. These compounds manifest a significant chemotaxonomic value in drug discovery. Their flair comprehensive pharmacological, phytochemical, biological, catalytic, and clinical utilities make them exclusively unique. This study was conducted to investigate the optimization and structure-based virtual screening of these peculiar analogs...
April 3, 2024: Combinatorial Chemistry & High Throughput Screening
https://read.qxmd.com/read/38581019/mesenchymal-stromal-cell-chondrogenesis-under-alk1-2-3-specific-bmp-inhibition-a-revision-of-the-prohypertrophic-signalling-network-concept
#29
JOURNAL ARTICLE
Solvig Diederichs, Simon I Dreher, Sarah Anna Nüesch, Sven Schmidt, Christian Merle, Wiltrud Richter
BACKGROUND: In vitro chondrogenesis of mesenchymal stromal cells (MSCs) driven by the essential chondro-inducer transforming growth factor (TGF)-β is instable and yields undesired hypertrophic cartilage predisposed to bone formation in vivo. TGF-β can non-canonically activate bone morphogenetic protein-associated ALK1/2/3 receptors. These have been accused of driving hypertrophic MSC misdifferentiation, but data remained conflicting. We here tested the antihypertrophic capacity of two highly specific ALK1/2/3 inhibitors - compound A (CompA) and LDN-212854 (LDN21) - in order to reveal potential prohypertrophic contributions of these BMP/non-canonical TGF-β receptors during MSC in vitro chondrogenesis...
April 5, 2024: Stem Cell Research & Therapy
https://read.qxmd.com/read/38578235/collapse-of-late-endosomal-ph-elicits-a-rapid-rab7-response-via-v-atpase-and-rilp
#30
JOURNAL ARTICLE
R J Mulligan, M M Magaj, L Digilio, S Redemann, C C Yap, B Winckler
Endosomal-lysosomal trafficking is accompanied by the acidification of endosomal compartments by the H+-V-ATPase to reach low lysosomal pH. Disruption of proper pH impairs lysosomal function and the balance of protein synthesis and degradation (proteostasis). We used the small dipeptide LLOMe, which is known to permeabilize lysosomal membranes, and find that LLOMe also impacts late endosomes (LEs) by neutralizing their pH without causing membrane permeabilization. We show that LLOMe leads to hyper-activation of Rab7 and disruption of tubulation and mannose-6-phosphate receptor (CI-M6PR) recycling on pH-neutralized LEs...
April 5, 2024: Journal of Cell Science
https://read.qxmd.com/read/38578146/design-synthesis-and-evaluation-of-new-thiazolidin-4-ones-as-lpa-1-receptor-antagonists-for-breast-cancer-therapy
#31
JOURNAL ARTICLE
Meduri Bhagyalalitha, Pavan Sr, Ashwini Prabhu, Akshatha Hs, Sethu Arun Kumar, Manisha Singh, Karthik G Pujar, Gurubasavaraj Veeranna Pujar
Aim: Breast cancer has been a leading cause of mortality among women worldwide in recent years. Targeting the lysophosphatidic acid (LPA)-LPA1 pathway using small molecules could improve breast cancer therapy. Materials & methods: Thiazolidin-4-ones were developed and tested on MCF-7 cancer cells, and active compounds were analyzed for their effects on apoptosis, migration angiogenesis and LPA1 protein and gene expression. Results & conclusion: Compounds TZ-4 and TZ-6 effectively reduced the migration of MCF-7 cells, and induced apoptosis...
April 5, 2024: Future Medicinal Chemistry
https://read.qxmd.com/read/38574619/equisetum-arvense-standardized-dried-extract-hinders-age-related-osteosarcopenia
#32
JOURNAL ARTICLE
Laura Salvadori, Martina Paiella, Beatrice Castiglioni, Maria Laura Belladonna, Tommaso Manenti, Catia Ercolani, Luca Cornioli, Nausicaa Clemente, Andrea Scircoli, Roccaldo Sardella, Leonardo Tensi, Andrea Astolfi, Maria Letizia Barreca, Sara Chiappalupi, Giulia Gentili, Michela Bosetti, Guglielmo Sorci, Nicoletta Filigheddu, Francesca Riuzzi
Age-associated osteosarcopenia is an unresolved syndrome characterized by the concomitant loss of bone (osteopenia) and skeletal muscle (sarcopenia) tissues increasing falls, immobility, morbidity, and mortality. Unbalanced resorption of bone in the remodeling process and excessive protein breakdown, especially fast type II myosin heavy chain (MyHC-II) isoform and myofiber metabolic shift, are the leading causes of bone and muscle deterioration in the elderly, respectively. Equisetum arvense (EQ) is a plant traditionally recommended for many pathological conditions due to its anti-inflammatory properties...
April 3, 2024: Biomedicine & Pharmacotherapy
https://read.qxmd.com/read/38571619/antioxidant-activity-metabolic-profiling-in-silico-molecular-docking-and-admet-analysis-of-nano-selenium-treated-sesame-seed-bioactive-compounds-as-potential-novel-drug-targets-against-cardiovascular-disease-related-receptors
#33
JOURNAL ARTICLE
Ilyas Ahmad, Zia-Ur-Rehman Mashwani, Zohaib Younas, Tayyaba Yousaf, Ajaz Ahmad, Carmen Vladulescu
Sesame ( Sesamum indicum ) is abundant in a diverse range of lignans, including sesamin, and γ-tocopherol, constituting a cluster of bioactive phenolic compound used for food and medicinal purposes. Cardiovascular diseases remain a leading global health challenge, demanding vigilant prevention and innovative treatments. This study was carried out to evaluate the effect of plant mediated SeNPs on sesame metabolic profile and to screen and check the effect bioactive compounds against CVD via molecular drug docking technique...
April 15, 2024: Heliyon
https://read.qxmd.com/read/38571347/exploring-the-potentials-of-hyaluronic-acid-coated-polymeric-nanoparticles-in-enhanced-cancer-treatment-by-precision-drug-delivery-tackling-drug-resistance-and-reshaping-the-tumour-micro-environment
#34
JOURNAL ARTICLE
Harshvardhan Raval, Sankha Bhattacharya
Cancer is a global health issue that requires modern treatments. Biocompatibility, variable size, and customisable targeting ligands make polymeric nanoparticles (PNPs) a flexible cancer therapy platform. Dynamic nanocarriers, Hyaluronic Acid (HA) coated PNPs, target the overexpressed CD44 receptor in cancer. Through improved permeability and retention, HA, a naturally occurring, biodegradable polymer, increases tumor accumulation and penetration. Hyaluronic acid-grafted polymeric nanoparticles (HA-PNPs) provide a number of advantages over other varieties due to their distinct characteristics...
April 3, 2024: Current Medicinal Chemistry
https://read.qxmd.com/read/38570819/exploration-and-biological-evaluation-of-20-vinyl-pregnenes-a-step-forward-toward-selective-modulators-of-the-estrogen-receptor-%C3%AE-signaling-for-breast-cancer-treatment
#35
JOURNAL ARTICLE
Victoria Malakhova, Alexander Scherbakov, Danila Sorokin, Hanna Leanavets, Yaraslau Dzichenka, Igor Zavarzin, Yulia Volkova
A series of D-ring modified steroids bearing a vinyl ketone pendant were synthesized and evaluated for antiproliferative activity against breast cancer cell line and cytochromes P450. The lead compound, 21-vinyl 20-keto-pregnene (2f) (IC50  = 2.4 µM), was shown to be a promising candidate for future anticancer drug design, particularly against estrogen receptor α (ERα)-positive breast cancer. The lead compound was found to have a significant effect on the signaling pathways in parental and 4-hydroxytamoxifen-resistant cells...
April 3, 2024: Archiv der Pharmazie
https://read.qxmd.com/read/38570391/repurposing-of-drugs-targeting-heparan-sulphate-binding-site-of-dengue-virus-envelope-protein-an-in-silico-competitive-binding-study
#36
JOURNAL ARTICLE
Dwaipayan Chaudhuri, Satyabrata Majumder, Kalyan Giri
Dengue virus, an arbovirus, leads to millions of infections every year ultimately leading to a high rate of mortality. Highly effective and specific therapeutic option is not available till date to combat viral infection. One of the first stages in the virus lifecycle encompasses the viral entry into the host cell which is mediated by the interaction between heparan sulphate and the Dengue virus envelope protein in turn leading to the interaction between the envelope protein receptor binding domain and host cell receptors...
April 3, 2024: Molecular Diversity
https://read.qxmd.com/read/38567350/pcc0208057-as-a-small-molecule-inhibitor-of-trpc6-in-the-treatment-of-prostate-cancer
#37
JOURNAL ARTICLE
Yingjie Wei, Min Li, Yuemiao Hu, Jing Lu, Lin Wang, Qikun Yin, Xuechuan Hong, Jingwei Tian, Hongbo Wang
Prostate cancer (PCa) is a common malignant tumor, whose morbidity and mortality keep the top three in the male-related tumors in developed countries. Abnormal ion channels, such as transient receptor potential canonical 6 (TRPC6), are reported to be involved in the carcinogenesis and progress of prostate cancer and have become potential drug targets against prostate cancer. Here, we report a novel small molecule inhibitor of TRPC6, designated as PCC0208057, which can suppress the proliferation and migration of prostate cancer cells in vitro , and inhibit the formation of Human umbilical vein endothelial cells cell lumen...
2024: Frontiers in Pharmacology
https://read.qxmd.com/read/38566418/the-severity-of-musk-pathogenic-variants-is-predicted-by-the-protein-domain-they-disrupt
#38
JOURNAL ARTICLE
Benjamin T Cocanougher, Samuel W Liu, Ludmila Francescatto, Alexander Behura, Mariele Anneling, David G Jackson, Kristen L Deak, Chi D Hornik, Mai K ElMallah, Carolyn E Pizoli, Edward C Smith, Khoon Ghee Queenie Tan, Marie T McDonald
Biallelic loss of function variants in the MUSK gene result in two allelic disorders: 1) congenital myasthenic syndrome (CMS; OMIM 616325), a neuromuscular disorder which has a range of severity from severe neonatal-onset weakness to mild adult-onset weakness and 2) fetal akinesia deformation sequence (FADS; OMIM 208150), a form of pregnancy loss characterized by severe muscle weakness in the fetus. The MUSK gene codes for muscle specific kinase (MuSK), a receptor tyrosine kinase involved in the development of the neuromuscular junction...
April 1, 2024: HGG advances
https://read.qxmd.com/read/38564826/targeting-egfr-degradation-by-autophagosome-degraders
#39
JOURNAL ARTICLE
ZhongFeng Zhu, Jiaying Li, Shujun Shen, Hawaa Al-Furas, Shengrong Li, Yichen Tong, Yi Li, Yucheng Zeng, Qianyi Feng, Kaiyue Chen, Nan Ma, Fengtao Zhou, Zhang Zhang, Zhengqiu Li, Jiyan Pang, Ke Ding, Fang Xu
Several generations of epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors have been developed for the treatment of non-small cell lung cancer (NSCLC) in clinic. However, emerging drug resistance mediated by new EGFR mutations or activations by pass, leads to malignant progression of NSCLC. Proteolysis targeting chimeras (PROTACs) have been utilized to overcome the drug resistance acquired by mutant EGFR, newly potent and selective degraders are still need to be developed for clinical applications...
March 26, 2024: European Journal of Medicinal Chemistry
https://read.qxmd.com/read/38562011/epigenetic-programming-of-stochastic-olfactory-receptor-choice
#40
REVIEW
Nusrath Yusuf, Kevin Monahan
The mammalian sense of smell relies upon a vast array of receptor proteins to detect odorant compounds present in the environment. The proper deployment of these receptor proteins in olfactory sensory neurons is orchestrated by a suite of epigenetic processes that remodel the olfactory genes in differentiating neuronal progenitors. The goal of this review is to elucidate the central role of gene regulatory processes acting in neuronal progenitors of olfactory sensory neurons that lead to a singular expression of an odorant receptor in mature olfactory sensory neurons...
April 2024: Genesis: the Journal of Genetics and Development
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