keyword
https://read.qxmd.com/read/38342903/identification-of-candidate-genes-and-residues-for-improving-nitrogen-use-efficiency-in-the-n-sensitive-medicinal-plant-panax-notoginseng
#21
JOURNAL ARTICLE
Zhu Cun, Xia Li, Jin-Yan Zhang, Jie Hong, Li-Lin Gao, Jing Yang, Su-Yun Ma, Jun-Wen Chen
BACKGROUND: Nitrogen (N) metabolism-related key genes and conserved amino acid sites in key enzymes play a crucial role in improving N use efficiency (NUE) under N stress. However, it is not clearly known about the molecular mechanism of N deficiency-induced improvement of NUE in the N-sensitive rhizomatous medicinal plant Panax notoginseng (Burk.) F. H. Chen. To explore the potential regulatory mechanism, the transcriptome and proteome were analyzed and the three-dimensional (3D) information and molecular docking models of key genes were compared in the roots of P...
February 12, 2024: BMC Plant Biology
https://read.qxmd.com/read/38321345/addition-of-%C3%AE-ketoglutaric-acid-akg-reduces-deamination-in-chinese-perch-siniperca-chuatsi-fed-with-fermented-soybean-meal-as-a-substitute-for-fishmeal
#22
JOURNAL ARTICLE
Yufei Zhang, Jiacheng Hu, Peisong Lu, Ru Yang, Xu-Fang Liang, Liwei Liu
To alleviate amino acid imbalances in fermented soybean meal as a replacement for fishmeal feeds, this study evaluated the effects of adding lysine (Lys), methionine (Met), and α-ketoglutaric acid (AKG) to fermented soybean meals for Chinese perch. Chinese perch (34 ± 3 g) were fed five diets for 66 days (fishmeal as the protein source of the basal diet [FM]; fermented soybean meal as a substitute for 30% fishmeal in the soybean meal diet [FSM]; addition of crystalline Lys and Met [AA]; addition of α-ketoglutaric acid [AKG]; and simultaneous addition of crystalline Lys, Met, and AKG [BA] to the soybean meal diet)...
February 7, 2024: Fish Physiology and Biochemistry
https://read.qxmd.com/read/38309311/loss-of-expression-of-the-glutamate-dehydrogenase-gdh-of-streptococcus-suis-serotype-2-compromises-growth-and-pathogenicity
#23
JOURNAL ARTICLE
Lauren Chittick, Ogi Okwumabua
Streptococcus suis serotype 2 is a zoonotic agent that causes substantial economic losses to the swine industry and threatens human public health. Factors that contribute to its ability to cause disease are not yet fully understood. Glutamate dehydrogenase (GDH) is an enzyme found in living cells and plays vital roles in cellular metabolism. It has also been shown to affect pathogenic potential of certain bacteria. In this study, we constructed a S. suis serotype 2 GDH mutant (Δgdh) by insertional inactivation mediated by a homologous recombination event and confirmed loss of expression of GDH in the mutant by immunoblot and enzyme activity staining assays...
February 1, 2024: Microbial Pathogenesis
https://read.qxmd.com/read/38297812/3d-carbon-based-conductive-network-printed-for-glucose-sensors-on-curved-and-flexible-substrates
#24
JOURNAL ARTICLE
Chenhao Cong, Siva Subramanian, Gajanan A Bodkhe, Guangwei Wang, Zhijun Li, Rixuan Wang, Xinlin Li, Myunghee Kim, Se Hyun Kim
The rising prevalence of diabetes has led to an increased focus on real-time glucose monitoring. Wearable glucose sensor patches allow noninvasive, real-time monitoring, reducing patient discomfort compared to invasive sensors. However, most existing glucose sensor patches rely on complex and contaminating metal vapor deposition technologies, which pose limitations in practical production. In this study, we propose a novel approach for preparing graphite/multiwall carbon nanotubes (MWCNT)/reduced graphene oxide (rGO) using a high-viscosity ink, which can be easily obtained through simple mechanical stirring...
January 31, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38289384/identification-of-a-novel-thermostable-transaminase-and-its-application-in-l-phosphinothricin-biosynthesis
#25
JOURNAL ARTICLE
Han-Lin Liu, Pu-Hong Yi, Jia-Min Wu, Feng Cheng, Zhi-Qiang Liu, Li-Qun Jin, Ya-Ping Xue, Yu-Guo Zheng
Transaminase (TA) is a crucial biocatalyst for enantioselective production of the herbicide L-phosphinothricin (L-PPT). The use of enzymatic cascades has been shown to effectively overcome the unfavorable thermodynamic equilibrium of TA-catalyzed transamination reaction, also increasing demand for TA stability. In this work, a novel thermostable transaminase (PtTA) from Pseudomonas thermotolerans was mined and characterized. The PtTA showed a high specific activity (28.63 U/mg) towards 2-oxo-4-[(hydroxy)(methyl)phosphinoyl]butyric acid (PPO), with excellent thermostability and substrate tolerance...
January 30, 2024: Applied Microbiology and Biotechnology
https://read.qxmd.com/read/38278063/the-distinctive-level-of-interaction-between-carbon-and-nitrogen-metabolisms-in-the-leaves-of-submerged-macrophytes-plays-a-key-role-in-ammonium-detoxification
#26
JOURNAL ARTICLE
Samuel Wamburu Muthui, Li Wei, Wyckliffe Ayoma Ochieng, Elive Limunga Linda, Duncan Ochieng Otieno, Emmanuel Waswa Nyongesa, Fan Liu, Ling Xian
Possible ammonium detoxification mechanisms have been proposed recently, on submerged macrophytes, evidently illustrating that glutamate dehydrogenase (GDH) plays a greater role in ammonium detoxification compared to the primary glutamine synthetase/glutamate oxaloacetate transaminase (GS/GOGAT) pathway. In the current investigation, we cultured three submerged macrophytes to extreme concentrations of [NH4 + -N] of up to 50 mg/L with the aim of clarifying the interaction between carbon and nitrogen metabolisms...
January 13, 2024: Aquatic Toxicology
https://read.qxmd.com/read/38275800/detection-and-molecular-diversity-of-cryptosporidium-spp-and-giardia-duodenalis-in-the-endangered-iberian-lynx-lynx-pardinus-spain
#27
JOURNAL ARTICLE
Pablo Matas-Méndez, Gabriel Ávalos, Javier Caballero-Gómez, Alejandro Dashti, Sabrina Castro-Scholten, Débora Jiménez-Martín, David González-Barrio, Gemma J Muñoz-de-Mier, Begoña Bailo, David Cano-Terriza, Marta Mateo, Fernando Nájera, Lihua Xiao, Pamela C Köster, Ignacio García-Bocanegra, David Carmena
Cryptosporidium spp. and Giardia duodenalis are the main non-viral causes of diarrhoea in humans and domestic animals globally. Comparatively, much less information is currently available in free-ranging carnivore species in general and in the endangered Iberian lynx ( Lynx pardinus ) in particular. Cryptosporidium spp. and G. duodenalis were investigated with molecular (PCR and Sanger sequencing) methods in individual faecal DNA samples of free-ranging and captive Iberian lynxes from the main population nuclei in Spain...
January 22, 2024: Animals: An Open Access Journal From MDPI
https://read.qxmd.com/read/38267906/tim-3-galectin-9-interaction-and-glutamine-metabolism-in-aml-cell-lines-hl-60-and-thp-1
#28
JOURNAL ARTICLE
Hooriyeh Shapourian, Mustafa Ghanadian, Nahid Eskandari, Abolfazl Shokouhi, Gülderen Yanikkaya Demirel, Alexandr V Bazhin, Mazdak Ganjalikhani-Hakemi
BACKGROUND: T cell immunoglobulin and mucin-domain containing-3 (TIM-3) is a cell surface molecule that was first discovered on T cells. However, recent studies revealed that it is also highly expressed in acute myeloid leukemia (AML) cells and it is related to AML progression. As, Glutamine appears to play a prominent role in malignant tumor progression, especially in their myeloid group, therefore, in this study we aimed to evaluate the relation between TIM-3/Galectin-9 axis and glutamine metabolism in two types of AML cell lines, HL-60 and THP-1...
January 24, 2024: BMC Cancer
https://read.qxmd.com/read/38254622/structural-evolution-of-primate-glutamate-dehydrogenase-2-as-revealed-by-in-silico-predictions-and-experimentally-determined-structures
#29
JOURNAL ARTICLE
Ionela Litso, Andreas Plaitakis, Vasiliki E Fadouloglou, Mary Providaki, Michael Kokkinidis, Ioannis Zaganas
Glutamate dehydrogenase (GDH) interconverts glutamate to a-ketoglutarate and ammonia, interconnecting amino acid and carbohydrate metabolism. In humans, two functional GDH genes, GLUD1 and GLUD2 , encode for hGDH1 and hGDH2, respectively. GLUD2 evolved from retrotransposition of the GLUD1 gene in the common ancestor of modern apes. These two isoenzymes are involved in the pathophysiology of human metabolic, neoplastic, and neurodegenerative disorders. The 3D structures of hGDH1 and hGDH2 have been experimentally determined; however, no information is available about the path of GDH2 structure changes during primate evolution...
December 23, 2023: Biomolecules
https://read.qxmd.com/read/38243024/molecular-detection-and-genetic-characteristics-of-giardia-duodenalis-in-dairy-cattle-from-large-scale-breeding-farms-in-xinjiang-china
#30
JOURNAL ARTICLE
Qianming Zhao, Bin Yang, Meigui Huang, Meng Qi, Chunyan Xu, Bo Jing, Zhenjie Zhang
Giardia duodenalis is an intestinal protozoan that can infect both humans and animals, leading to public health issues and economic losses in the livestock industry. G. duodenalis has been reported to infect dairy cattle, but there is limited information available on large-scale dairy farms in Xinjiang, China. The study collected 749 fresh faecal samples from five large-scale cattle farms in Xinjiang, China. The study used a nested PCR assay of the small subunit ribosomal RNA (SSU rRNA*) gene to determine the presence of G...
January 20, 2024: Parasitology Research
https://read.qxmd.com/read/38227016/electrochemiluminescent-imaging-of-a-nadh-based-enzymatic-reaction-confined-within-giant-liposomes
#31
JOURNAL ARTICLE
Fatma Ben Trad, Bixente Carré, Jérôme Delacotte, Frédéric Lemaître, Manon Guille-Collignon, Stéphane Arbault, Neso Sojic, Eric Labbé, Olivier Buriez
Herein, transient releases either from NADH-loaded liposomes or enzymatic reactions confined in giant liposomes were imaged by electrochemiluminescence (ECL). NADH was first encapsulated with the [Ru(bpy)3 ]2+ luminophore inside giant liposomes (around 100 µm in diameter) made of DOPC/DOPG phospholipids (i.e., 1,2-dioleolyl-sn-glycero-3-phosphocholine/1,2-dioleoyl-sn-glycerol-3-phospho-(1'-rac-glycerol) sodium salt) on their inner- and outer-leaflet, respectively. Then, membrane permeabilization triggered upon contact between the liposome and a polarized ITO electrode surface and ECL was locally generated...
January 16, 2024: Analytical and Bioanalytical Chemistry
https://read.qxmd.com/read/38203800/effect-of-nutraceutical-factors-on-hepatic-intermediary-metabolism-in-wistar-rats-with-induced-tendinopathy
#32
JOURNAL ARTICLE
Marta Ramos-Barbero, Eva E Rufino-Palomares, Sergio Serrano-Carmona, Manuel Hernández-Yera, Leticia García-Salguero, José Antonio Lupiáñez, Amalia Pérez-Jiménez
Tendinopathy (TP) is a complex clinical syndrome characterized by local inflammation, pain in the affected area, and loss of performance, preceded by tendon injury. The disease develops in three phases: Inflammatory phase, proliferative phase, and remodeling phase. There are currently no proven treatments for early reversal of this type of injury. However, the metabolic pathways of the transition metabolism, which are necessary for the proper functioning of the organism, are known. These metabolic pathways can be modified by a number of external factors, such as nutritional supplements...
January 3, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38189955/regulation-of-a-novel-dsgata1-from-dunaliella-salina-on-the-synthesis-of-carotenoids-under-red-light
#33
JOURNAL ARTICLE
Yao Song, Yanhong Lan, Ke Li, Dairong Qiao, Yi Cao, Hui Xu
Dunaliella salina is a high-quality industrial effector for carotenoid production. The mechanism by which red light regulates carotenoid synthesis is still unclear. In this study, a transcription factor of DsGATA1 with a distinct structure was discovered in D. salina. The recognition motif of DsGATA1 was comparable to that of plant and fungal GATA, despite its evolutionary proximity to animal-derived GATA. The expression of DsGATA1 in D. salina was still noticeably decreased when exposed to red light. Analysis of physiological and biochemical transcriptomic data from overexpressed, interfering, and wild-type strains of DsGATA1 revealed that DsGATA1 acts as a global regulator of D...
December 2024: Applied Microbiology and Biotechnology
https://read.qxmd.com/read/38183486/the-application-of-bacteria-derived-dehydrogenases-and-oxidases-in-the-synthesis-of-gold-nanoparticles
#34
JOURNAL ARTICLE
Lela Martinaga, Roland Ludwig, Iva Rezić, Martina Andlar, Dietmar Pum, Ana Vrsalović Presečki
In this work the green synthesis of gold nanoparticles (Au-NPs) using the oxidoreductive enzymes Myriococcum thermophilum cellobiose dehydrogenase (Mt CDH), Glomerella cingulata glucose dehydrogenase (Gc GDH), and Aspergillus niger glucose oxidase (An GOX)) as bioreductants was investigated. The influence of reaction conditions on the synthesis of Au-NPs was examined and optimised. The reaction kinetics and the influence of Au ions on the reaction rate were determined. Based on the kinetic study, the mechanism of Au-NP synthesis was proposed...
December 2024: Applied Microbiology and Biotechnology
https://read.qxmd.com/read/38159859/a-versatile-in-situ-cofactor-enhancing-system-for-meeting-cellular-demands-for-engineered-metabolic-pathways
#35
JOURNAL ARTICLE
Juthamas Jaroensuk, Chalermroj Sutthaphirom, Jittima Phonbuppha, Wachirawit Chinantuya, Chatchai Kesornpun, Nattanon Akeratchatapan, Narongyot Kittipanukul, Kamonwan Phatinuwat, Sopapan Atichartpongkul, Mayuree Fuangthong, Thunyarat Pongtharangkul, Frank Hollmann, Pimchai Chaiyen
Cofactor imbalance obstructs the productivities of metabolically engineered cells. Herein, we employed a minimally perturbing system, xylose reductase and lactose (XR/lactose), to increase levels of a pool of sugar-phosphates which are connected to the biosynthesis of NAD(P)H, FAD, FMN and ATP in Escherichia coli. The XR/lactose system could increase the amounts of the precursors of these cofactors and was tested with three different metabolically engineered cell systems (fatty alcohol biosynthesis, bioluminescence light generation and alkane biosynthesis) with different cofactor demands...
December 28, 2023: Journal of Biological Chemistry
https://read.qxmd.com/read/38148220/glutamate-dehydrogenase-in-liverworld-a-study-in-selected-species-to-explore-a-key-enzyme-of-plant-primary-metabolism-in-marchantiophyta
#36
JOURNAL ARTICLE
Martina Brambilla, Giorgio Chiari, Mauro Commisso, Luca Nerva, Rita Musetti, Alessandro Petraglia, Francesca Degola
In plants, glutamate dehydrogenase (GDH) is an ubiquitous enzyme that catalyzes the reversible amination of 2-oxoglutarate in glutamate. It contributes to both the amino acid homeostasis and the management of intracellular ammonium, and it is regarded as a key player at the junction of carbon and nitrogen assimilation pathways. To date, information about the GDH of terrestrial plants refers to a very few species only. We focused on selected species belonging to the division Marchantiophyta, providing the first panoramic overview of biochemical and functional features of GDH in liverworts...
2023: Physiologia Plantarum
https://read.qxmd.com/read/38142022/shrimp-sirt4-promotes-white-spot-syndrome-virus-replication
#37
JOURNAL ARTICLE
Tan Yu Kent, Brandon Rafael de Jesús Castillo-Corea, Ramya Kumar, Ping-Hung Lai, Shih-Shun Lin, Han-Ching Wang
In WSSV pathogenesis, the molecular mechanisms and the key host factors that regulate the viral replication and morphogenesis remain unclear. However, like most viruses, WSSV is known to induce metabolic reprogramming in several metabolic pathways including the host glutamine metabolism, and several recent reports have suggested that the sirtuins SIRT3, SIRT4, and SIRT5, which belong to a family of NAD + -dependent deacetylases, play an important role in this regulation. Here we focus on characterizing LvSIRT4 from Litopenaeus vannamei and investigate its role in regulating glutamine dehydrogenase (GDH), an important enzyme that promotes glutaminolysis and viral replication...
December 21, 2023: Fish & Shellfish Immunology
https://read.qxmd.com/read/38136808/prevalence-and-multilocus-genotyping-of-giardia-duodenalis-in-donkeys-in-shanxi-province-north-china
#38
JOURNAL ARTICLE
Wen-Wei Gao, Shuo Zhang, Tian-Hong Zhang, Han-Dan Xiao, Nan Su, Meng-Fan Tao, Ze-Xuan Wu, Ze-Dong Zhang, Xing-Quan Zhu, Shi-Chen Xie
Giardia duodenalis is a ubiquitous flagellated protozoan, causing significant economic losses to animal husbandry and posing threats to public health. China ranks the world's sixth largest major producer of donkeys, rearing approximately 2.6 million donkeys in 2019, but limited investigation of G. duodenalis prevalence has been conducted in the past, and it is yet to be known whether donkeys in Shanxi Province are infected with G. duodenalis . In the present study, a total of 815 fecal samples collected from donkeys in representative regions of Shanxi Province, North China, were examined for G...
December 6, 2023: Animals: An Open Access Journal From MDPI
https://read.qxmd.com/read/38131780/reduced-graphene-oxide-organic-dye-composites-for-bioelectroconversion-of-saccharides-application-for-detection-of-saccharides-and-%C3%AE-amylase-assessments
#39
JOURNAL ARTICLE
Marius Butkevicius, Justina Gaidukevic, Vidute Gureviciene, Julija Razumiene
In this study, PQQ-dependent glucose dehydrogenase (PQQ-GDH) was immobilized onto reduced graphene oxide (rGO) modified with organic dyes from three different classes (acridine, arylmethane, and diazo); namely, neutral red (NR), malachite green (MG), and congo red (CR) formed three types of biosensors. All three rGO/organic dye composites were characterized by scanning electron microscopy, X-ray photoelectron spectroscopy, and Raman spectroscopy. The impact of three rGO/organic dye modifications employed in bioelectrocatalytic systems on changes in enzyme activity and substrate selectivity was investigated...
December 8, 2023: Biosensors
https://read.qxmd.com/read/38112195/prevalence-of-toxigenic-clostridium-difficile-in-hospitalized-patients-in-the-southwestern-province-of-saudi-arabia-confirmation-using-the-genexpert-analysis
#40
JOURNAL ARTICLE
Nader Kameli, Vinod Kumar Basode, Ahmed Abdulhaq, Mohammed Uthman A Alamoudi, Khalid Amaash Mohammed Zain, Ahmad Hassn Ghzwani
Clostridium difficile ( Clostridioides difficile ) is a leading cause of nosocomial infections in hospitalized patients worldwide. Stool samples were collected from 112 inpatients admitted to different hospitals and were screened for C. difficile GDH + toxin A + B by immunoassay, and all positive samples by immunoassay were processed for molecular detection of C. difficile using the GeneXpert assay. C. difficile strains were detected in 12 (10.71%) out of 112 stool samples using the GDH + toxin A + B immunoassay method and toxigenic C...
December 31, 2024: Libyan Journal of Medicine
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