keyword
https://read.qxmd.com/read/38529472/the-role-of-transcriptional-regulators-in-metal-ion-homeostasis-of-mycobacterium-tuberculosis
#21
REVIEW
Shuxian Wang, Ren Fang, Hui Wang, Xiaotian Li, Jiayin Xing, Zhaoli Li, Ningning Song
Metal ions are essential trace elements for all living organisms and play critical catalytic, structural, and allosteric roles in many enzymes and transcription factors. Mycobacterium tuberculosis (MTB), as an intracellular pathogen, is usually found in host macrophages, where the bacterium can survive and replicate. One of the reasons why Tuberculosis (TB) is so difficult to eradicate is the continuous adaptation of its pathogen. It is capable of adapting to a wide range of harsh environmental stresses, including metal ion toxicity in the host macrophages...
2024: Frontiers in Cellular and Infection Microbiology
https://read.qxmd.com/read/38528148/tollip-inhibits-lipid-accumulation-and-the-integrated-stress-response-in-alveolar-macrophages-to-control-mycobacterium-tuberculosis-infection
#22
JOURNAL ARTICLE
Sambasivan Venkatasubramanian, Courtney R Plumlee, Kimberly A Dill-McFarland, Sara B Cohen, Benjamin H Gern, Divya A Rane, Mackenzie K Meyer, Aparajita Saha, Sarah A Hinderstein, Gemma L Pearson, Anne C Lietzke, Amanda Pacheco, Yu-Hua Chow, Chi F Hung, Scott A Soleimanpour, Matthew Altman, Kevin B Urdahl, Javeed A Shah
A polymorphism causing deficiencies in Toll-interacting protein (TOLLIP), an inhibitory adaptor protein affecting endosomal trafficking, is associated with increased tuberculosis (TB) risk. It is, however, unclear how TOLLIP affects TB pathogenesis. Here we show that TB severity is increased in Tollip-/- mice, characterized by macrophage- and T cell-driven inflammation, foam cell formation and lipid accumulation. Tollip-/- alveolar macrophages (AM) specifically accumulated lipid and underwent necrosis. Transcriptional and protein analyses of Mycobacterium tuberculosis (Mtb)-infected, Tollip-/- AM revealed increased EIF2 signalling and downstream upregulation of the integrated stress response (ISR)...
April 2024: Nature Microbiology
https://read.qxmd.com/read/38507491/molecular-basis-for-substrate-transport-of-mycobacterium-tuberculosis-abc-importer-dppabcd
#23
JOURNAL ARTICLE
Tianyu Hu, Xiaolin Yang, Yuanchen Zhu, Fengjiang Liu, Xiuna Yang, Zhiqi Xiong, Jingxi Liang, Zhenli Lin, Yuting Ran, Luke W Guddat, Zihe Rao, Bing Zhang
The type I adenosine 5'-triphosphate (ATP)-binding cassette (ABC) transporter DppABCD is believed to be responsible for the import of exogenous heme as an iron source into the cytoplasm of the human pathogen Mycobacterium tuberculosis ( Mtb ). Additionally, this system is also known to be involved in the acquisition of tri- or tetra-peptides. Here, we report the cryo-electron microscopy structures of the dual-function Mtb DppABCD transporter in three forms, namely, the apo , substrate-bound, and ATP-bound states...
March 22, 2024: Science Advances
https://read.qxmd.com/read/38501584/hadbd-dehydratase-from-mycobacterium-tuberculosis-fatty-acid-synthase-type-ii-a-singular-structure-for-a-unique-function
#24
JOURNAL ARTICLE
Pascaline Bories, Julie Rima, Samuel Tranier, Julien Marcoux, Yasmina Grimoire, Mathilde Tomaszczyk, Anne Launay, Karine Fata, Hedia Marrakchi, Odile Burlet-Schiltz, Lionel Mourey, Manuelle Ducoux-Petit, Fabienne Bardou, Cécile Bon, Annaïk Quémard
Worldwide, tuberculosis is the second leading infectious killer and multidrug resistance severely hampers disease control. Mycolic acids are a unique category of lipids that are essential for viability, virulence, and persistence of the causative agent, Mycobacterium tuberculosis (Mtb). Therefore, enzymes involved in mycolic acid biosynthesis represent an important class of drug targets. We previously showed that the (3R)-hydroxyacyl-ACP dehydratase (HAD) protein HadD is dedicated mainly to the production of ketomycolic acids and plays a determinant role in Mtb biofilm formation and virulence...
April 2024: Protein Science
https://read.qxmd.com/read/38501428/biochemical-and-structural-characterization-reveals-rv3400-codes-for-%C3%AE-phosphoglucomutase-in-mycobacterium-tuberculosis
#25
JOURNAL ARTICLE
Latika Singh, Subramanian Karthikeyan, Krishan Gopal Thakur
Mycobacterium tuberculosis (Mtb) adapt to various host environments and utilize a variety of sugars and lipids as carbon sources. Among these sugars, maltose and trehalose, also play crucial role in bacterial physiology and virulence. However, some key enzymes involved in trehalose and maltose metabolism in Mtb are not yet known. Here we structurally and functionally characterized a conserved hypothetical gene Rv3400. We determined the crystal structure of Rv3400 at 1.7 Å resolution. The crystal structure revealed that Rv3400 adopts Rossmann fold and shares high structural similarity with haloacid dehalogenase family of proteins...
April 2024: Protein Science
https://read.qxmd.com/read/38489841/molecular-insights-into-the-differential-effects-of-acetylation-on-the-aggregation-of-tau-microtubule-binding-repeats
#26
JOURNAL ARTICLE
Yu Zou, Lulu Guan, Jingwang Tan, Bote Qi, Yunxiang Sun, Fengjuan Huang, Qingwen Zhang
Aggregation of tau protein into intracellular fibrillary inclusions is characterized as the hallmark of tauopathies, including Alzheimer's disease and chronic traumatic encephalopathy. The microtubule-binding (MTB) domain of tau, containing either three or four repeats with sequence similarities, plays an important role in determining tau's aggregation. Previous studies have reported that abnormal acetylation of lysine residues displays a distinct effect on the formation of pathological tau aggregates. However, the underlying molecular mechanism remains mostly elusive...
March 15, 2024: Journal of Chemical Information and Modeling
https://read.qxmd.com/read/38488618/nucleic-acid-and-nanomaterial-synergistic-amplification-enables-dual-targets-of-ultrasensitive-fluorescence-quantification-to-improve-the-efficacy-of-clinical-tuberculosis-diagnosis
#27
JOURNAL ARTICLE
Tian Shi, Pengjun Jiang, Wu Peng, Yanming Meng, Binwu Ying, Piaopiao Chen
Interferon-γ (IFN-γ) release assays (IGRAs) are constrained by the limited diagnostic performance of a single indicator and the excessive Mycobacterium tuberculosis ( Mtb ) antigen stimulation time. This study presents a simultaneous, homogeneous, rapid, and ultrasensitive fluorescence quantification strategy for IFN-γ and IFN-γ-induced protein 10 (IP-10). This method relies on the high-affinity binding of aptamers to IFN-γ and IP-10, the enzyme-free catalytic hairpin assembly reaction, and the heightened sensitivity of CdTe quantum dots to Ag+ and hairpin structure C-Ag+ -C and carbon dots to Hg2+ and hairpin structure T-Hg2+ -T...
March 15, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38486497/synthesis-of-an-immunologically-active-heptamannoside-of-mycobacterium-tuberculosis-by-the-au-ag-catalyzed-activation-of-ethynylcyclohexyl-glycosyl-carbonate-donor
#28
JOURNAL ARTICLE
Ganesh P Shinde, Yogesh Sutar, Niteshlal Kasdekar, Pooja Joshi, Omid Rasool, Lech Ignatowicz, Beston Hamasur, Srinivas Hotha
Tuberculosis (TB) is one of the most dreadful diseases, killing more than 3 million humans annually. M. tuberculosis (MTb) is the causative agent for TB and has a thick and waxy cell wall, making it an attractive target for immunological studies. In this study, a heptamannopyranoside containing 1 → 2 and 1 → 6 α-mannopyranosidic linkages has been explored for the immunological evaluations. The conjugation-ready heptamannopyranoside was synthesized by exploiting the salient features of recently discovered [Au]/[Ag]-glycosidation of ethynylcyclohexyl glycosyl carbonate donors...
March 15, 2024: Organic Letters
https://read.qxmd.com/read/38486387/identification-of-genes-encoded-toxin-antitoxin-system-in-mycobacterium-tuberculosis-strains-from-clinical-sample
#29
JOURNAL ARTICLE
Karthikeyan Sundaram, Leela Kagithakara Vajravelu, Ravichandiran Velayutham, Utpal Mohan
BACKGROUND: The toxin-antitoxin system is a genetic element that is highly present in Mycobacterium tuberculosis (MTB), the causative agent of tuberculosis. The toxin-antitoxin sys-tem comprises toxin protein and antitoxin protein or non-encoded RNA interacting with each other and inhibiting toxin activity. M. Tuberculosis has more classes of TA loci than non-tubercle bacilli and other microbes, including VapBC, HigBA, MazEF, ParDE, RelBE, MbcTA, PemIK, DarTG, MenTA, one tripartite type II TAC chaperone system, and hypothetical proteins...
March 14, 2024: Infectious Disorders Drug Targets
https://read.qxmd.com/read/38476473/identification-and-validation-of-genes-related-to-macrophage-polarization-and-cell-death-modes-under-mycobacterium-tuberculosis-infection
#30
JOURNAL ARTICLE
Zisha Yang, Jiajun Wang, Jiang Pi, Di Hu, Junfa Xu, Yi Zhao, Yan Wang
PURPOSE: To investigate the correlation between M1/M2 macrophages (M1/M2 Mφ) and cell death mode under Mycobacterium tuberculosis (Mtb) infection. METHODS: Raw gene expression profiles were collected from the Gene Expression Omnibus (GEO) database. Genes related to different cell death modes were collected from the KEGG, FerrDb and GSEA databases. The differentially expressed genes (DEGs) of the gene expression profiles were identified using the limma package in R...
2024: Journal of Inflammation Research
https://read.qxmd.com/read/38447849/identification-and-characterization-of-repurposed-small-molecule-inhibitors-of-mycobacterium-tuberculosis-caseinolytic-protease-b-clpb-as-anti-mycobacterials
#31
JOURNAL ARTICLE
Digvijay Singh, Rahul Sharma, Salma Jamal, Meetu Agarwal, Sonam Grover, Janendra K Batra
Mycobacterium tuberculosis (Mtb) caseinolytic protease B (ClpB) is a chaperone possessing a unique ability to resolubilize the aggregated proteins in vivo. ClpB has been shown to be important for the survival of Mtb within the host. Thus, it appears to be a promising target to develop new therapeutic molecules against tuberculosis. In this study, we have screened FDA approved compounds in silico to identify inhibitors against Mtb ClpB. In our screen, several compounds interacted with ClpB. The top four compounds, namely framycetin, gentamicin, ribostamycin and tobramycin showing the highest binding energy were selected for further investigation...
March 4, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38443338/homo-bacprotac-induced-degradation-of-clpc1-as-a-strategy-against-drug-resistant-mycobacteria
#32
JOURNAL ARTICLE
Lukas Junk, Volker M Schmiedel, Somraj Guha, Katharina Fischel, Peter Greb, Kristin Vill, Violetta Krisilia, Lasse van Geelen, Klaus Rumpel, Parvinder Kaur, Ramya V Krishnamurthy, Shridhar Narayanan, Radha Krishan Shandil, Mayas Singh, Christiane Kofink, Andreas Mantoulidis, Philipp Biber, Gerhard Gmaschitz, Uli Kazmaier, Anton Meinhart, Julia Leodolter, David Hoi, Sabryna Junker, Francesca Ester Morreale, Tim Clausen, Rainer Kalscheuer, Harald Weinstabl, Guido Boehmelt
Antimicrobial resistance is a global health threat that requires the development of new treatment concepts. These should not only overcome existing resistance but be designed to slow down the emergence of new resistance mechanisms. Targeted protein degradation, whereby a drug redirects cellular proteolytic machinery towards degrading a specific target, is an emerging concept in drug discovery. We are extending this concept by developing proteolysis targeting chimeras active in bacteria (BacPROTACs) that bind to ClpC1, a component of the mycobacterial protein degradation machinery...
March 5, 2024: Nature Communications
https://read.qxmd.com/read/38442687/distinctive-antibody-responses-to-mycobacterium-tuberculosis-in-pulmonary-and-brain-infection
#33
JOURNAL ARTICLE
Marianna Spatola, Nadège Nziza, Edward B Irvine, Deniz Cizmeci, Wonyeong Jung, Le Hong Van, Le Thanh Hoang Nhat, Vu Thi Ngoc Ha, Nguyen Hoan Phu, Ho Dang Trung Nghia, Guy Thwaites, Douglas A Lauffenburger, Sarah Fortune, Nguyen Thuy Thuong Thuong, Galit Alter
Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis (TB), remains a global health burden. While Mtb is primarily a respiratory pathogen, it can spread to other organs, including the brain and meninges, causing TB meningitis (TBM). However, little is known about the immunological mechanisms that leads to differential disease across organs. Attention has focused on differences in T cell responses in the control of Mtb in the lungs, but emerging data point to a role for antibodies, as both biomarkers of disease control and as antimicrobial molecules...
March 5, 2024: Brain
https://read.qxmd.com/read/38434349/identification-of-mycobacterium-tuberculosis-transcriptional-repressor-ethr-inhibitors-shape-based-search-and-machine-learning-studies
#34
JOURNAL ARTICLE
Rupesh V Chikhale, Gaber E Eldesoky, Mahima Sudhir Kolpe, Vikramsinh Sardarsinh Suryawanshi, Pritee Chunarkar Patil, Shovonlal Bhowmick
Tuberculosis has been a challenge to the world since prehistoric times, and with the advent of drug-resistant strains, it has become more challenging to treat this infection. Ethionamide (ETH), a second-line drug, acts as a prodrug and targets mycolic acid synthesis by targeting the enoyl-acyl carrier protein reductase (InhA) enzyme. Mycobacterium tuberculosis (Mtb) EthR is an ethA gene repressor required to activate prodrug ETH. Recent studies suggest targeting the EthR could lead to newer drug molecules that would help better activate the ETH or complement this process...
March 15, 2024: Heliyon
https://read.qxmd.com/read/38433218/circrna_slc8a1-promotes-the-survival-of-mycobacterium-tuberculosis-in-macrophages-by-upregulating-expression-of-autophagy-related-protein-sqstm1-p62-to-activate-the-nf-%C3%AE%C2%BAb-pathway
#35
JOURNAL ARTICLE
Zhenyun Li, Yuan Gao, Bianfang Zhang, Wei Dong, Yuling Xi, Yan Li, Junwei Cui
Macrophages act as the first immune defense line of the host against Mycobacterium tuberculosis (Mtb). A previous study showed that circRNA_SLC8A1 was significantly upregulated in Mtb-infected macrophages, but its regulatory mechanism in anti-tuberculosis infection is unclear. Therefore, this study aimed to investigate the role of circRNA_SLC8A1 in the anti-tuberculosis activity of macrophages. We showed that circRNA_SLC8A1 was upregulated in tuberculosis patients. Moreover, the binding sites of miR-20b-5p on circRNA_SLC8A1 and Sequestosome 1 (SQSTM1/p62) mRNA were predicted by StarBase and verified by the double luciferase reporter gene assay...
March 4, 2024: Scientific Reports
https://read.qxmd.com/read/38425033/the-structure-of-mycobacterium-thermoresistibile-mmps5-reveals-a-conserved-disulfide-bond-across-mycobacteria
#36
JOURNAL ARTICLE
Bonnie J Cuthbert, Jessica Mendoza, Rodger de Miranda, Kadamba Papavinasasundaram, Christopher M Sassetti, Celia W Goulding
The tuberculosis (TB) emergency has been a pressing health threat for decades. With the emergence of drug resistant TB and complications from the COVID-19 pandemic, the TB health crisis is more serious than ever. Mycobacterium tuberculosis (Mtb), the causative agent of TB, requires iron for its survival. Thus, Mtb has evolved several mechanisms to acquire iron from the host. Mtb produces two siderophores, mycobactin and carboxymycobactin, which scavenge for host iron. Mtb siderophore-dependent iron acquisition requires the export of apo-siderophores from the cytosol to the host environment and import of iron-bound siderophores...
February 29, 2024: Metallomics: Integrated Biometal Science
https://read.qxmd.com/read/38419080/set-up-of-a-pharmaceutical-cell-bank-of-magnetospirillum-gryphiswaldense-msr1-magnetotactic-bacteria-producing-highly-pure-magnetosomes
#37
JOURNAL ARTICLE
Théo Chades, Raphaël Le Fèvre, Imène Chebbi, Karine Blondeau, François Guyot, Edouard Alphandéry
We report the successful fabrication of a pharmaceutical cellular bank (PCB) containing magnetotactic bacteria (MTB), which belong to the Magnetospirillum gryphiswaldense MSR1 species. To produce such PCB, we amplified MTB in a minimal growth medium essentially devoid of other heavy metals than iron and of CMR (Carcinogenic, mutagenic and reprotoxic) products. The PCB enabled to acclimate MTB to such minimal growth conditions and then to produce highly pure magnetosomes composed of more than 99.9% of iron. The qualification of the bank as a PCB relies first on a preserved identity of the MTB compared with the original strain, second on genetic bacterial stability observed over 100 generations or under cryo-preservation for 16 months, third on a high level of purity highlighted by an absence of contaminating microorganisms in the PCB...
February 28, 2024: Microbial Cell Factories
https://read.qxmd.com/read/38415774/a-seven-sex-species-recognizes-self-and-non-self-mating-type-via-a-novel-protein-complex
#38
JOURNAL ARTICLE
Guanxiong Yan, Yang Ma, Yanfang Wang, Jing Zhang, Haoming Cheng, Fanjie Tan, Su Wang, Delin Zhang, Jie Xiong, Ping Yin, Wei Miao
Although most species have two sexes, multisexual (or multi-mating type) species are also widespread. However, it is unclear how mating-type recognition is achieved at the molecular level in multisexual species. The unicellular ciliate Tetrahymena thermophila has seven mating types, which are determined by the MTA and MTB proteins. In this study, we found that both proteins are essential for cells to send or receive complete mating-type information, and transmission of the mating-type signal requires both proteins to be expressed in the same cell...
February 28, 2024: ELife
https://read.qxmd.com/read/38408543/mycobacterium-tuberculosis-protein-ppe15-rv1039c-possesses-eukaryote-like-sh3-domain-that-interferes-with-nadph-oxidase-assembly-and-reactive-oxygen-species-production
#39
JOURNAL ARTICLE
Priyanka, Sadhna Sharma, Hemant Joshi, Chanchal Kumar, Rashid Waseem, Monika Sharma
Inhibition of Reactive Oxygen Species (ROS) is one of the strategies that Mycobacterium tuberculosis (Mtb) employs as its defence mechanism. In this study, the role of PPE15 (Rv1039c), a late-stage protein, has been investigated in modulating the cellular ROS. We discovered PPE15 to be a secretory protein that downregulates ROS generation in THP1 macrophages. Our in-silico analysis revealed the presence of a eukaryote-like SH3 (SH3e) domain in PPE15. The predicted SH3e-domain of PPE15 was found to interact with cytosolic components of NADPH Oxidase (NOX), p67phox and p47phox through molecular docking...
February 24, 2024: Biochimica et Biophysica Acta. Molecular Cell Research
https://read.qxmd.com/read/38404880/tuberculosis-vaccine-developments-and-efficient-delivery-systems-a-comprehensive-appraisal
#40
REVIEW
Rasoul Hoseinpour, Alka Hasani, Behzad Baradaran, Jalal Abdolalizadeh, Roya Salehi, Akbar Hasani, Edris Nabizadeh, Mina Yekani, Roqaiyeh Hasani, Hossein Samadi Kafil, Khalil Azizian, Mohammad Yousef Memar
Despite the widespread use of the Bacillus Calmette-Guérin (BCG) vaccine, Mycobacterium tuberculosis (MTB) continues to be a global burden. Vaccination has been proposed to prevent and treat tuberculosis (TB) infection, and several of them are in different phases of clinical trials. Though vaccine production is in progress but requires more attention. There are several TB vaccines in the trial phase, most of which are based on a combination of proteins/adjuvants or recombinant viral vectors used for selected MTB antigens...
February 29, 2024: Heliyon
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