keyword
https://read.qxmd.com/read/38684838/sglt2i-impact-on-hcc-incidence-in-patients-with-fatty-liver-disease-and-diabetes-a-nation-wide-cohort-study-in-south-korea
#21
JOURNAL ARTICLE
Hyo Jung Cho, Eunyoung Lee, Soon Sun Kim, Jae Youn Cheong
This study evaluated the effect of sodium-glucose cotransporter-2 inhibitors (SGLT2i) on cancer development, particularly in hepatocellular carcinoma (HCC), in individuals with concomitant fatty liver disease (FLD) and type 2 diabetes mellitus (T2DM). Using data from Korea's Health Insurance Review and Assessment Service, we performed Kaplan-Meier and Cox regression analyses in patients with non-alcoholic fatty liver disease (NAFLD) and T2DM (NAFLD-T2DM cohort) and those with chronic viral hepatitis (CVH) alongside FLD and T2DM (FLD-T2DM-CVH cohort)...
April 29, 2024: Scientific Reports
https://read.qxmd.com/read/38684722/dynamic-diversity-of-sars-cov-2-genetic-mutations-in-a-lung-transplantation-patient-with-persistent-covid-19
#22
JOURNAL ARTICLE
Hidetoshi Igari, Seiichiro Sakao, Takayuki Ishige, Kengo Saito, Shota Murata, Misuzu Yahaba, Toshibumi Taniguchi, Akiko Suganami, Kazuyuki Matsushita, Yutaka Tamura, Takuji Suzuki, Eiji Ido
Numerous SARS-CoV-2 variant strains with altered characteristics have emerged since the onset of the COVID-19 pandemic. Remdesivir (RDV), a ribonucleotide analogue inhibitor of viral RNA polymerase, has become a valuable therapeutic agent. However, immunosuppressed hosts may respond inadequately to RDV and develop chronic persistent infections. A patient with respiratory failure caused by interstitial pneumonia, who had undergone transplantation of the left lung, developed COVID-19 caused by Omicron BA.5 strain with persistent chronic viral shedding, showing viral fusogenicity...
April 29, 2024: Nature Communications
https://read.qxmd.com/read/38684706/cheminformatics-approach-to-identify-andrographolide-derivatives-as-dual-inhibitors-of-methyltransferases-nsp14-and-nsp16-of-sars-cov-2
#23
JOURNAL ARTICLE
Jobin Thomas, Anupam Ghosh, Shivendu Ranjan, Jitendra Satija
The Covid-19 pandemic outbreak has accelerated tremendous efforts to discover a therapeutic strategy that targets severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) to control viral infection. Various viral proteins have been identified as potential drug targets, however, to date, no specific therapeutic cure is available against the SARS-CoV-2. To address this issue, the present work reports a systematic cheminformatic approach to identify the potent andrographolide derivatives that can target methyltransferases of SARS-CoV-2, i...
April 29, 2024: Scientific Reports
https://read.qxmd.com/read/38684655/hiv-transmission-dynamics-and-population-wide-drug-resistance-in-rural-south-africa
#24
JOURNAL ARTICLE
Steven A Kemp, Kimia Kamelian, Diego F Cuadros, Mark T K Cheng, Elphas Okango, Willem Hanekom, Thumbi Ndung'u, Deenan Pillay, David Bonsall, Emily B Wong, Frank Tanser, Mark J Siedner, Ravindra K Gupta
Despite expanded antiretroviral therapy (ART) in South Africa, HIV-1 transmission persists. Integrase strand transfer inhibitors (INSTI) and long-acting injectables offer potential for superior viral suppression, but pre-existing drug resistance could threaten their effectiveness. In a community-based study in rural KwaZulu-Natal, prior to widespread INSTI usage, we enroled 18,025 individuals to characterise HIV-1 drug resistance and transmission networks to inform public health strategies. HIV testing and reflex viral load quantification were performed, with deep sequencing (20% variant threshold) used to detect resistance mutations...
April 29, 2024: Nature Communications
https://read.qxmd.com/read/38683190/-de-novo-design-of-potential-peptide-analogs-against-the-main-protease-of-omicron-variant-using-in-silico-studies
#25
JOURNAL ARTICLE
Stanly Paul M L, Sonia Kumari, Tamás A Martinek, Elizabeth Sobhia M
SARS-CoV-2 and its variants are crossing the immunity barrier induced through vaccination. Recent Omicron sub-variants are highly transmissible and have a low mortality rate. Despite the low severity of Omicron variants, these new variants are known to cause acute post-infectious syndromes. Nowadays, novel strategies to develop new potential inhibitors for SARS-CoV-2 and other Omicron variants have gained prominence. For viral replication and survival the main protease of SARS-CoV-2 plays a vital role. Peptide-like inhibitors that mimic the substrate peptide have already proved to be effective in inhibiting the Mpro of SARS-CoV-2 variants...
April 29, 2024: Physical Chemistry Chemical Physics: PCCP
https://read.qxmd.com/read/38682614/viral-rna-capping-mechanisms-and-antiviral-therapy
#26
REVIEW
Saini Chen, Zhimin Jiang, Qiuchen Li, Wenliang Pan, Yu Chen, Jinhua Liu
RNA capping is an essential trigger for protein translation in eukaryotic cells. Many viruses have evolved various strategies for initiating the translation of viral genes and generating progeny virions in infected cells via synthesizing cap structure or stealing the RNA cap from nascent host messenger ribonucleotide acid (mRNA). In addition to protein translation, a new understanding of the role of the RNA cap in antiviral innate immunity has advanced the field of mRNA synthesis in vitro and therapeutic applications...
May 2024: Journal of Medical Virology
https://read.qxmd.com/read/38682578/epstein-barr-virus-driven-metabolic-alterations-contribute-to-the-viral-lytic-reactivation-and-tumor-progression-in-nasopharyngeal-carcinoma
#27
JOURNAL ARTICLE
Feng Shi, Li Shang, Min Zhou, Cong Lv, Yueshuo Li, Cheng Luo, Na Liu, Jingchen Lu, Min Tang, Xiangjian Luo, Jing Xu, Jia Fan, Jian Zhou, Qiang Gao, Weizhong Wu, Weihua Jia, Hailin Wang, Ya Cao
Metabolic reprogramming induced by Epstein-Barr virus (EBV) often mirrors metabolic changes observed in cancer cells. Accumulating evidence suggests that lytic reactivation is crucial in EBV-associated oncogenesis. The aim of this study was to explore the role of metabolite changes in EBV-associated malignancies and viral life cycle control. We first revealed that EBV (LMP1) accelerates the secretion of the oncometabolite D-2HG, and serum D-2HG level is a potential diagnostic biomarker for NPC. EBV (LMP1)-driven metabolite changes disrupts the homeostasis of global DNA methylation and demethylation, which have a significantly inhibitory effect on active DNA demethylation and 5hmC content...
May 2024: Journal of Medical Virology
https://read.qxmd.com/read/38682053/-in-vitro-evaluation-of-inhibitory-effect-of-lactobacillus-reuteri-supernatant-on-the-replication-of-herpes-simplex-virus-type-1-and-expression-of-ul54-ul52-and-ul27-genes
#28
JOURNAL ARTICLE
Faezeh Ebneali, Mohammad Shayestehpour, Ahmad Piroozmand, Hossein Sedaghat, Shaghayegh Yazdani, Zahrasadat Fateminasab
BACKGROUND AND OBJECTIVES: Human herpes virus type 1 (HSV-1) is a neurotropic pathogen that is infected more than 70% of the world population. The increasing of viral resistance to antiviral drugs and the emergence of side effects has motivated researchers to study the use of probiotics as new antiviral agents. The aim of the present study was to study for the first time the potential antiviral activity of Lactobacillus reuteri (L. reuteri) supernatant against HSV-1. MATERIALS AND METHODS: After measuring the cytotoxicity of L...
February 2024: Iranian Journal of Microbiology
https://read.qxmd.com/read/38680655/identifying-citrus-limonoids-as-a-potential-fusion-inhibitor-of-denv-2-virus-through-its-in-silico-study-and-ftir-analysis
#29
JOURNAL ARTICLE
Satyajit Das, Geetartha Sarma, Nithin J Panicker, Partha P Sahu
UNLABELLED: Dengue virus type 2 (DENV-2) is an arthropod-borne deadly RNA human pathogen transmitted through the mosquito Aedes. The DENV-2 roots viral infection by facilitating entry with its envelope glycoprotein to the receptor protein Dendritic-cell-specific ICAM3-grabbing non-integrin (DC-SIGN) through membrane fusion. Here, an organizational path is reported for inhibiting the transition due to fusion activation and by blocking the residues of the DC-SIGN-E-Glyco protein complex through citrus limonoids with its antiviral effect...
2024: In Silico Pharmacology
https://read.qxmd.com/read/38680609/sex-based-disparities-in-the-transition-to-dolutegravir-based-antiretroviral-therapy-in-west-african-hiv-cohorts
#30
JOURNAL ARTICLE
Thierry Tiendrebeogo, Karen Malateste, Armel Poda, Albert Minga, Eugene Messou, Henri Chenal, Oliver Ezechi, Didier K Ekouevi, Igho Ofotokun, Antoine Jaquet
Transition to dolutegravir among 21 167 individuals experienced in antiretroviral therapy in West Africa showed heterogeneous timelines and patterns. Initially reported sex disparities tended to catch up over time with persisting disparities, according to contributing HIV clinics. Key factors facilitating dolutegravir switch were male sex, age <50 years, viral suppression, and regimens not based on protease inhibitors.
May 2024: Open Forum Infectious Diseases
https://read.qxmd.com/read/38679165/ck1-and-pp1-regulate-rift-valley-fever-virus-genome-replication-through-l-protein-phosphorylation
#31
JOURNAL ARTICLE
Nicole Bracci, Alan Baer, Rafaela Flor, Kaylee Petraccione, Timothy Stocker, Weidong Zhou, Tatiana Ammosova, Rhoel R Dinglasan, Sergei Nekhai, Kylene Kehn-Hall
Rift Valley fever virus (RVFV) is an arbovirus in the Phenuiviridae family identified initially by the large 'abortion storms' observed among ruminants; RVFV can also infect humans. In humans, there is a wide variation of clinical symptoms ranging from subclinical to mild febrile illness to hepatitis, retinitis, delayed-onset encephalitis, or even hemorrhagic fever. The RVFV is a tri-segmented negative-sense RNA virus consisting of S, M, and L segments. The L segment encodes the RNA-dependent RNA polymerase (RdRp), termed the L protein, which is responsible for both viral mRNA synthesis and genome replication...
April 26, 2024: Antiviral Research
https://read.qxmd.com/read/38678857/pharmacokinetic-analysis-of-antiviral-drug-ritonavir-across-the-blood-brain-barrier-and-its-interaction-with-scutellaria-baicalensis-using-multisite-microdialysis-in-rats
#32
JOURNAL ARTICLE
Chung-Kai Sun, Yen-Ying Kung, Wan-Hsin Lee, Lie-Chwen Lin, Muh-Hwa Yang, Tung-Hu Tsai
Ritonavir, an excellent inhibitor of CYP3A4, has recently been combined with nirmatrelvir to form Paxlovid for the treatment of severe acute respiratory syndrome coronavirus 2 infections. The root of Scutellaria baicalensis Georgi (S. baicalensis), a traditional Chinese medicinal (TCM) herb commonly used to treat heat/inflammation in the lung and digestive tracts, which are major organs targeted by viral infections, contains flavones that can influence the CYP3A metabolism pathway. To investigate the ability of ritonavir to cross the bloodbrain barrier (BBB) and its potential herb-drug interactions with an equivalent TCM clinical dose of S...
April 18, 2024: Journal of Pharmaceutical and Biomedical Analysis
https://read.qxmd.com/read/38678688/sars-cov-2-diagnosis-in-saliva-samples-usefulness-and-limitations
#33
JOURNAL ARTICLE
María-Lucía Gutiérrez-Gómez, Zulema Ruíz, Fredy Gamboa, Nelly S Roa, Claudia Cardozo, Beatriz Ariza, Andrés Aristizábal, Andrés Lugo, Stevenson Bolívar, Daniel Henao, Dabeiba-Adriana García-Robayo
Saliva samples are important for diagnosis, because they are noninvasive and easy to acquire. The objective of this cross-sectional study was to investigate the value saliva samples have in detecting SARS-CoV-2 in comparison to nasal swabs and a new system named CovidCheck. A standard methodology identified the virus in 185 nasopharyngeal swabs and saliva samples revealing a sensitivity, specificity and positive and negative predictive values of 82,100,100 and 94.67%, respectively for saliva samples. Viral presence in saliva samples with the standard methodology in comparison to the CovidCheck system was evaluated in 67 samples with sensitivity, specificity and positive and negative predictive values of 68, 81, 68 and 81%, respectively...
April 19, 2024: Diagnostic Microbiology and Infectious Disease
https://read.qxmd.com/read/38676291/viral-kinetics-model-of-sars-cov-2-infection-informs-drug-discovery-clinical-dose-and-regimen-selection
#34
JOURNAL ARTICLE
Allison M Claas, Meelim Lee, Pai-Hsi Huang, Charles G Knutson, Domenico Bullara, Birgit Schoeberl, Suzanne Gaudet
Quantitative systems pharmacology (QSP) has been an important tool to project safety and efficacy of novel or repurposed therapies for the SARS-CoV-2 virus. Here, we present a QSP modeling framework to predict response to antiviral therapeutics with three mechanisms of action (MoA): cell entry inhibitors, anti-replicatives, and neutralizing biologics. We parameterized three distinct model structures describing virus-host interaction by fitting to published viral kinetics data of untreated COVID-19 patients...
April 26, 2024: Clinical Pharmacology and Therapeutics
https://read.qxmd.com/read/38675983/autophagy-deregulation-in-hiv-1-infected-cells-increases-extracellular-vesicle-release-and-contributes-to-tlr3-activation
#35
JOURNAL ARTICLE
Catherine DeMarino, Maria Cowen, Anastasia Williams, Pooja Khatkar, Fardokht A Abulwerdi, Lisa Henderson, Julia Denniss, Michelle L Pleet, Delores R Luttrell, Iosif Vaisman, Lance A Liotta, Joseph Steiner, Stuart F J Le Grice, Avindra Nath, Fatah Kashanchi
Human immunodeficiency virus type 1 (HIV-1) infection can result in HIV-associated neurocognitive disorder (HAND), a spectrum of disorders characterized by neurological impairment and chronic inflammation. Combined antiretroviral therapy (cART) has elicited a marked reduction in the number of individuals diagnosed with HAND. However, there is continual, low-level viral transcription due to the lack of a transcription inhibitor in cART regimens, which results in the accumulation of viral products within infected cells...
April 20, 2024: Viruses
https://read.qxmd.com/read/38675980/the-dual-targeted-fusion-inhibitor-clofazimine-binds-to-the-s2-segment-of-the-sars-cov-2-spike-protein
#36
JOURNAL ARTICLE
Matthew R Freidel, Pratiti A Vakhariya, Shalinder K Sardarni, Roger S Armen
Clofazimine and Arbidol have both been reported to be effective in vitro SARS-CoV-2 fusion inhibitors. Both are promising drugs that have been repurposed for the treatment of COVID-19 and have been used in several previous and ongoing clinical trials. Small-molecule bindings to expressed constructs of the trimeric S2 segment of Spike and the full-length SARS-CoV-2 Spike protein were measured using a Surface Plasmon Resonance (SPR) binding assay. We demonstrate that Clofazimine, Toremifene, Arbidol and its derivatives bind to the S2 segment of the Spike protein...
April 20, 2024: Viruses
https://read.qxmd.com/read/38675965/the-effects-of-endosomal-toll-like-receptor-inhibitors-in-an-ebv-dna-exacerbated-inflammatory-bowel-disease-mouse-model
#37
JOURNAL ARTICLE
Iman Karout, Zahraa Salhab, Nour Sherri, Elio R Bitar, Abdul Hamid Borghol, Hady Sabra, Aya Kassem, Omar Osman, Charbel Alam, Sabah Znait, Rayan Assaf, Sukayna Fadlallah, Abdo Jurjus, Jana G Hashash, Elias A Rahal
Epstein-Barr virus (EBV), a Herpesviridae family member, is associated with an increased risk of autoimmune disease development in the host. We previously demonstrated that EBV DNA elevates levels of the pro-inflammatory cytokine IL-17A and that inhibiting Toll-like receptor (TLR) 3, 7, or 9 reduces its levels. Moreover, this DNA exacerbated colitis in a mouse model of inflammatory bowel disease (IBD). In the study at hand, we examined whether inhibition of TLR3, 7, or 9 alleviates this exacerbation. Mice were fed 1...
April 17, 2024: Viruses
https://read.qxmd.com/read/38675962/applying-next-generation-sequencing-to-track-hiv-1-drug-resistance-mutations-circulating-in-portugal
#38
JOURNAL ARTICLE
Victor Pimentel, Marta Pingarilho, Cruz S Sebastião, Mafalda Miranda, Fátima Gonçalves, Joaquim Cabanas, Inês Costa, Isabel Diogo, Sandra Fernandes, Olga Costa, Rita Corte-Real, M Rosário O Martins, Sofia G Seabra, Ana B Abecasis, Perpétua Gomes
BACKGROUND: The global scale-up of antiretroviral treatment (ART) offers significant health benefits by suppressing HIV-1 replication and increasing CD4 cell counts. However, incomplete viral suppression poses a potential threat for the emergence of drug resistance mutations (DRMs), limiting ART options, and increasing HIV transmission. OBJECTIVE: We investigated the patterns of transmitted drug resistance (TDR) and acquired drug resistance (ADR) among HIV-1 patients in Portugal...
April 17, 2024: Viruses
https://read.qxmd.com/read/38675895/a-comparative-study-of-human-pluripotent-stem-cell-derived-macrophages-in-modeling-viral-infections
#39
COMPARATIVE STUDY
Yaxuan Zhang, Hui Qiu, Fuyu Duan, Haoran An, Huimin Qiao, Xingwu Zhang, Jing-Ren Zhang, Qiang Ding, Jie Na
Macrophages play multiple roles in innate immunity including phagocytosing pathogens, modulating the inflammatory response, presenting antigens, and recruiting other immune cells. Tissue-resident macrophages (TRMs) adapt to the local microenvironment and can exhibit different immune responses upon encountering distinct pathogens. In this study, we generated induced macrophages (iMACs) derived from human pluripotent stem cells (hPSCs) to investigate the interactions between the macrophages and various human pathogens, including the hepatitis C virus (HCV), severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and Streptococcus pneumoniae ...
April 1, 2024: Viruses
https://read.qxmd.com/read/38675853/development-and-validation-of-a-genotypic-assay-to-quantify-cxcr4-and-ccr5-tropic-human-immunodeficiency-virus-type-1-hiv-1-populations-and-a-comparison-to-trofile-%C3%A2
#40
COMPARATIVE STUDY
Daisy Ko, Sherry McLaughlin, Wenjie Deng, James I Mullins, Joan Dragavon, Socorro Harb, Robert W Coombs, Lisa M Frenkel
HIV-1 typically infects cells via the CD4 receptor and CCR5 or CXCR4 co-receptors. Maraviroc is a CCR5-specific viral entry inhibitor; knowledge of viral co-receptor specificity is important prior to usage. We developed and validated an economical V3- env Illumina-based assay to detect and quantify the frequency of viruses utilizing each co-receptor. Plasma from 54 HIV+ participants (subtype B) was tested. The viral template cDNA was generated from plasma RNA with unique molecular identifiers (UMIs). The sequences were aligned and collapsed by the UMIs with a custom bioinformatics pipeline...
March 27, 2024: Viruses
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