Indranil Paul, Dante Bolzan, Ahmed Youssef, Keith A Gagnon, Heather Hook, Gopal Karemore, Michael U J Oliphant, Weiwei Lin, Qian Liu, Sadhna Phanse, Carl White, Dzmitry Padhorny, Sergei Kotelnikov, Christopher S Chen, Pingzhao Hu, Gerald V Denis, Dima Kozakov, Brian Raught, Trevor Siggers, Stefan Wuchty, Senthil K Muthuswamy, Andrew Emili
A proper understanding of disease etiology will require longitudinal systems-scale reconstruction of the multitiered architecture of eukaryotic signaling. Here we combine state-of-the-art data acquisition platforms and bioinformatics tools to devise PAMAF, a workflow that simultaneously examines twelve omics modalities, i.e., protein abundance from whole-cells, nucleus, exosomes, secretome and membrane; N-glycosylation, phosphorylation; metabolites; mRNA, miRNA; and, in parallel, single-cell transcriptomes...
February 8, 2023: Nature Communications