keyword
https://read.qxmd.com/read/38652013/rectal-swab-dna-collection-protocol-for-pcr-genotyping-in-rats
#1
JOURNAL ARTICLE
Audrey E Kaye, Jacob W Proctor-Bonbright, Jai Y Yu
DNA collection is essential for genotyping laboratory animals. Common collection methods require tissue amputation, causing discomfort and injury. Rectal swabbing has been proposed as an effective, minimally invasive alternative, but an evidence-backed protocol for the technique remains unavailable. This report evaluates the effects of collection parameters on the quality of PCR results and presents a protocol for genotyping a litter of rats within 3-5 h. Samples with 2-8 scrapes produced enough DNA to amplify targets up to ∼1800 bp long using PCR...
April 23, 2024: BioTechniques
https://read.qxmd.com/read/38651269/accelerated-generation-of-gene-engineered-monoclonal-cho-cell-lines-using-fluidfm-nanoinjection-and-crispr-cas9
#2
JOURNAL ARTICLE
Justin S Antony, Anabel Migenda Herranz, Tahereh Mohammadian Gol, Susanne Mailand, Paul Monnier, Jennifer Rottenberger, Alicia Roig-Merino, Bettina Keller, Claudia Gowin, Maria Milla, Tobias A Beyer, Markus Mezger
Chinese hamster ovary (CHO) cells are the commonly used mammalian host system to manufacture recombinant proteins including monoclonal antibodies. However unfavorable non-human glycoprofile displayed on CHO-produced monoclonal antibodies have negative impacts on product quality, pharmacokinetics, and therapeutic efficiency. Glycoengineering such as genetic elimination of genes involved in glycosylation pathway in CHO cells is a viable solution but constrained due to longer timeline and laborious workflow. Here, in this proof-of-concept (PoC) study, we present a novel approach coined CellEDIT to engineer CHO cells by intranuclear delivery of the CRISPR components to single cells using the FluidFM technology...
April 2024: Biotechnology Journal
https://read.qxmd.com/read/38646817/genome-editing-of-a-recalcitrant-wine-grape-genotype-by-lipofectamine-mediated-delivery-of-crispr-cas9-ribonucleoproteins-to-protoplasts
#3
JOURNAL ARTICLE
Giorgio Gambino, Floriana Nuzzo, Amedeo Moine, Walter Chitarra, Chiara Pagliarani, Annalisa Petrelli, Paolo Boccacci, Andrea Delliri, Riccardo Velasco, Luca Nerva, Irene Perrone
The main bottleneck in the application of biotechnological breeding methods to woody species is due to the in vitro regeneration recalcitrance shown by several genotypes. On the other side, woody species, especially grapevine (Vitis vinifera L.), use most of the pesticides and other expensive inputs in agriculture, making the development of efficient approaches of genetic improvement absolutely urgent. Genome editing is an extremely promising technique particularly for wine grape genotypes, as it allows to modify the desired gene in a single step, preserving all the quality traits selected and appreciated in elite varieties...
April 22, 2024: Plant Journal
https://read.qxmd.com/read/38625797/protocol-for-large-dna-transgenesis-in-mice-using-the-cas9-bxb1-toolbox
#4
JOURNAL ARTICLE
Valerie Erhardt, Chrystal M Snow, Vishnu Hosur
Precise integration of DNA constructs greater than 3 kb into mouse zygotes is difficult. Here, we present a protocol for large DNA transgenesis in mice using the Cas9+Bxb1 toolbox. We describe steps for choosing mouse strains with preplaced attachment sites. We then detail procedures for microinjecting mouse zygotes with the plasmid donor DNA construct to generate transgenic mice by recombination-mediated cassette exchange. This protocol has the potential for application in exploring the functional implications of large structural variations in cancer...
April 14, 2024: STAR protocols
https://read.qxmd.com/read/38608228/zebrafish-as-versatile-model-for-assessing-animal-venoms-and-toxins-current-applications-and-future-prospects
#5
JOURNAL ARTICLE
Fajar Sofyantoro, Nur Indah Septriani, Donan Satria Yudha, Ega Adhi Wicaksono, Dwi Sendi Priyono, Wahyu Aristyaning Putri, Alfian Primahesa, Anita Restu Puji Raharjeng, Yekti Asih Purwestri, Tri Rini Nuringtyas
Animal venoms and toxins hold promise as sources of novel drug candidates, therapeutic agents, and biomolecules. To fully harness their potential, it is crucial to develop reliable testing methods that provide a comprehensive understanding of their effects and mechanisms of action. However, traditional rodent assays encounter difficulties in mimicking venom-induced effects in human due to the impractical venom dosage levels. The search for reliable testing methods has led to the emergence of zebrafish ( Danio rerio ) as a versatile model organism for evaluating animal venoms and toxins...
April 12, 2024: Zebrafish
https://read.qxmd.com/read/38606933/an-orthotopic-prostate-cancer-model-for-new-treatment-development-using-syngeneic-or-patient-derived-tumors
#6
JOURNAL ARTICLE
Naz Chaudary, E Wiljer, Warren Foltz, Pratibha Thapa, Richard P Hill, Michael Milosevic
BACKGROUND: There are limited preclinical orthotopic prostate cancer models due to the technical complexity of surgical engraftment and tracking the tumor growth in the mouse prostate gland. Orthotopic xenografts recapitulate the tumor microenvironment, tumor stromal interactions, and clinical behavior to a greater extent than xenografts grown at subcutaneous or intramuscular sites. METHODS: This study describes a novel micro-surgical technique for orthotopically implanting intact tumors pieces from cell line derived (transgenic adenocarcinoma mouse prostate [TRAMP]-C2) or patient derived (neuroendocrine prostate cancer [NEPC]) tumors in the mouse prostate gland and monitoring tumor growth using magnetic resonance (MR) imaging...
April 12, 2024: Prostate
https://read.qxmd.com/read/38606787/thirty-seven-years-of-mt1-and-mt2-melatonin-receptor-localization-in-the-brain-past-and-future-challenges
#7
REVIEW
Paul Klosen
Identifying the target cells of a hormone is a key step in understanding its function. Once the molecular nature of the receptors for a hormone has been established, researchers can use several techniques to detect these receptors. Here I will review the different tools used over the years to localize melatonin receptors and the problems associated with each of these techniques. The radioligand 2-[125 I] iodomelatonin was the first tool to allow localization of melatonin receptors on tissue sections. Once the MT1 and MT2 receptors were cloned, in situ hybridization could be used to detect the messenger RNA for these receptors...
April 2024: Journal of Pineal Research
https://read.qxmd.com/read/38606671/craniofacial-anomalies-in-schizophrenia-relevant-gfap-hmox1-0-12m-mice
#8
JOURNAL ARTICLE
Ayda Tavitian, Joseph Somech, Badrouyk Chamlian, Adrienne Liberman, Carmela Galindez, Hyman M Schipper
Subtle craniofacial dysmorphology has been reported in schizophrenia patients. This dysmorphology includes midline facial elongation, frontonasal anomalies and a sexually dimorphic deviation from normal directional asymmetry of the face, with male patients showing reduced and female patients showing enhanced facial asymmetry relative to healthy control subjects. GFAP.HMOX10-12m transgenic mice (Mus musculus) that overexpress heme oxygenase-1 in astrocytes recapitulate many schizophrenia-relevant neurochemical, neuropathological and behavioral features...
April 12, 2024: Anatomical Record: Advances in Integrative Anatomy and Evolutionary Biology
https://read.qxmd.com/read/38601306/leveraging-the-sugarcane-crispr-cas9-technique-for-genetic-improvement-of-non-cultivated-grasses
#9
REVIEW
Chunjia Li, Muhammad Aamir Iqbal
Under changing climatic scenarios, grassland conservation and development have become imperative to impart functional sustainability to their ecosystem services. These goals could be effectively and efficiently achieved with targeted genetic improvement of native grass species. To the best of our literature search, very scant research findings are available pertaining to gene editing of non-cultivated grass species (switch grass, wild sugarcane, Prairie cordgrass, Bermuda grass, Chinese silver grass, etc.) prevalent in natural and semi-natural grasslands...
2024: Frontiers in Plant Science
https://read.qxmd.com/read/38600337/regulatory-landscape-and-public-perception-for-gene-edited-bananas-in-the-southeast-asian-region
#10
JOURNAL ARTICLE
Nurzatil Sharleeza Mat Jalaluddin, Abdulah Al-Hadi Ahmad Fuaad, Rofina Yasmin Othman
Banana is a premier fruit crop in many parts of the world especially Southeast Asia. The demand for banana has contributed to significant national income to primary banana producers in the SEA region such as the Philippines, Indonesia, Thailand, Vietnam, and Malaysia. However, the widely traded banana industry is plagued by numerous threats including pests and diseases, post-harvest issues and extreme climate vulnerability. To address these challenges, new breeding techniques such as gene editing have been explored for breeding programs to develop improved banana varieties...
April 10, 2024: Transgenic Research
https://read.qxmd.com/read/38594944/accelerating-diverse-cell-based-therapies-through-scalable-design
#11
REVIEW
Emma L Peterman, Deon Ploessl, Kate E Galloway
Augmenting cells with novel, genetically encoded functions will support therapies that expand beyond natural capacity for immune surveillance and tissue regeneration. However, engineering cells at scale with transgenic cargoes remains a challenge in realizing the potential of cell-based therapies. In this review, we introduce a range of applications for engineering primary cells and stem cells for cell-based therapies. We highlight tools and advances that have launched mammalian cell engineering from bioproduction to precision editing of therapeutically relevant cells...
April 9, 2024: Annual Review of Chemical and Biomolecular Engineering
https://read.qxmd.com/read/38594617/a-chromosome-level-genome-assembly-of-the-soybean-pod-borer-insights-into-larval-transcriptional-response-to-transgenic-soybean-expressing-the-pesticidal-cry1ac-protein
#12
JOURNAL ARTICLE
Yangzhou Wang, Yao Yao, Yunyue Zhang, Xueyan Qian, Dongquan Guo, Brad S Coates
BACKGROUND: Genetically modified (GM) crop plants with transgenic expression of Bacillus thuringiensis (Bt) pesticidal proteins are used to manage feeding damage by pest insects. The durability of this technology is threatened by the selection for resistance in pest populations. The molecular mechanism(s) involved in insect physiological response or evolution of resistance to Bt is not fully understood. RESULTS: To investigate the response of a susceptible target insect to Bt, the soybean pod borer, Leguminivora glycinivorella (Lepidoptera: Tortricidae), was exposed to soybean, Glycine max, expressing Cry1Ac pesticidal protein or the non-transgenic parental cultivar...
April 9, 2024: BMC Genomics
https://read.qxmd.com/read/38590568/recent-development-of-oral-vaccines-review
#13
REVIEW
Ying Liu, Dominic Man-Kit Lam, Mei Luan, Wenfu Zheng, Hao Ai
Oral immunization can elicit an effective immune response and immune tolerance to specific antigens. When compared with the traditional injection route, delivering antigens via the gastrointestinal mucosa offers superior immune effects and compliance, as well as simplicity and convenience, making it a more optimal route for immunization. At present, various oral vaccine delivery systems exist. Certain modified bacteria, such as Salmonella , Escherichia coli and particularly Lactobacillus , are considered promising carriers for oral vaccines...
May 2024: Experimental and Therapeutic Medicine
https://read.qxmd.com/read/38588982/evaluation-of-novel-promoters-for-vascular-tissue-specific-gene-expression-in-populus
#14
JOURNAL ARTICLE
Yi An, Xue Jiao, Song Yang, Shiqi Wang, Ningning Chen, Lichao Huang, Cheng Jiang, Mengzhu Lu, Jin Zhang
Due to the extended generation cycle of trees, the breeding process for forest trees tends to be time-consuming. Genetic engineering has emerged as a viable approach to expedite the genetic breeding of forest trees. However, current genetic engineering techniques employed in forest trees often utilize continuous expression promoters such as CaMV 35S, which may result in unintended consequences by introducing genes into non-target tissues. Therefore, it is imperative to develop specific promoters for forest trees to facilitate targeted and precise design and breeding...
April 6, 2024: Plant Science: An International Journal of Experimental Plant Biology
https://read.qxmd.com/read/38588338/circular-rna-ath-circ032768-a-competing-endogenous-rna-response-the-drought-stress-by-targeting-mir472-rps5-module
#15
JOURNAL ARTICLE
Z Yin, Q Zhao, X Lv, X Zhang, Y Wu
CircRNAs (circular RNAs) reduce the abundance of miRNAs through ceRNA (competing endogenous RNA), to regulate many physiological processes and stress responses in plants. However, the role of circRNA in drought stress is poorly understood. Through ring identification and sequencing verification of ath-circ032768, bioinformatics analysis predicted the interaction of ath-circ032768-miR472-RPS5, and further obtained transgenic plants overexpressing ath-circ032768 and silencing STTM-miR472. The change in drought stress was analysed using biochemical and molecular biological methods...
April 8, 2024: Plant Biology
https://read.qxmd.com/read/38582963/talen-mediated-intron-editing-of-hspcs-enables-transgene-expression-restricted-to-the-myeloid-lineage
#16
JOURNAL ARTICLE
Eduardo Seclen, Jessica C Jang, Aminah O Lawal, Sylvain Pulicani, Alex Boyne, Diane Tkach, Alexandre Juillerat, Philippe Duchateau, Julien Valton
Gene therapy in hematopoietic stem and progenitor cells (HSPCs) shows great potential for the treatment of inborn metabolic diseases. Typical HSPC gene therapy approaches rely on constitutive promoters to express a therapeutic transgene, which is associated with multiple disadvantages. Here, we propose a novel promoter-less intronic gene editing approach that triggers transgene expression only after cellular differentiation into the myeloid lineage. We integrated a splicing-competent eGFP cassette into the first intron of CD11b and observed expression of eGFP in the myeloid lineage but minimal to no expression in HSPCs or differentiated non-myeloid lineages...
April 5, 2024: Molecular Therapy
https://read.qxmd.com/read/38578420/generation-of-connexin-expressing-stable-cell-pools
#17
JOURNAL ARTICLE
Abraham Tettey-Matey, Chiara Di Pietro, Viola Donati, Fabio Mammano, Daniela Marazziti
Stable cell pools have the advantage of providing a definite, consistent, and reproducible transmission of a transgene of interest, compared to transient expression from a plasmid transfection. Stably expressing a transgene of interest in cells under induction is a powerful way to (switch on and) study a gene function in both in vitro and in vivo assays. Taking advantage of the ability of lentivirus (LV) to promote transgene delivery, and genomic integration and expression in both dividing and nondividing cells, a doxycycline-inducible transfer vector expressing a bicistronic transgene was developed to study the function of connexins in HeLa DH cells...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38573428/the-spry-cas9-variant-release-the-pam-sequence-constraint-for-genome-editing-in-the-model-plant-physcomitrium-patens
#18
JOURNAL ARTICLE
Julie Calbry, Guillaume Goudounet, Florence Charlot, Anouchka Guyon-Debast, Pierre-François Perroud, Fabien Nogué
Genome editing via CRISPR/Cas has enabled targeted genetic modifications in various species, including plants. The requirement for specific protospacer-adjacent motifs (PAMs) near the target gene, as seen with Cas nucleases like SpCas9, limits its application. PAMless SpCas9 variants, designed with a relaxed PAM requirement, have widened targeting options. However, these so-call PAMless SpCas9 still show variation of editing efficiency depending on the PAM and their efficiency lags behind the native SpCas9...
April 4, 2024: Transgenic Research
https://read.qxmd.com/read/38566414/an-innate-immune-response-to-the-adeno-associated-virus-aav-genome-decreases-cortical-dendritic-complexity-and-disrupts-synaptic-transmission
#19
JOURNAL ARTICLE
Christos M Suriano, Neerav Kumar, Jessica L Verpeut, Jie Ma, Caroline Jung, Connor E Dunn, Brigett V Carvajal, Ai Vy Nguyen, Lisa M Boulanger
Recombinant adeno-associated viruses (AAVs) allow rapid and efficient gene delivery to the nervous system, are widely used in neuroscience research, and are the basis of FDA-approved neuron-targeting gene therapies. Here we find that an innate immune response to the AAV genome reduces dendritic length and complexity and disrupts synaptic transmission in mouse somatosensory cortex. Dendritic loss is apparent three weeks after injection of experimentally relevant viral titers, is not restricted to a particular capsid serotype, transgene, promoter, or production facility, and cannot be explained by responses to surgery or transgene expression...
April 1, 2024: Molecular Therapy
https://read.qxmd.com/read/38561589/the-r436q-missense-mutation-in-wwp1-disrupts-autoinhibition-of-its-e3-ubiquitin-ligase-activity-leading-to-self-degradation-and-loss-of-function
#20
JOURNAL ARTICLE
Michihiro Imamura, Hirokazu Matsumoto, Hideyuki Mannen, Shin'ichi Takeda, Yoshitsugu Aoki
Muscular dystrophy in the NH-413 chicken is caused by a missense mutation in the WWP1 gene. WWP1 is a HECT-type E3 ubiquitin ligase containing four tandem WW domains that interact with proline-rich peptide motifs of target proteins, and a short region connecting the second and third WW domains is crucial for the E3 ligase to maintain an autoinhibitory state. A mutation of the arginine in the WW2-WW3 linker to glutamine is thought to affect WWP1 function, but there is little information on this mutation to date...
April 1, 2024: In Vitro Cellular & Developmental Biology. Animal
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