keyword
https://read.qxmd.com/read/34880131/unraveling-the-genotype-by-environment-interaction-in-a-thermosensitive-fish-with-a-polygenic-sex-determination-system
#21
JOURNAL ARTICLE
Benjamin Geffroy, Mathieu Besson, Núria Sánchez-Baizán, Frederic Clota, Alexander Goikoetxea, Bastien Sadoul, François Ruelle, Marie-Odile Blanc, Hugues Parrinello, Sophie Hermet, Eva Blondeau-Bidet, Marine Pratlong, Francesc Piferrer, Marc Vandeputte, François Allal
In most animals, sex determination occurs at conception, when sex chromosomes are segregated following Mendelian laws. However, in multiple reptiles and fishes, this genetic sex can be overridden by external factors after fertilization or birth. In some species, the genetic sex may also be governed by multiple genes, further limiting our understanding of sex determination in such species. We used the European sea bass ( Dicentrarchus labrax ) as a model and combined genomic (using a single nucleotide polymorphism chip) and transcriptomic (RNA-Sequencing) approaches to thoroughly depict this polygenic sex determination system and its interaction with temperature...
December 14, 2021: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/34586733/histone-demethylase-jmjd1c-promotes-the-polarization-of-m1-macrophages-to-prevent-glioma-by-upregulating-mir-302a
#22
JOURNAL ARTICLE
Chuanhong Zhong, Bei Tao, Feilong Yang, Kaiguo Xia, Xiaobo Yang, Ligang Chen, Tangming Peng, Xiangguo Xia, Xianglong Li, Lilei Peng
Glioma is regarded as an aggressive lethal primary brain tumor. Jumonji domain containing 1C (JMJD1C) is a H3K9 demethylase which participates in the progression of various tumors, but its specific function and underlying mechanism in glioma development remain undefined, which is the purpose of our work. We initially assessed JMJD1C expression in glioma tissues and cells using the assays of RT-qPCR and immunohistochemistry. Meanwhile, the H3K9 level at the microRNA (miR)-302a promoter region was measured by chromatin immunoprecipitation assay, while luciferase-based reporter assay was performed for validation of the binding affinity between miR-302a and methyltransferase-like 3 (METTL3)...
September 2021: Clinical and Translational Medicine
https://read.qxmd.com/read/34475205/ar-negative-prostate-cancer-is-vulnerable-to-loss-of-jmjd1c-demethylase
#23
JOURNAL ARTICLE
Yohei Yoshihama, Kyle A LaBella, Eiru Kim, Lori Bertolet, Medina Colic, Jiexi Li, Xiaoying Shang, Chang-Jiun Wu, Denise J Spring, Y Alan Wang, Traver Hart, Ronald A DePinho
Prostate cancer is a leading cause of cancer-related mortality in men. The widespread use of androgen receptor (AR) inhibitors has generated an increased incidence of AR-negative prostate cancer, triggering the need for effective therapies for such patients. Here, analysis of public genome-wide CRISPR screens in human prostate cancer cell lines identified histone demethylase JMJD1C (KDM3C) as an AR-negative context-specific vulnerability. Secondary validation studies in multiple cell lines and organoids, including isogenic models, confirmed that small hairpin RNA (shRNA)-mediated depletion of JMJD1C potently inhibited growth specifically in AR-negative prostate cancer cells...
September 7, 2021: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/34368859/comparative-analysis-of-the-autism%C3%A2-related-variants-between-different-autistic-children-in-a-family-pedigree
#24
JOURNAL ARTICLE
Luxi Shen, Panyuan Li, Tianjin Zheng, Meichen Luo, Shao Zhang, Yuting Huang, Yongwu Hu, Hongzhi Li
The present study aimed to provide evidence for the genetic heterogeneity of familial autism spectrum disorder (ASD), which might help to improve our understanding of the complex polygenic basis of this disease. Whole‑exome sequencing (WES) was performed on two autistic children in a family pedigree, and reasonable conditions were set for preliminarily screening variant annotations. Sanger sequencing was used to verify the preliminarily screened variants and to determine the possible sources. In addition, autism‑related genes were screened according to autism databases, and their variants were compared between two autistic children...
October 2021: Molecular Medicine Reports
https://read.qxmd.com/read/34337532/genetic-susceptibility-for-low-testosterone-in-men-and-its-implications-in-biology-and-screening-data-from-the-uk-biobank
#25
JOURNAL ARTICLE
Richard J Fantus, Rong Na, Jun Wei, Zhuqing Shi, W Kyle Resurreccion, Joshua A Halpern, Omar Franco, Simon W Hayward, William B Isaacs, S Lilly Zheng, Jianfeng Xu, Brian T Helfand
Background: Despite strong evidence of heritability, few studies have attempted to unveil the genetic underpinnings of testosterone levels. Objective: To identify testosterone-associated loci in a large study and assess their biological and clinical implications. Design setting and participants: The participants were men from the UK Biobank. A two-stage genome-wide association study (GWAS) was first used to identify/validate loci for low testosterone (LowT, <8 nmol/l) in 80% of men ( N  = 148 902)...
July 2021: European urology open science
https://read.qxmd.com/read/34113620/prmt5-is-involved-in-spermatogonial-stem-cells-maintenance-by-regulating-plzf-expression-via-modulation-of-lysine-histone-modifications
#26
JOURNAL ARTICLE
Fangfang Dong, Min Chen, Min Chen, Lin Jiang, Zhiming Shen, Longfei Ma, Chunsheng Han, Xudong Guo, Fei Gao
Protein arginine methyltransferase 5 (PRMT5) catalyzes the formation of mono- or symmetric dimethylarginine residues on histones and non-histone substrates and has been demonstrated to play important roles in many biological processes. In the present study, we observed that PRMT5 is abundantly expressed in spermatogonial stem cells (SSCs) and that Prmt5 deletion results in a progressive loss of SSCs and male infertility. The proliferation of Prmt5 -deficient SSCs cultured in vitro exhibited abnormal proliferation, cell cycle arrest in G0/G1 phase and a significant increase in apoptosis...
2021: Frontiers in Cell and Developmental Biology
https://read.qxmd.com/read/34022910/circular-rna-circ_0006168-enhances-taxol-resistance-in-esophageal-squamous-cell-carcinoma-by-regulating-mir-194-5p-jmjd1c-axis
#27
JOURNAL ARTICLE
Fanyong Qu, Lina Wang, Caiyan Wang, Lingxia Yu, Kaikai Zhao, Hao Zhong
BACKGROUND: Chemoresistance is one of the major obstacles for cancer therapy in the clinic. Circular RNAs (circRNAs) are involved in the pathogenesis of esophageal squamous cell carcinoma (ESCC) and chemoresistance. This study aimed to explore the role and molecular mechanism of circ_0006168 in Taxol resistance of ESCC. METHODS: The expression levels of circ_0006168, microRNA-194-5p (miR-194-5p) and jumonji domain containing 1C (JMJD1C) were measured by quantitative real-time polymerase chain reaction (qRT-PCR) or western blot...
May 22, 2021: Cancer Cell International
https://read.qxmd.com/read/33705547/association-of-genetically-predicted-serum-estradiol-with-risk-of-thromboembolism-in-men-a-mendelian-randomization-study
#28
JOURNAL ARTICLE
Maria Nethander, Johan Quester, Liesbeth Vandenput, Claes Ohlsson
CONTEXT: An association was recently reported between genetic markers related to high testosterone and increased risk of thromboembolism in men but a possible causal role of estradiol for risk of thromboembolism in men remains unknown. OBJECTIVE: To determine whether endogenous estradiol has a causal role in thromboembolism in men. DESIGN: Two-sample mendelian randomization study using gene-based genetic instruments. SETTING: UK Biobank...
March 11, 2021: Journal of Clinical Endocrinology and Metabolism
https://read.qxmd.com/read/33591602/finding-underlying-genetic-mechanisms-of-two-patients-with-autism-spectrum-disorder-carrying-familial-apparently-balanced-chromosomal-translocations
#29
JOURNAL ARTICLE
Bayram Toraman, Samiye Çilem Bilginer, Selma Tural Hesapcioglu, Zeynep Göker, Hüseyin Okan Soykam, Bekir Ergüner, Tuba Dinçer, Gökhan Yildiz, Serbülent Ünsal, Burak Kaan Kasap, Sema Kandil, Ersan Kalay
BACKGROUND: Genetic etiologies of Autism Spectrum Disorders (ASD) are complex, and genetic factors identified so far are very diverse. In complex genetic diseases such as ASD, de novo or inherited chromosomal abnormalities are valuable findings for researchers in identifying the underlying genetic risk factors. With gene mapping studies on these chromosomal abnormalities, dozens of genes have been associated with ASD and other neurodevelopmental genetic diseases, so far. In this study, we aimed to find the causative genetic factors in patients with ASD that have apparently balanced chromosomal translocation in their karyotypes...
February 16, 2021: Journal of Gene Medicine
https://read.qxmd.com/read/33450964/differential-dna-methylation-in-prostate-tumors-from-puerto-rican-men
#30
JOURNAL ARTICLE
Gilberto Ruiz-Deya, Jaime Matta, Jarline Encarnación-Medina, Carmen Ortiz-Sanchéz, Julie Dutil, Ryan Putney, Anders Berglund, Jasreman Dhillon, Youngchul Kim, Jong Y Park
In 2020, approximately 191,930 new prostate cancer (PCa) cases are estimated in the United States (US). Hispanic/Latinos (H/L) are the second largest racial/ethnic group in the US. This study aims to assess methylation patterns between aggressive and indolent PCa including DNA repair genes along with ancestry proportions. Prostate tumors classified as aggressive ( n = 11) and indolent ( n = 13) on the basis of the Gleason score were collected. Tumor and adjacent normal tissue were annotated on H&E (Haemotoxylin and Eosin) slides and extracted by macro-dissection...
January 13, 2021: International Journal of Molecular Sciences
https://read.qxmd.com/read/33289299/modulators-of-histone-demethylase-jmjd1c-selectively-target-leukemic-stem-cells
#31
JOURNAL ARTICLE
Yong Yang, Xinjing Zhang, Xiaoyan Zhang, Yishu Wang, Xintong Wang, Linda Hu, Yao Zhao, Haihua Wang, Zhanju Wang, Haiying Wang, Lin Wang, Wilhelm G Dirks, Hans G Drexler, Xin Xu, Zhenbo Hu
Leukemic stem cells (LSCs) are a very rare cell population that result in the development of acute myeloid leukemia (AML). The selective targeting of drivers in LSCs with small molecule inhibitors holds promise for treatment of AML. Recently, we reported the identification of inhibitors of the histone lysine demethylase JMJD1C that preferentially kill MLL rearranged acute leukemia cells. Here, we report the identification of JMJD1C Jumomji domain Modulator 7 (JDM-7). Surface plasmon resonance (SPR) analysis showed that JDM-7 binds to JMJD1C and its family homolog JMJD1B...
December 1, 2020: FEBS Open Bio
https://read.qxmd.com/read/33285300/white-adipose-remodeling-during-browning-in-mice-involves-ybx1-to-drive-thermogenic-commitment
#32
JOURNAL ARTICLE
Atefeh Rabiee, Kaja Plucińska, Marie Sophie Isidor, Erin Louise Brown, Marco Tozzi, Simone Sidoli, Patricia Stephanie S Petersen, Marina Agueda-Oyarzabal, Silje Bøen Torsetnes, Galal Nazih Chehabi, Morten Lundh, Ali Altıntaş, Romain Barrès, Ole Nørregaard Jensen, Zachary Gerhart-Hines, Brice Emanuelli
OBJECTIVE: Increasing adaptive thermogenesis by stimulating browning in white adipose tissue is a promising way to improve metabolic health. However, the molecular mechanisms underlying this transition remain elusive. The aim of our study was to examine the molecular determinants driving the differentiation of precursor cells into thermogenic adipocytes. METHODS: Here, we performed temporal high-resolution proteomic analysis of subcutaneous white adipose tissue (scWAT) after cold exposure in mice...
December 5, 2020: Molecular Metabolism
https://read.qxmd.com/read/33076381/polymorphisms-in-gp6-pear1a-mrvi1-pik3cg-jmjd1c-and-shh-genes-in-patients-with-unstable-angina
#33
JOURNAL ARTICLE
Rafał Rudzik, Violetta Dziedziejko, Monika Ewa Rać, Marek Sawczuk, Agnieszka Maciejewska-Skrendo, Krzysztof Safranow, Andrzej Pawlik
INTRODUCTION: Coronary artery disease (CAD) is a significant public health problem because it is one of the major causes of death worldwide. Several studies have investigated the associations between CAD and polymorphisms in genes connected with platelet aggregation and the risk of venous thromboembolism. AIM: In this study, we examined the associations between polymorphisms in GP6 (rs1671152), PEAR1A (rs12566888), MRVI1 (rs7940646), PIK3CG (rs342286), JMJD1C (rs10761741), SHH (rs2363910), and CAD in the form of unstable angina as well as selected clinical and biochemical parameters...
October 15, 2020: International Journal of Environmental Research and Public Health
https://read.qxmd.com/read/33075016/jmjd1c-knockdown-affects-myeloid-cell-lines-proliferation-viability-and-gemcitabine-carboplatin-sensitivity
#34
JOURNAL ARTICLE
Vanessa Schimek, Niclas Björn, Lucia Pellé, Anna Svedberg, Henrik Gréen
OBJECTIVES: Chemotherapy-induced hematological toxicities are potentially life-threatening adverse drug reactions that vary between individuals. Recently, JMJD1C has been associated with gemcitabine/carboplatin-induced thrombocytopenia in non-small-cell lung cancer patients, making it a candidate marker for predicting the risk of toxicity. This study investigates if JMJD1C knockdown affects gemcitabine/carboplatin-sensitivity in cell lines. METHODS: Lentiviral transduction-mediated shRNA knockdown of JMJD1C in the cell lines K562 and MEG-01 were performed using shRNA#32 and shRNA#33...
October 16, 2020: Pharmacogenetics and Genomics
https://read.qxmd.com/read/32625104/the-histone-demethylase-jmjd1c-regulates-camkk2-ampk-signaling-to-participate-in-cardiac-hypertrophy
#35
JOURNAL ARTICLE
Shuang Yu, Yihong Li, Hongwei Zhao, Qingdong Wang, Ping Chen
The roles of the histone demethylase JMJD1C in cardiac hypertrophy remain unknown. JMJD1C was overexpressed in hypertrophic hearts of humans and mice, whereas the histone methylation was reduced. Jmjd1c knockdown repressed the angiotensin II (Ang II)-mediated increase in cardiomyocyte size and overexpression of hypertrophic genes in cardiomyocytes. By contrast, JMJD1C overexpression promoted the hypertrophic response of cardiomyocytes. Our further molecular mechanism study revealed that JMJD1C regulated AMP-dependent kinase (AMPK) in cardiomyocytes...
2020: Frontiers in Physiology
https://read.qxmd.com/read/32610558/the-potential-effect-of-aberrant-testosterone-levels-on-common-diseases-a-mendelian-randomization-study
#36
JOURNAL ARTICLE
Ali Alamdar Shah Syed, Lin He, Yongyong Shi
Testosterone has historically been linked to sexual dysfunction; however, it has recently been shown to affect other physical and mental attributes. We attempted to determine whether changes in serum testosterone could play a role in chronic or degenerative diseases. We used two separate genetic instruments comprising of variants from JMJD1C and SHBG regions and conducted a two-sample Mendelian randomization for type II diabetes (T2D), gout, rheumatoid arthritis (RA), schizophrenia, bipolar disorder, Alzheimer's disease and depression...
June 29, 2020: Genes
https://read.qxmd.com/read/32605929/crucial-functions-of-the-jmjd1-kdm3-epigenetic-regulators-in-cancer
#37
REVIEW
Yuan Sui, Ruicai Gu, Ralf Janknecht
Epigenetic changes are one underlying cause for cancer development and often due to dysregulation of enzymes modifying DNA or histones. Most Jumonji C domain-containing (JMJD) proteins are histone lysine demethylases (KDM) and therefore epigenetic regulators. One JMJD subfamily consists of JMJD1A/KDM3A, JMJD1B/KDM3B, and JMJD1C/KDM3C that are roughly 50% identical at the amino acid level. All three JMJD1 proteins are capable of removing dimethyl and monomethyl marks from lysine 9 on histone H3 and might also demethylate histone H4 on arginine 3 and nonhistone proteins...
January 2021: Molecular Cancer Research: MCR
https://read.qxmd.com/read/32122211/inhibition-of-histone-demethylase-jmjd1c-attenuates-cardiac-hypertrophy-and-fibrosis-induced-by-angiotensin-ii
#38
JOURNAL ARTICLE
Shenqian Zhang, Ying Lu, Chenyang Jiang
Pathological cardiac hypertrophy is a major risk factor for cardiovascular morbidity and mortality. Histone demethylases (KDMs) are emerging regulators of transcriptional reprograming in cancer, however, their potential role in abnormal heart growth and fibrosis remains largely unknown. The aim of this current study was to examine the role of JMJD1C, an H3K9me2 specific demethylase, in angiotensin II (Ang II) induced cardiac hypertrophy and fibrosis. In this study, we observed that Ang II could increase the expression of JMJD1C detected by Western blot and RT-qPCR in vitro and in vivo ...
March 3, 2020: Journal of Receptor and Signal Transduction Research
https://read.qxmd.com/read/32034158/histone-demethylase-jmjd1c-is-phosphorylated-by-mtor-to-activate-de-novo-lipogenesis
#39
JOURNAL ARTICLE
Jose A Viscarra, Yuhui Wang, Hai P Nguyen, Yoon Gi Choi, Hei Sook Sul
Fatty acid and triglyceride synthesis increases greatly in response to feeding and insulin. This lipogenic induction involves coordinate transcriptional activation of various enzymes in lipogenic pathway, including fatty acid synthase and glycerol-3-phosphate acyltransferase. Here, we show that JMJD1C is a specific histone demethylase for lipogenic gene transcription in liver. In response to feeding/insulin, JMJD1C is phosphorylated at T505 by mTOR complex to allow direct interaction with USF-1 for recruitment to lipogenic promoter regions...
February 7, 2020: Nature Communications
https://read.qxmd.com/read/32017785/jmjd1c-is-dispensable-for-healthy-adult-hematopoiesis-and-jak2v617f-driven-myeloproliferative-disease-initiation-in-mice
#40
JOURNAL ARTICLE
Hans F Staehle, Johannes Heinemann, Albert Gruender, Anne M Omlor, Heike Luise Pahl, Jonas Samuel Jutzi
The histone demethylase JMJD1C is overexpressed in patients with myeloproliferative neoplasms (MPNs) and has been implicated in leukemic stem cell function of MLL-AF9 and HOXA9-driven leukemia. In the emerging field of histone demethylase inhibitors, JMJD1C therefore became a potential target. Depletion of Jmjd1c expression significantly reduced cytokine-independent growth in an MPN cell line, indicating a role for JMJD1C in MPN disease maintenance. Here, we investigated a potential role for the demethylase in MPN disease initiation...
2020: PloS One
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