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JOURNAL ARTICLE
Alexander Bartholomäus, Julia Mitzscherling, Daniel Lipus, Dirk Wagner, Paris Lavin, Roberto Contreras, Rómulo Oses
The Gram-positive, rod-shaped endophytic bacterium Cellulomonas sp. strain ATA003 was isolated from the endemic cactus Maihueniopsis domeykoensis seeds collected in the Coastal Atacama Desert, Chile. Here, we present a circular genome with a size of 4,084,881 bp and a GC content of 73.8% obtained by Nanopore sequencing.
May 2, 2024: Microbiology Resource Announcements
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JOURNAL ARTICLE
Andrea Colautti, Marcello Civilini, Marinella Franchi, Antonella Felice, Stefano De Martin, Emanuele De Paoli, Michele Vidotto, Lucilla Iacumin
Legionnaires' disease is a severe form of pneumonia caused by Legionella spp. bacteria. According to the European Centre for Disease Prevention and Control, problems related to this pathogen showed a significant surge in recent years, making its monitoring critical.
May 1, 2024: Microbiology Resource Announcements
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JOURNAL ARTICLE
Rani Diana Sahni, Aravind V, Thangamani Suji, Annie Sheeba V, Selvin Theodore Jayanth
Yokenella regensburgei , an environmental organism, is an emerging pathogen in patients chiefly with immune suppression. We report the draft genome of Y. regensburgei , strain UU2206353, isolated from the urinary tract of an immunocompetent individual. The assembled genome consisted of 4,669,536 bp distributed over 20 contigs with 4,283 protein-coding genes.
April 30, 2024: Microbiology Resource Announcements
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JOURNAL ARTICLE
Eva Cea-Torrescassana, Thomas P Howard, Jem Stach, Maria Del Carmen Montero-Calasanz
Pseudomonas sp. CT364 was isolated from olive tree rhizosphere in Seville (Spain). We report its complete genome sequence, acquired by co-assembling Illumina and Nanopore reads. The genome comprises a circular chromosome of 6.2 Mbp and a G + C content of 60.0%. Taxonomic analyses confirmed it to be Pseudomonas granadensis .
April 30, 2024: Microbiology Resource Announcements
#25
JOURNAL ARTICLE
Emily Kunselman, Sarah Allard, Colleen Burge, Blythe Marshman, Alyssa Frederick, Jack Gilbert
The genome of " Candidatus Xenohaliotis californiensis" was assembled from shotgun metagenomic sequencing of experimentally infected white abalone. Ninety-one percent genome completeness was achieved with low contamination. Sequencing this genome provides the opportunity to track pathogen evolution over time, conduct gene expression experiments, and study dynamics between this pathogen and its phage.
April 30, 2024: Microbiology Resource Announcements
#26
JOURNAL ARTICLE
Cindy Kundlacz, Claudia Aldeia, Yasmine Eddoubaji, Edgar I Campos-Madueno, Andrea Endimiani
We present the complete genome sequence of Pseudomonas canadensis . The strain (Pcan-CK-23) was isolated from Zophobas morio (superworm) larvae. The genome consisted of a 6,424,469 bp chromosome with a GC content of 60.3% and 5,973 genes. Pcan-CK-23 can be used as a reference genome for further studies with P. canadensis .
April 30, 2024: Microbiology Resource Announcements
#27
JOURNAL ARTICLE
Yukiko Sassa-O'Brien, Chien-Fu Wu, Yasuhiko Matsushita, Kenji Ohya, Hiromitsu Moriyama, Hideto Fukushi
We report here the whole-genome sequence of the Chlamydia psittaci NRM_5 strain isolated from the fecal samples of wild Indian ring-necked parakeet ( Psittacula krameri manillensis ) in Japan. The sequence type is ST35, which is known to be associated with pigeons and doves, indicating the potential for transmission among bird species.
April 30, 2024: Microbiology Resource Announcements
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JOURNAL ARTICLE
Jinha Suh, Bridget O'Brien, Paul D Glenn Ii, Zhangbin Cai, France Daigle, Sébastien P Faucher, Jennifer Ronholm
Salmonella enterica is the etiological agent responsible for salmonellosis. Here, we report the draft whole genome sequences of 13 S . enterica subsp. enterica isolates from chickens and cows, as well as from previous Canadian Salmonella outbreaks investigated by the Canadian Food Inspection Agency.
April 30, 2024: Microbiology Resource Announcements
#29
JOURNAL ARTICLE
Madison M Clark, Nichole A Broderick
Chromobacterium subtsugae exhibits toxicity to Drosophila melanogaster , providing a new infection model to study host homeostasis. Previous studies using pathogen models have proven to be a useful tool to understand host physiology. Here, we report on the whole-genome sequences of these microbes obtained from short and long reads.
April 30, 2024: Microbiology Resource Announcements
#30
JOURNAL ARTICLE
Linan Jia, Mark A Arick Ii, Chuan-Yu Hsu, Daniel G Peterson, Jeffrey D Evans, Kelsy Robinson, Pratima Adhikari, Li Zhang
We report the whole-genome sequences of Escherichia coli strains APEC-O2-MS1266 and APEC-O2-MS1657 isolated from the liver and heart of infected broilers in Mississippi State, US. The genomic information of these two causative strains may provide a valuable reference for comparative studies of avian pathogenic E. coli .
April 30, 2024: Microbiology Resource Announcements
#31
JOURNAL ARTICLE
Bjørn Spilsberg, Hanne K Nilsen, Snorre Gulla, Karin Lagesen, Duncan J Colquhoun, Anne Berit Olsen
Thirteen bacterial isolates of Tenacibaculum maritimum were sequenced and assembled. The strains were isolated from four disease outbreaks in farmed marine fish in Norway. Eight isolates were from Cyclopterus lumpus (lumpfish), and five were from Scophthalmus maximus (turbot). Overall, sequence similarity did not correlate with host species or geographic location.
April 30, 2024: Microbiology Resource Announcements
#32
JOURNAL ARTICLE
Jiahao Li, Xiuyun Wu, Jing Meng
Bacillus cereus, a class of facultative aerobic gram-positive bacteria, is frequently isolated from soil, growing plants, and the intestinal tract of insects and mammals. Here, we report the complete genome sequence of B. cereus A01, whose total genome length is 6,097,808 bp, with a GC content of 34.92%.
April 30, 2024: Microbiology Resource Announcements
#33
JOURNAL ARTICLE
Lakshmanan Vighnesh, Uppada Jagadeeshwari, Chintalapati Sasikala, Chintalapati Venkata Ramana
Here, we report a 22.1-Mbp genome sequence of microcolonial fungi, Zalaria obscura , isolated from a pine tree bark. The microbiome of the new fungi is predicted to be largely associated with Acidobacteriota . The genome sequence of Zalaria obscura will help us in understanding the unusual relationship with Acidobacteriota member(s).
April 30, 2024: Microbiology Resource Announcements
#34
JOURNAL ARTICLE
Michio Jinnai, Takahiro Yamaguchi, Doan Tran Nguyen Minh, Oanh Nguyen Hoang, Hien Le Thi, Phong Ngo Thanh, Phuong Hoang Hoai, Phuc Nguyen Do, Chinh Dang Van, Yuko Kumeda, Astushi Hase, Tatsuya Nakayama
Extended-spectrum β-lactamase-producing Atlantibacter hermannii was isolated from an edible river fish, Anabas testudineus , which was sold in a market located in Vietnam. The genome sequence was obtained by using next-generation sequencing, which involved Oxford Nanopore and Illumina technologies. The 92 kb plasmid encodes the gene bla CTX-M-27 .
April 30, 2024: Microbiology Resource Announcements
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JOURNAL ARTICLE
Hannah V Zima, Braham Dhillon, Chunda Feng, Bo Liu, Maria I Villarroel-Zeballos, Burt H Bluhm, James C Correll
Four isolates of Neofusicoccum parvum , collected from diseased hemp ( Cannabis sativa ) plants over a period of 2 years and shown to be pathogenic on C. sativa, were examined in this study. Their genome sizes ranged between 42.8 and 44.4 Mb, with 16,499 ± 72 predicted genes across the four isolates.
April 29, 2024: Microbiology Resource Announcements
#36
JOURNAL ARTICLE
Kurt Gemeinhardt, Hyojung Park, Jong In Won, Jin Hyung Lee, Ee Taek Hwang, Largus T Angenent, Byoung Seung Jeon
Here, we report the draft genome of Magnusiomyces sp. LA-1, which was isolated from a C6-C8 carboxylic acid-producing bioreactor. The draft genome of Magnusiomyces sp. LA-1 is 19,829,165 bp in length, is divided into six contigs that comprise 6,557 CDS regions, and has a GC content of 34.5%.
April 29, 2024: Microbiology Resource Announcements
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JOURNAL ARTICLE
Sabrina A Attéré, Laurie C Piché, Laurent Intertaglia, Raphaël Lami, Steve J Charette, Antony T Vincent
Streptomycin thallous acetate actidione medium is typically used to isolate Brochothrix thermosphacta bacteria from food. Using this medium, three bacterial strains were isolated from the environment. Genomic sequences demonstrated that these bacteria are of the genera Lysinibacillus and Paenibacillus and are of biotechnological interest.
April 29, 2024: Microbiology Resource Announcements
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JOURNAL ARTICLE
Anika Tahsin, Mahin Hasan, Saikt Rahman, Mohammad Jubair, Mokibul Hassan Afrad, Manjur Hossain Khan, Md Shaheen Alam, Mst Noorjahan Begum, Md Yeasir Karim, Sharmin Aktar Mukta, Mohammad Tanbir Habib, Ahmed Nawsher Alam, Emran Kabir Chowdhury, Md Rofiqur Rahman, Edward T Ryan, Tahmina Shirin, Mustafizur Rahman, Firdausi Qadri
We report 18 coding-complete genome sequences of emerging SARS-CoV-2 Omicron sub-lineages JN.1, JN.1.4, and JN.1.11 from Bangladesh. Nasopharyngeal swab samples were obtained from individuals with COVID-19 symptoms between December 2023 and January 2024. Whole genome sequencing was performed following the ARTIC Network-based protocol using Oxford Nanopore Technology.
April 24, 2024: Microbiology Resource Announcements
#39
JOURNAL ARTICLE
Mark Milhaven, Heba A Bakry, Anuvi Batra, Amanda M Bermingham, Gloria Grama, Jacob Kebe, Shawn S Martinez, Rishika V Mudunuri, Megan R Nelson, Evie T Nguyen, Mia M Peterson, Alexis Pruitt, Kristan Tran, Akarshi Brar, Gabriella Cerna, Elaine Chaffee, Steven M Caruso, Susanne P Pfeifer
Amabiko is a lytic subcluster BE2 bacteriophage that infects Streptomyces scabiei -a bacterium causing common scab in potatoes. Its 131,414 bp genome has a GC content of 49.5% and contains 245 putative protein-coding genes, 45 tRNAs, and one tmRNA. Amabiko is closely related to Streptomyces bacteriophage MindFlayer (gene content similarity: 86.5%).
April 23, 2024: Microbiology Resource Announcements
#40
JOURNAL ARTICLE
Dana Marchesin-Cupello, Gabriel Roscales, Paula Cobeta, Ruben Chaboy-Cansado, Daniel Aguirre de Cárcer, Alberto Rastrojo
The isolation and characterization of additional phages is crucial for adding reliable viral sequences with relevant biological information to viral databases. In this study, we present the complete genomes of two Arthrobacter phages obtained from different soil samples.
April 23, 2024: Microbiology Resource Announcements
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