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Journal of Personalized Medicine

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https://read.qxmd.com/read/31117188/assessing-the-joint-value-of-genomic-based-diagnostic-tests-and-gene-therapies
#1
Sean P Gavan, Christine Y Lu, Katherine Payne
Gene therapy is an emerging type of treatment that may aim to provide a cure to individuals with a genetic mutation known to be causative of a specific disease. A diagnosis of the causative mutation must precede treatment with a in vivo gene therapy. Both achieving a genomic-based diagnosis and treatment with a gene therapy may result in substantial expenditures for health care systems. Uncertainties around the health care costs, risks, and benefits derived from diagnosis and treatment with a subsequent gene therapy suggests a need for developing an evidence base, underpinned by opportunity cost, to inform if, and how, these health technologies should be introduced into health care systems funded by finite budgets...
May 21, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/31083288/exploring-predictors-of-genetic-counseling-and-testing-for-hereditary-breast-and-ovarian-cancer-findings-from-the-2015-u-s-national-health-interview-survey
#2
Caitlin G Allen, Megan Roberts, Yue Guan
Despite efforts to increase the availability of clinical genetic testing and counseling for Hereditary Breast and Ovarian (HBOC)-related cancers, these services remain underutilized in clinical settings. There have been few efforts to understand the public's use of cancer genetic services, particularly for HBOC-related cancers. This analysis is based on data from the 2015 National Health Interview Survey (NHIS), a U.S.-based nationwide probability sample, to better understand the public's use of HBOC-related clinical cancer genetic services...
May 10, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/31075859/direct-to-consumer-genetic-testing-data-privacy-key-concerns-and-recommendations-based-on-consumer-perspectives
#3
Rachele M Hendricks-Sturrup, Christine Y Lu
Direct-to-consumer genetic testing (DTC-GT) companies are engaging health consumers in unprecedented ways and leveraging the genetic information they collect to further engage health companies. This has produced controversy about DTC-GT consumer expectations, standards, and perceptions of privacy. In this commentary, we highlight recent events involving DTC-GT companies and controversy about privacy that followed those events and discuss recent studies that have explored DTC-GT consumer concerns about privacy...
May 9, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/31067780/clinical-and-prognostic-significance-of-cell-sensitivity-to-chemotherapy-detected-in-vitro-on-treatment-response-and-survival-of-leukemia-patients
#4
Maria Kolesnikova, Aleksandra Sen'kova, Sofia Tairova, Viktor Ovchinnikov, Tatiana Pospelova, Marina Zenkova
Multidrug resistance (MDR) is a major challenge in leukemia treatment. The objective of this study was to identity predictors of MDR to allow for rapid and economical assessment of the efficacy of planned antitumor therapy for leukemia patients. The study included 113 patients with acute and chronic leukemias. Prior to antitumor therapy, we measured the sensitivity of tumor cells of patients to the panel of chemotherapeutic drugs, together with MDR1 mRNA and P-glycoprotein (P-gp) expression as one of the mechanisms of MDR, and compared these data with the response to therapy...
May 7, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/31060343/feasibility-of-a-comprehensive-home-monitoring-program-for-sarcoidosis
#5
Catharina C Moor, Yasmin Gür-Demirel, Marlies S Wijsenbeek
Sarcoidosis is a chronic, heterogeneous disease which most commonly affects the lungs. Currently, evidence-based and individually tailored treatment options in sarcoidosis are lacking. We aimed to evaluate patient experiences with a home monitoring program for sarcoidosis and assess whether home monitoring is a feasible tool to enhance personalized treatment. Outpatients with pulmonary sarcoidosis tested the home monitoring program "Sarconline" for one month. This is a secured personal platform which consists of online patient-reported outcomes, real-time wireless home spirometry, an activity tracker, an information library, and an eContact option...
May 5, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/31052247/pharmacogenetic-tests-in-reducing-accesses-to-emergency-services-and-days-of-hospitalization-in-bipolar-disorder-a-2-year-mirror-analysis
#6
Camilla Callegari, Celeste Isella, Ivano Caselli, Nicola Poloni, Marta Ielmini
Despite the enormous costs associated to mood disorders', few studies evaluate potential cost saving from the use of pharmacogenetic tests (PGT). This study compares 12 months before the execution of the PGT versus 12 months after, in terms of number and days of hospitalization and accesses to emergency services, in a sample of 30 patients affected by bipolar disorder. Secondarily, the study gives an economic value to the data based on the diagnosis-related group (DRG). Patients included in the study were required to be aged ≥18 years, sign an informed consent, have a score of Clinical Global Impression item Severity (CGIs) ≥3, and have a discordant therapy compared to the PGT in the 12 months preceding it and a therapy consistent with it for the following 12 months...
April 30, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/31032818/the-transcriptomic-toolbox-resources-for-interpreting-large-gene-expression-data-within-a-precision-medicine-context-for-metabolic-disease-atherosclerosis
#7
Caralina Marín de Evsikova, Isaac D Raplee, John Lockhart, Gilberto Jaimes, Alexei V Evsikov
As one of the most widespread metabolic diseases, atherosclerosis affects nearly everyone as they age; arteries gradually narrow from plaque accumulation over time reducing oxygenated blood flow to central and periphery causing heart disease, stroke, kidney problems, and even pulmonary disease. Personalized medicine promises to bring treatments based on individual genome sequencing that precisely target the molecular pathways underlying atherosclerosis and its symptoms, but to date only a few genotypes have been identified...
April 29, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/31035449/inflammation-biomarkers-and-immuno-oncology-pathways-in-pancreatic-cancer
#8
Belinda Lee, Peter Gibbs
It is estimated that pancreatic cancer will be the second leading cause of cancer-related deaths globally by 2030, highlighting the ongoing lack of effective treatment options for this devastating condition. There is a lack of reliable prognostic or predictive markers in pancreatic cancer to guide management decisions, whether for systemic chemotherapy, molecularly targeted therapies, or immunotherapies. To date, the results for targeted agents and immunotherapies in unselected populations of chemo-refractory pancreatic cancer have not met expectations...
April 26, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/31013571/a-tool-for-shared-decision-making-on-referral-for-prostate-biopsy-in-the-primary-care-setting-integrating-risks-of-cancer-with-life-expectancy
#9
Jan F M Verbeek, Daan Nieboer, Chris Parker, Michael W Kattan, Ewout W Steyerberg, Monique J Roobol
Prostate cancer (PCa) testing involves a complex individually based decision making process. It should consider competing risks from other comorbidities when estimating a survival benefit from the early detection of clinically significant (cs)PCa. We aimed to develop a prediction tool that provides concrete advice for the general practitioner (GP) on whether to refer a man for further assessment. We hereto combined the probability of detecting csPCa and the potential overall survival benefit from early detection and treatment...
April 22, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30987214/aligning-the-aligners-comparison-of-rna-sequencing-data-alignment-and-gene-expression-quantification-tools-for-clinical-breast-cancer-research
#10
Isaac D Raplee, Alexei V Evsikov, Caralina Marín de Evsikova
The rapid expansion of transcriptomics and affordability of next-generation sequencing (NGS) technologies generate rocketing amounts of gene expression data across biology and medicine, including cancer research. Concomitantly, many bioinformatics tools were developed to streamline gene expression and quantification. We tested the concordance of NGS RNA sequencing (RNA-seq) analysis outcomes between two predominant programs for read alignment, HISAT2, and STAR, and two most popular programs for quantifying gene expression in NGS experiments, edgeR and DESeq2, using RNA-seq data from breast cancer progression series, which include histologically confirmed normal, early neoplasia, ductal carcinoma in situ and infiltrating ductal carcinoma samples microdissected from formalin fixed, paraffin embedded (FFPE) breast tissue blocks...
April 3, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30934600/metformin-pharmacogenetics-effects-of-slc22a1-slc22a2-and-slc22a3-polymorphisms-on-glycemic-control-and-hba1c-levels
#11
Laith N Al-Eitan, Basima A Almomani, Ahmad M Nassar, Barakat Z Elsaqa, Nesreen A Saadeh
Type 2 diabetes mellitus (T2DM) constitutes a major portion of Jordan's disease burden, and incidence rates are rising at a rapid rate. Due to variability in the drug's response between ethnic groups, it is imperative that the pharmacogenetics of metformin be investigated in the Jordanian population. The objective of this study was to investigate the relationship between twenty-one single nucleotide polymorphisms (SNPs) in the SLC22A1 , SLC22A2 , and SLC22A3 genes and their effects on metformin pharmacogenetics in Jordanian patients diagnosed with type 2 diabetes mellitus...
March 25, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30836656/mutation-based-therapeutic-strategies-for-duchenne-muscular-dystrophy-from-genetic-diagnosis-to-therapy
#12
REVIEW
Akinori Nakamura
Duchenne and Becker muscular dystrophy (DMD/BMD) are X-linked muscle disorders caused by mutations of the DMD gene, which encodes the subsarcolemmal protein dystrophin. In DMD, dystrophin is not expressed due to a disruption in the reading frame of the DMD gene, resulting in a severe phenotype. Becker muscular dystrophy exhibits a milder phenotype, having mutations that maintain the reading frame and allow for the production of truncated dystrophin. To date, various therapeutic approaches for DMD have been extensively developed...
March 4, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30832243/genetic-testing-to-guide-risk-stratified-screens-for-breast-cancer
#13
REVIEW
Ava Willoughby, Paul R Andreassen, Amanda Ewart Toland
Breast cancer screening modalities and guidelines continue to evolve and are increasingly based on risk factors, including genetic risk and a personal or family history of cancer. Here, we review genetic testing of high-penetrance hereditary breast and ovarian cancer genes, including BRCA1 and BRCA2 , for the purpose of identifying high-risk individuals who would benefit from earlier screening and more sensitive methods such as magnetic resonance imaging. We also consider risk-based screening in the general population, including whether every woman should be genetically tested for high-risk genes and the potential use of polygenic risk scores...
March 1, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30781705/autonomy-challenges-in-epigenetic-risk-stratified-cancer-screening-how-can-patient-decision-aids-support-informed-consent
#14
REVIEW
Maaike Alblas, Maartje Schermer, Yvonne Vergouwe, Ineke Bolt
Information of an individual's epigenome can be useful in cancer screening to enable personalised decision making on participation, treatment options and further screening strategies. However, adding this information might result in complex risk predictions on multiple diseases, unsolicited findings and information on (past) environmental exposure and behaviour. This complicates informed consent procedures and may impede autonomous decision-making. In this article we investigate and identify the specific features of epigenetic risk-stratified cancer screening that challenge the current informed consent doctrine...
February 18, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30781516/the-association-between-plasma-omega-6-omega-3-ratio-and-anthropometric-traits-differs-by-racial-ethnic-groups-and-nfkb1-genotypes-in-healthy-young-adults
#15
Jeremy Bauman-Fortin, David W L Ma, David M Mutch, Salma A Abdelmagid, Alaa Badawi, Ahmed El-Sohemy, Bénédicte Fontaine-Bisson
Evidence for a relationship between omega-6/omega-3 (n-6/n-3) polyunsaturated fatty acid (PUFA) ratio and obesity in humans is inconsistent, perhaps due to differences in dietary intake or metabolism of PUFAs between different subsets of the population. Since chronic inflammation is central to obesity and inflammatory pathways are regulated by PUFAs, the objective of this study was to examine whether variants in the NFKB1 gene, an upstream regulator of the inflammatory response, modify the association between the n-6/n-3 ratio (from diet and plasma) and anthropometric traits in a multiethnic/multiracial population of young adults...
February 16, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30736475/the-developing-story-of-predictive-biomarkers-in-colorectal-cancer
#16
REVIEW
Stergios Boussios, Mehmet Akif Ozturk, Michele Moschetta, Afroditi Karathanasi, Nikolaos Zakynthinakis-Kyriakou, Konstantinos H Katsanos, Dimitrios K Christodoulou, Nicholas Pavlidis
Colorectal cancer (CRC) is the third most common malignancy worldwide. Surgery remains the most important treatment for non-metastatic CRC, and the administration of adjuvant chemotherapy depends mainly on the disease stage, which is still the strongest prognostic factor. A refined understanding of the genomics of CRC has recently been achieved thanks to the widespread use of next generation sequencing with potential future therapeutic implications. Microsatellite instability (MSI) has been suggested as a predictive marker for response to anti-programmed-cell-death protein 1 (PD-1) therapy in solid tumors, including CRC...
February 7, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30764585/the-interaction-between-genetic-polymorphisms-in-fto-and-tcf7l2-genes-and-dietary-intake-with-regard-to-body-mass-and-composition-an-exploratory-study
#17
Lara Nasreddine, Reem Akika, Aurelie Mailhac, Hani Tamim, Nathalie Khoueiry Zgheib
In contrast to the large number of genetic studies on obesity, there has been significantly less nutrigenetics investigation of the interaction between diet and single nucleotide polymorphisms (SNPs) in obesity, especially within Eastern Mediterranean populations. The aim of this study was to evaluate the potential interactions between three candidate SNPs, namely, rs1558902 and rs9939609 in the fat mass and obesity ( FTO) gene and the rs7903146 variant of the Transcription factor 7 like 2 ( TCF7L2) gene, and macronutrient intake with regard to obesity, body fat, and muscle composition...
February 5, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30717290/varifi-web-based-automatic-variant-identification-filtering-and-annotation-of-amplicon-sequencing-data
#18
Milica Krunic, Peter Venhuizen, Leonhard Müllauer, Bettina Kaserer, Arndt von Haeseler
Fast and affordable benchtop sequencers are becoming more important in improving personalized medical treatment. Still, distinguishing genetic variants between healthy and diseased individuals from sequencing errors remains a challenge. Here we present VARIFI, a pipeline for finding reliable genetic variants (single nucleotide polymorphisms (SNPs) and insertions and deletions (indels)). We optimized parameters in VARIFI by analyzing more than 170 amplicon-sequenced cancer samples produced on the Personal Genome Machine (PGM)...
February 1, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30717118/understanding-implementation-challenges-to-genetic-testing-for-familial-hypercholesterolemia-in-the-united-states
#19
Rachele M Hendricks-Sturrup, Christine Y Lu
Cardiovascular disease (CVD) is the leading cause of death in the United States (US), with familial hypercholesterolemia (FH) being a major inherited and genetic risk factor for premature CVD and atherosclerosis. Genetic testing has helped patients and providers confirm the presence of known pathogenic and likely pathogenic variations in FH-associated genes. Key organizations, such as the Centers for Disease Control and Prevention (CDC), American Heart Association (AHA), FH Foundation, and National Lipid Association (NLA), have recognized the clinical utility of FH genetic testing...
February 1, 2019: Journal of Personalized Medicine
https://read.qxmd.com/read/30682871/personalized-assessment-of-the-coronary-atherosclerotic-arteries-by-intravascular-ultrasound-imaging-hunting-the-vulnerable-plaque
#20
REVIEW
Theodore G Papaioannou, Charalampos Kalantzis, Efstratios Katsianos, Despina Sanoudou, Manolis Vavuranakis, Dimitrios Tousoulis
The term "vulnerable plaque" is commonly used to refer to an atherosclerotic plaque that is prone to rupture and the formation of thrombosis, which can lead to several cardiovascular and cerebrovascular events. Coronary artery atherosclerosis has a wide variety of different phenotypes among patients who may have a substantially variable risk for plaque rupture and cardiovascular events. Mounting evidence has proposed three distinctive histopathological mechanisms: plaque rupture, plaque erosion and calcified nodules...
January 24, 2019: Journal of Personalized Medicine
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