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JOURNAL ARTICLE
Ingerid Ø Kirkeleite, Jon Bohlin, Lonneke Scheffer, Einar T Weme, Didrik F Vestrheim
We report here the draft genome sequence of a Streptococcus species belonging to the S. mitis group. While a clear species identification cannot be made for the isolate, it appears that its most recent common ancestor is the species S. pseudopneumoniae .
June 28, 2018: Genome Announcements
#22
JOURNAL ARTICLE
Ira Handayani, Shanti Ratnakomala, Puspita Lisdiyanti, Fahrurrozi, Mohammad Alanjary, Wolfgang Wohlleben, Yvonne Mast
The strain Streptomyces sp. BSE7F, a novel Streptomyces strain isolated from Indonesian mangrove sediment, displays antimicrobial activities against Gram-positive bacteria, Gram-negative bacteria, and yeast. Bioinformatic analysis of the genome sequence revealed the occurrence of 22 biosynthetic gene clusters disclosing the secondary metabolite capacity of strain BSE7F.
June 28, 2018: Genome Announcements
#23
JOURNAL ARTICLE
Enes Dertli, Christopher D Skory, Ömer Şimşek
A high level of variation in microflora can be observed in profiles of lactic acid bacteria (LAB) from sourdoughs. Here, we present draft genome sequences of Lactobacillus reuteri E81, L. reuteri LR5A, L. rhamnosus LR2, L. plantarum PFC-311, and the novel Lactobacillus sp. strain PFC-70, isolated from traditional Turkish backslopped wheat sourdoughs.
June 28, 2018: Genome Announcements
#24
JOURNAL ARTICLE
Virginie Galeote, Frédéric Bigey, Hugo Devillers, Raúl A Ortiz-Merino, Sylvie Dequin, Kenneth H Wolfe, Cécile Neuvéglise
We report here the genome sequence of the ascomycetous yeast Torulaspora microellipsoides CLIB 830T A reference genome for this species, which has been found as a donor of genetic material in wine strains of Saccharomyces cerevisiae , will undoubtedly give clues to our understanding of horizontal transfer mechanisms between species in the wine environment.
June 28, 2018: Genome Announcements
#25
JOURNAL ARTICLE
Jin-Ju Jeong, Mee Kyung Sang, Duleepa Pathiraja, Byeonghyeok Park, In-Geol Choi, Ki Deok Kim
Chryseobacterium sp. strain ISE14 is a phosphate-solubilizing endophytic bacterium that exhibits plant growth promotion and biocontrol activities against Phytophthora blight and anthracnose on pepper. Here, we report the draft genome sequence of strain ISE14, which contains genes relating to phosphate solubilization, plant growth promotion, and biocontrol traits.
June 28, 2018: Genome Announcements
#26
JOURNAL ARTICLE
Shinya Monno, Hidehiro Sugiura, Hazuki Yamashita, Yusuke Kato, Kazuyuki Morimitu, Masayuki Imajoh
Vibrio harveyi strain GAN1709 was isolated from a diseased greater amberjack farmed in Nomi Bay, Japan. Here, we report the draft genome sequence of this strain, which comprises 6,265,473 bp, with a G+C content of 44.8%.
June 28, 2018: Genome Announcements
#27
JOURNAL ARTICLE
Tammy J Barnaba, Jayanthi Gangiredla, Mark K Mammel, David W Lacher, Christopher A Elkins, Keith A Lampel, Chris A Whitehouse, Carmen Tartera
Here, we present the genome sequences of 23 Bifidobacterium isolates from several commercially available dietary supplements and cultured food products. Strains of this genus are natural inhabitants of the mammalian mouth, gastrointestinal tract, and vagina. Some species are considered beneficial to human health.
June 28, 2018: Genome Announcements
#28
JOURNAL ARTICLE
Leda Restrepo, Alejandro Reyes, Leandro Bajaña, Irma Betancourt, Bonny Bayot
White spot syndrome virus (WSSV) is the most devastating viral disease affecting cultivated shrimp around the world. Currently, there is no reported genetic information on WSSV affecting Penaeus vannamei in Ecuador. Therefore, we determined the genome of a WSSV isolate from shrimp and compared it with the genomes of isolates from other geographical locations.
June 28, 2018: Genome Announcements
#29
JOURNAL ARTICLE
Momota Potshangbam, Dinabandhu Sahoo, Preveen Verma, Sandhya Verma, Mohan Chandra Kalita, Sarangthem Indira Devi
We report here the 3.6-Mb draft genome of Bacillus altitudinis Lc5, a potential plant growth promoter and an active antagonistic endophyte of black rice. This genome study will provide better insights into the strain's mechanisms for plant growth promotion and biocontrol, thus facilitating its application in organic agriculture.
June 28, 2018: Genome Announcements
#30
JOURNAL ARTICLE
Hidehiro Sugiura, Shinya Monno, Hazuki Yamashita, Yusuke Kato, Masayuki Imajoh
Edwardsiella piscicida strains JF1307 and JF1411 were isolated from cultured olive flounder that were diagnosed as being infected with edwardsiellosis. The draft genome sequences of the two isolates comprise 3,882,000 bp and 3,827,424 bp with G+C contents of 59.5% and 59.6%, respectively.
June 28, 2018: Genome Announcements
#31
JOURNAL ARTICLE
Valerie Osieka, Mirjam Grobbel, Silvia Schmoger, Claudia A Szentiks, Alexandra Irrgang, Annemarie Käsbohrer, Bernd-Alois Tenhagen, Jens A Hammerl
Here, we announce the genome of an extended-spectrum β-lactamase-producing Citrobacter freundii strain isolated from the cecum of a house sparrow that was found dead in Berlin-Lichtenberg, Germany, in 2017. This isolate exhibits increased MICs for several antimicrobials and a comprehensive set of acquired resistance determinants potentially involved in horizontal gene transfer.
June 28, 2018: Genome Announcements
#32
JOURNAL ARTICLE
Sead Hadziabdic, Maria Borowiak, Angelina Bloch, Burkhard Malorny, Istvan Szabo, Beatriz Guerra, Annemarie Kaesbohrer, Jennie Fischer
Carbapenems are an important class of β-lactams and one of the last options for treating severe human infections. We present here the complete genome sequence of avian native carbapenemase-producing Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738, harboring a bla NDM-1 -carrying IncA/C2 plasmid, isolated in 2012 from a wild bird ( Milvus migrans ) in Germany.
June 28, 2018: Genome Announcements
#33
JOURNAL ARTICLE
Zhong Liang, Melissa Stephens, Victoria A Ploplis, Shaun W Lee, Francis J Castellino
Whole-genome shotgun sequences and bottom-up assembly of contigs of six skin isolates of Streptococcus pyogenes , viz , NS88.3 ( emm 98.1), NS223 ( emm 91), NS455 ( emm 52), SS1448 ( emm 86.2), SS1572 ( emm 223), and SS1574 ( emm 224), are presented here. All contigs were annotated, and the gene arrangements and the inferred proteins were consistent with a pattern D classification.
June 28, 2018: Genome Announcements
#34
JOURNAL ARTICLE
Ana Rita Costa, Stan J J Brouns, Franklin L Nobrega
Bacteriophages and their proteins have potential applications in biotechnology for the detection and control of bacterial diseases. Here, we describe the sequencing and genome annotations of two strictly virulent Escherichia coli bacteriophages that may be explored for biocontrol strategies and to expand the understanding of phage-host interactions.
June 28, 2018: Genome Announcements
#35
JOURNAL ARTICLE
Lauren E Cook, Spencer S Gang, Alicia Ihlan, Matthew Maune, Ralph S Tanner, Michael J McInerney, George Weinstock, Elizabeth A Lobos, Robert P Gunsalus
Acetomicrobium hydrogeniformans , an obligate anaerobe of the phylum Synergistetes , was isolated from oil production water. It has the unusual ability to produce almost 4 molecules H2 /molecule glucose. The draft genome of A. hydrogeniformans OS1 (DSM 22491T ) is 2,123,925 bp, with 2,068 coding sequences and 60 RNA genes.
June 28, 2018: Genome Announcements
#36
JOURNAL ARTICLE
Lowia Al-Hussinee, Kuttichantran Subramaniam, Mohammad Shamim Ahasan, Bill Keleher, Thomas B Waltzek
Since its discovery in 2014, tilapia lake virus (TiLV) has emerged as a significant cause of mortality in tilapia cultured in Asia, Africa, and South America. Here, we report the complete genome sequence of a TiLV isolate obtained during a diagnostic investigation of an ongoing mortality event involving Nile tilapia cultured in Thailand.
June 28, 2018: Genome Announcements
#37
JOURNAL ARTICLE
J A Adeniji, T O C Faleye, O M Adewumi, O A Olayinka, E Donbraye, B Oluremi, U E George, O A Arowolo, E C Omoruyi, M I Ifeorah, A Akande
We present the draft genome of Mycoplasma arginini strain NGR_2017. This strain was recovered in Nigeria from cell culture in 2017. The assembly contains 620,555 bp in 12 contigs. It contains 561 coding sequences, 34 RNAs (29 tRNAs, 4 rRNAs, and 1 transfer-messenger RNA [tmRNA]), and a >26-kb integrative and conjugative element.
June 28, 2018: Genome Announcements
#38
JOURNAL ARTICLE
Yerbol Burashev, Vitaliy Strochkov, Kulyaisan Sultankulova, Mukhit Orynbayev, Abylay Sansyzbay, Nurlan Sandybayev, Sergazy Nurabayev, Irina Savitskaya, Daniel L Rock, Edan R Tulman
Here, we report the complete genome sequencing of strains A/equine/Kostanay/9/2012(H3N8) and A/equine/LKZ/9/2012(H3N8) of the equine influenza virus belonging to Florida sublineage, clade 2. The strains were isolated in 2012 in the northern and southern regions of Kazakhstan, respectively.
June 28, 2018: Genome Announcements
#39
JOURNAL ARTICLE
Daniel Barros Ortega, Rosiane Andrade Costa, Allan Silva Pires, Thiago Fellipe Araújo, Janaina Fernandez Araújo, Adriane Silva Kurokawa, Beatriz Simas Magalhães, Alessandra Maria Moreira Reis, Octávio Luís Franco, Ricardo Henrique Kruger, Georgios Joannis Pappas, Cristine Chaves Barreto
A Paenibacillus elgii strain isolated from soil samples from Cerrado, Brazil, showed antimicrobial activity. Its genome sequence was acquired (GS20 FLX Titanium 454 platform) and comprises 108 contigs ( N 50 , 198,427 bp) and 6,810 predicted sequences. Here, we shed some light on the antimicrobial genes of the strain, including a nonribosomal peptide synthetase (NRPS) module identified as part of a pelgipeptin gene cluster.
June 28, 2018: Genome Announcements
#40
JOURNAL ARTICLE
Sabrina Koberg, Erik Brinks, Viktoria Albrecht, Horst Neve, Charles M A P Franz
The complete genome sequence of the novel virulent Siphoviridae phage PMBT28, which may potentially be utilized for the biocontrol of Salmonella spp., is reported here. The phage was isolated using Salmonella enterica subsp. enterica serovar Senftenberg ATCC 43845 as a bacterial host. The genome had no significant sequence similarity to known phage genomes.
June 28, 2018: Genome Announcements
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