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JOURNAL ARTICLE
Irvan Luhung, Ana Carolina M Junqueira, Akira Uchida, Rikky W Purbojati, James N I Houghton, Caroline Chénard, Anthony Wong, Megan E Clare, Kavita K Kushwaha, Deepa Panicker, Alexander Putra, Nicolas E Gaultier, Balakrishnan N V Premkrishnan, Cassie E Heinle, Vineeth Kodengil Vettath, Daniela I Drautz-Moses, Stephan C Schuster
Pantoea ananatis SGAir0210 was isolated from outdoor air collected in Singapore. The genome was assembled from long reads generated by single-molecule real-time sequencing complemented with short reads. The genome size was approximately 4.81 Mb, with 4,303 protein-coding genes, 80 tRNAs, and 22 rRNAs identified.
July 5, 2018: Genome Announcements
#2
JOURNAL ARTICLE
Genome Sequence of Bacillus velezensis SGAir0473, Isolated from Tropical Air Collected in Singapore.
Serene B Y Lim, Ana Carolina M Junqueira, Akira Uchida, Rikky W Purbojati, James N I Houghton, Caroline Chénard, Anthony Wong, Sandra Kolundžija, Megan E Clare, Kavita K Kushwaha, Deepa Panicker, Alexander Putra, Nicolas E Gaultier, Balakrishnan N V Premkrishnan, Cassie E Heinle, Vineeth Kodengil Vettath, Daniela I Drautz-Moses, Stephan C Schuster
Bacillus velezensis strain SGAir0473 ( Firmicutes ) was isolated from tropical air collected in Singapore. Its genome was assembled using short reads and single-molecule real-time sequencing and comprises one chromosome with 4.18 Mb. The genome consists of 3,937 protein-coding genes, 86 tRNAs, and 27 rRNAs.
July 5, 2018: Genome Announcements
#3
JOURNAL ARTICLE
Nicolas E Gaultier, Ana Carolina M Junqueira, Akira Uchida, Rikky W Purbojati, James N I Houghton, Caroline Chénard, Anthony Wong, Megan E Clare, Kavita K Kushwaha, Deepa Panicker, Alexander Putra, Carmon Kee, Balakrishnan N V Premkrishnan, Cassie E Heinle, Serene B Y Lim, Vineeth Kodengil Vettath, Daniela I Drautz-Moses, Stephan C Schuster
Serratia marcescens strain SGAir0764 was isolated from a tropical air sample collected in Singapore. The complete genome, sequenced on the PacBio RS II platform, consists of one chromosome with 5.1 Mb and one plasmid with 76.4 kb. Genome annotation predicts 4,723 protein-coding genes, 89 tRNAs, and 22 rRNAs.
July 5, 2018: Genome Announcements
#4
JOURNAL ARTICLE
Nicolas E Gaultier, Ana Carolina M Junqueira, Akira Uchida, Rikky W Purbojati, James N I Houghton, Caroline Chénard, Anthony Wong, Sandra Kolundžija, Megan E Clare, Kavita K Kushwaha, Deepa Panicker, Alexander Putra, Carmon Kee, Balakrishnan N V Premkrishnan, Cassie E Heinle, Serene B Y Lim, Vineeth Kodengil Vettath, Daniela I Drautz-Moses, Stephan C Schuster
The thermophilic bacterium Geobacillus thermoleovorans was isolated from a tropical air sample collected in Singapore. The genome was sequenced on the PacBio RS II platform and consists of one chromosome with 3.6 Mb and one plasmid with 75 kb. The genome comprises 3,509 protein-coding genes, 88 tRNAs, and 27 rRNAs.
July 5, 2018: Genome Announcements
#5
JOURNAL ARTICLE
Yui Asahina, Akino Shiroma, Kazuma Nakano, Hinako Tamotsu, Noriko Ashimine, Misuzu Shinzato, Maiko Minami, Makiko Shimoji, Tetsuhiro Nakanishi, Shun Ohki, Kuniko Teruya, Kazuhito Satou, Miho Kobayashi, Tatsuro Hagi, Naoko Moriya, Chise Suzuki, Atsushi Tajima, Masaru Nomura, Takashi Hirano
Lactobacillus paracasei EG9 is a strain isolated from well-ripened cheese and accelerates free amino acid production during cheese ripening. Its complete genome sequence was determined using the PacBio RS II platform, revealing a single circular chromosome of 2,927,257 bp, a G+C content of 46.59%, and three plasmids.
July 5, 2018: Genome Announcements
#6
JOURNAL ARTICLE
Sohan Sengupta, Arnab Pramanik, Pijush Basak, Maitree Bhattacharyya
Streptomyces sp. SMS_SU21 possesses strong antimicrobial activity and antioxidant potential. This strain was isolated from the Sundarbans mangrove ecosystem, and its draft genome comprises 7,449,420 bp with 6,680 open reading frames. Genome analysis of strain SMS_SU21 provides insight into its secondary metabolite arsenal and reveals the gene clusters putatively responsible for its bioactive potential.
July 5, 2018: Genome Announcements
#7
JOURNAL ARTICLE
Zhaoping Zeng, Jiandong Shi, Xiaofang Guo, Ling Mo, Ningzhu Hu, Hongning Zhou, Yunzhang Hu
It has been determined that recent dengue virus epidemics in Yunnan, China, originated from Southeast Asian strains. Here, we report the first complete genome sequence and molecular characterization of the imported dengue virus serotype 1 strain YNPE1. Phylogenetic analysis revealed that strain YNPE1 belonged to genotype I.
July 5, 2018: Genome Announcements
#8
JOURNAL ARTICLE
S V Andryuschenko, I A Zdvizhkova, N B Perunova, O V Bukharin
This report describes the draft genome sequence of Klebsiella pneumoniae strain ICIS-278_PBV, isolated from the feces of a healthy 59-year-old man from Orenburg, Russia. The size of the genome was 5,584,615 bp (57.2% G+C content). Annotation revealed 5,302 coding sequences, including 5,254 proteins, 23 rRNA genes, and 81 tRNA genes.
July 5, 2018: Genome Announcements
#9
JOURNAL ARTICLE
Evgeniya Volkova, Andriyan Grinev, Rafaelle Fares-Gusmao, Caren Chancey, Maria Rios
We report here the complete genome sequences of two Zika virus strains (FSS13025 and PRVABC59) used for formulation of CBER/FDA RNA reference reagents and lot release panels for use with nucleic acid technology (NAT) testing.
July 5, 2018: Genome Announcements
#10
JOURNAL ARTICLE
Hue Thi Kim Vu, Matthew J Stasiewicz, Soottawat Benjakul, Kitiya Vongkamjan
We report here the complete genome sequences of three Listeria phages (PSU-VKH-LP019, PSU-VKH-LP040, and PSU-VKH-LP041), which were newly induced from lysogenic isolates of Listeria monocytogenes from seafood and a seafood processing environment in Thailand. The three phages show circularly permuted double-stranded DNA genomes with sizes of 38.6, 39.6, and 48.3 kb.
July 5, 2018: Genome Announcements
#11
JOURNAL ARTICLE
Chenyu Zhang, Hu Shan, Jianxin Wen
Porcine reproductive and respiratory syndrome virus (PRRSV), which leads to tremendous economic losses worldwide, is currently one of the most threatening viruses for the swine industry. However, PRRSV outbreaks in West China are rarely reported, even though the virus has remained active for a long time across the country. In this study, we report an outbreak of the highly pathogenic PRRSV strain QTX, isolated from a pig farm located in Ningxia, a province in West China.
July 5, 2018: Genome Announcements
#12
JOURNAL ARTICLE
Ana Isabela Lopes Sales, Guilherme Paier Milanez, Leandro C Nascimento, Camila Pinheiro do Carmo, Fernanda Luz Paulino da Costa, Gonçalo Amarante Guimarães Pereira, Roberto Martinez, Marcelo Brocchi
Draft genomes of three Salmonella enterica 4,[5],12:i:- (STi) strains isolated from human infections were obtained using Illumina sequencing. They were negative for the fljBA operon but positive for hin , and k-mer analyses revealed their identity as S. enterica 4,[5],12:i:- 08-1736 and S Typhimurium. A draft S Typhimurium sequence is described for comparison.
July 5, 2018: Genome Announcements
#13
JOURNAL ARTICLE
Mikhail M Shneider, Anastasia P Kabanova, Aleksei A Korzhenkov, Kirill K Miroshnikov, Ngoc Ha Vo Thi, Stepan V Toshchakov, Konstantin A Miroshnikov, Alexander N Ignatov
We present the draft genome sequence of Pectobacterium atrosepticum strain PB72 infecting potatoes in Russia. PB72 is similar to the previously reported strain 21A. Considering potential biocontrol of this pathogen, an infectious bacteriophage was isolated and characterized. Phage vB_PatP_PP90 is a lytic podovirus of narrow host range belonging to the KP34virus genus.
July 5, 2018: Genome Announcements
#14
JOURNAL ARTICLE
Yen-Te Liao, Fang Liu, Xincheng Sun, Robert W Li, Vivian C H Wu
We report here the whole-genome sequence of a novel Escherichia coli phage, vB_EcoS Sa179lw, isolated from surface water collected in a produce-growing area. With the presence of a putative eae -like gene that was associated with previous non-O157 Shiga toxin-producing E. coli outbreaks, this phage is a candidate for the study of virulence gene transfer.
July 5, 2018: Genome Announcements
#15
JOURNAL ARTICLE
Mobolaji F Adegboye, Briallen Lobb, Olubukola O Babalola, Andrew C Doxey, Kesen Ma
We report here the draft genome sequences of two novel strains of Streptomyces (NWU339 and NWU49) isolated from South African rhizosphere soils. Both strains were found to possess strong cellulolytic activity and contain numerous putative cellulase genes. Both genomes possess benzoate degradation pathways, while NWU49 contains the genomic potential for enediyne biosynthesis.
June 28, 2018: Genome Announcements
#16
JOURNAL ARTICLE
Julie Haendiges, Tyann Blessington, Jie Zheng, Gordon Davidson, Jesse D Miller, Maria Hoffmann
A multistate outbreak of 11 Salmonella infections linked to pistachio nuts occurred in 2016. In this announcement, we report the complete genome sequences of four Salmonella enterica subsp. enterica serovar Senftenberg and S. enterica subsp. enterica serovar Montevideo isolates from pistachios collected during the 2016 outbreak investigation.
June 28, 2018: Genome Announcements
#17
JOURNAL ARTICLE
Jin-Ju Jeong, Ye Ji Lee, Duleepa Pathiraja, Byeonghyeok Park, In-Geol Choi, Ki Deok Kim
The genus Chryseobacterium , belonging to the family Flavobacteriaceae , contains Gram-negative, yellow-pigmented, rod-shaped, and non-spore-forming bacterial species, which may be free living or parasitic. Here, we report draft genome sequences of type strains of three species of Chryseobacterium containing genes related to biological control and plant growth promotion.
June 28, 2018: Genome Announcements
#18
JOURNAL ARTICLE
Kurt C Showmaker, Kimberly K O Walden, Christopher J Fields, Kris N Lambert, Matthew E Hudson
In this study, we present the genome sequence of the " Candidatus Cardinium hertigii" strain cHgTN10, an endosymbiotic bacterium of the plant-parasitic nematode Heterodera glycines This is the first genome assembly reported for an endosymbiont directly sequenced from a tylenchid nematode.
June 28, 2018: Genome Announcements
#19
JOURNAL ARTICLE
Helen Morcrette, Marina S Morgan, Audrey Farbos, Paul O'Neill, Karen Moore, Richard W Titball, David J Studholme
Here, we present the genome sequence of Staphylococcus aureus Ex1, isolated in 2015 from a patient with spinal osteomyelitis at the Royal Devon and Exeter Hospital in the United Kingdom. The availability of the Ex1 genome sequence provides a resource for studying the basis for spinal infection and horizontal gene transfer in S. aureus .
June 28, 2018: Genome Announcements
#20
JOURNAL ARTICLE
Fifty-Six Draft Genome Sequences of 10 Lactobacillus Species from 22 Commercial Dietary Supplements.
Jayanthi Gangiredla, Tammy J Barnaba, Mark K Mammel, David W Lacher, Christopher A Elkins, Keith A Lampel, Chris A Whitehouse, Carmen Tartera
Here, we present the genome sequences of 56 isolates of 10 species of the genus Lactobacillus that are considered beneficial components of the gut microbiota. The isolates examined were found in commercially available dietary supplements in the U.S. market.
June 28, 2018: Genome Announcements
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