journal
https://read.qxmd.com/read/38656728/integrative-analyses-of-bulk-and-single-cell-rna-seq-identified-the-shared-genes-in-acute-respiratory-distress-syndrome-and-rheumatoid-arthritis
#1
JOURNAL ARTICLE
Jun Shi, Jiajia Tang, Lu Liu, Chunyang Zhang, Wei Chen, Man Qi, Zhihai Han, Xuxin Chen
Acute respiratory distress syndrome (ARDS), a progressive status of acute lung injury (ALI), is primarily caused by an immune-mediated inflammatory disorder, which can be an acute pulmonary complication of rheumatoid arthritis (RA). As a chronic inflammatory disease regulated by the immune system, RA is closely associated with the occurrence and progression of respiratory diseases. However, it remains elusive whether there are shared genes between the molecular mechanisms underlying RA and ARDS. The objective of this study is to identify potential shared genes for further clinical drug discovery through integrated analysis of bulk RNA sequencing datasets obtained from the Gene Expression Omnibus database, employing differentially expressed genes (DEGs) analysis and weighted gene co-expression network analysis (WGCNA)...
April 24, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38652428/mycosporine-like-amino-acids-as-a-potential-inhibitor-of-tyrosinase-related-protein-1-computational-screening-pharmacokinetics-and-molecular-dynamics-simulation
#2
JOURNAL ARTICLE
Nasreen Amin, Vinay K Singh, Vinod K Kannaujiya
Melanin is the major pigment responsible for the coloring of mammalian skin, hair, and eyes to defend against ultraviolet radiation. However, excessive melanin production has resulted in numerous types of hyperpigmentation disorders. Tyrosinase-related protein 1 (TYRP1) is a transmembrane glycoprotein enzyme found in many organisms, including humans, that plays an important role in melanogenesis. Thus, controlling the enzyme activity of TYRP1 with tyrosinase inhibitors is a vital step in the treatment of hyperpigmentation problems in humans...
April 23, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38649638/detection-of-crispr-cas9-mediated-fetal-hemoglobin-reactivation-in-erythroblasts-derived-from-cord-blood-hematopoietic-stem-cells
#3
JOURNAL ARTICLE
Nahal Maroofi, Masoumeh Sadat Mousavi Maleki, Mahsa Tahmasebi, Hamid Reza Khorram Khorshid, Younes Modaberi, Reza Najafipour, Mehdi Banan
Reactivation of the fetal hemoglobin (HbF) in adult erythroid cells via genome editing is a strategy for the treatment of β-thalassemia and sickle cell disease. In related reports, the reactivation of HbF is regularly examined in erythroblasts which are generated from the adult CD34+ hematopoietic stem and progenitor cells (HSPCs). However, the procurement of adult HSPCs, either from the bone-marrow (BM) or from mobilized peripheral-blood (mPB), is difficult. Cord-blood (CB) is a readily available source of HSPCs...
April 22, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38637450/ythdc1-mediated-lncrna-msc-as1-m6a-modification-potentiates-laryngeal-squamous-cell-carcinoma-development-via-repressing-atxn7-transcription
#4
JOURNAL ARTICLE
Shu Zhang, Qun Wu, Wei Cheng, Weijiang Dong, Bo Kou
Laryngeal squamous cell carcinoma (LSCC) has the highest mortality rate among head and neck squamous cell carcinoma. This study was designed to investigate the biological effect of long noncoding RNA (lncRNA) MSC antisense RNA 1 (MSC-AS1) on LSCC development and the underlying mechanism. The expression and prognostic value of lncRNAs in head and neck squamous cell carcinoma were predicted in the bioinformatics tools. The overexpression of MSC-AS1 in LSCC patients predicted a poor prognosis. Depletion of MSC-AS1 using shRNA repressed the malignant phenotype of AMC-HN-8 and TU-177 cells...
April 18, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38637449/correlation-between-serum-1-25-oh-2d3-serum-phosphorus-and-parathyroid-hormone-and-parathyroid-function-after-central-lymph-node-dissection-in-patients-with-papillary-thyroid-carcinoma
#5
JOURNAL ARTICLE
Hongmei Yu, Haiqiang Li, Weiwei Su, Zhiwei Xu, Mengqi Xu, Chen Hang, Xiuping Li
This work was to demonstrate the relationship between serum 1,25-dihydroxyvitamin D3 (1,25(OH)2D3), serum phosphorus (SP), and parathyroid hormone (PTH) and parathyroid function after central lymph node dissection (CLND) in patients with papillary thyroid carcinoma (PTC). 200 PTC patients after CLND were included, who were rolled into a control group (CG) (n = 89 cases without hypoparathyroidism) and an observation group (OG) (n = 111 cases with complicated hypoparathyroidism). The 1,25(OH)2D3, SP, and PTH levels were detected, and the diagnostic effect of these indicators was assessed...
April 18, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38635107/mechanisms-of-ferroptosis-related-genes-in-gallbladder-cancer-based-on-bioinformatics-analysis
#6
JOURNAL ARTICLE
Miao Li, Hang Shi, Jing Dong, Ning Lu, Jinjie Lou, Yangbo Xu
Gallbladder Cancer (GBC) is a lethal malignancy with limited treatment options and poor prognosis. Recent studies have emphasized the role of ferroptosis, a regulated form of cell death, in various cancers, including GBC. We applied bioinformatics methodologies on four GBC datasets to identify differentially expressed genes (DEGs). An intersection of DEGs from the four datasets with ferroptosis and GBC-associated genes was done to identify key ferroptosis-related genes in GBC. GSVA pathway enrichment analysis and immune cell infiltration assessment were conducted to explore their functional roles and interactions...
April 18, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38627328/studies-on-treatment-within-the-scope-of-medical-biotechnology-for-pancreatic-diseases
#7
REVIEW
Dilara Aylar, Ayse Karatug Kacar
The pancreas is made of two compartments: the exocrine pancreas, a source of digestive enzymes, and the endocrine islets which produce vital hormones. Distinct diseases could arise in the pancreas such as diabetes, neuroendocrine tumors, pancreatitis, and pancreatic cancers. Various treatment methods are being researched against these diseases. Treatment with recombinant proteins, therapeutic antibodies, vaccination, gene therapy, tissue engineering, and stem cell treatment are treatment methods. Furthermore, biomarkers are important for both treatment and diagnosis...
April 16, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38625508/advances-in-therapeutic-cancer-vaccines-their-obstacles-and-prospects-toward-tumor-immunotherapy
#8
REVIEW
Azadeh Eskandari, Thean Chor Leow, Mohd Basyaruddin Abdul Rahman, Siti Nurbaya Oslan
Over the past few decades, cancer immunotherapy has experienced a significant revolution due to the advancements in immune checkpoint inhibitors (ICIs) and adoptive cell therapies (ACTs), along with their regulatory approvals. In recent times, there has been hope in the effectiveness of cancer vaccines for therapy as they have been able to stimulate de novo T-cell reactions against tumor antigens. These tumor antigens include both tumor-associated antigen (TAA) and tumor-specific antigen (TSA). Nevertheless, the constant quest to fully achieve these abilities persists...
April 16, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38619801/wtap-mediated-n6-methyladenine-modification-of-circeef2-promotes-lung-adenocarcinoma-tumorigenesis-by-stabilizing-cant1-in-an-igf2bp2-dependent-manner
#9
JOURNAL ARTICLE
Hao Zheng, Zhuo Cao, Yuankai Lv, Xiaoping Cai
N6-methyladenosine (m6A) is a common posttranscriptional RNA modification and plays an important role in cancer biology. Circular RNAs (circRNAs) are also reported to participate in lung adenocarcinoma (LUAD) progression. Here, we aimed to investigate the functions of Wilms tumor 1-associating protein (WTAP) methyltransferase and circEEF2 in LUAD cell tumorigenesis, and probe whether circEEF2 functioned through WTAP-induced m6A modification and its potential mechanisms. Functional analyses were conducted by tube formation, sphere formation, 5-ethynyl-2'-deoxyuridine (EdU), flow cytometry, and transwell assays in vitro as well as tumor formation experiments in mice, respectively...
April 15, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38619800/prediction-of-prospective-mutational-landscape-of-sars-cov-2-spike-ssrna-and-evolutionary-basis-of-its-host-interaction
#10
JOURNAL ARTICLE
Aniket Sarkar, Trijit Arka Ghosh, Bidyut Bandyopadhyay, Smarajit Maiti, Anindya Sundar Panja
Booster doses are crucial against severe COVID-19, as rapid virus mutations and variant emergence prolong the pandemic crisis. The virus's quick evolution, short generation-time, and adaptive changes impact virulence and evolvability, helping predictions about variant of concerns' (VOCs') landscapes. Here, in this study, we used a new computational algorithm, to predict the mutational pattern in SARS-CoV-2 ssRNA, proteomics, structural identification, mutation stability, and functional correlation, as well as immune escape mechanisms...
April 15, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38619799/exploring-the-role-of-ferroptosis-related-circular-rnas-in-subarachnoid-hemorrhage
#11
REVIEW
Yanju Song, Xin Luo, Liping Yao, Yinchao Chen, Xinfa Mao
Subarachnoid hemorrhage (SAH) is a devastating cerebrovascular event associated with high mortality and significant morbidity. Recent studies have highlighted the emerging role of ferroptosis, a novel form of regulated cell death, in the pathogenesis of SAH. Circular RNAs (circRNAs), have been found to play essential roles in various cellular processes, including gene regulation and disease pathogenesis. The expression profile of circRNAs in neural tissues, particularly in the brain, suggests their critical role in synaptic function and neurogenesis...
April 15, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38613722/deciphering-ferroptosis-from-molecular-pathways-to-machine-learning-guided-therapeutic-innovation
#12
REVIEW
Megha Mete, Amiya Ojha, Priyanka Dhar, Deeplina Das
Ferroptosis is a unique form of cell death reliant on iron and lipid peroxidation. It disrupts redox balance, causing cell death by damaging the plasma membrane, with inducers acting through enzymatic pathways or transport systems. In cancer treatment, suppressing ferroptosis or circumventing it holds significant promise. Beyond cancer, ferroptosis affects aging, organs, metabolism, and nervous system. Understanding ferroptosis mechanisms holds promise for uncovering novel therapeutic strategies across a spectrum of diseases...
April 13, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38598092/recombinant-amidases-recent-insights-and-its-applications-in-the-production-of-industrially-important-fine-chemicals
#13
REVIEW
Ananta Ganjoo, Vikash Babu
The current research for the synthesis of industrially important fine chemicals is more inclined towards developing enzyme-based processes. The biotransformation reactions wherein microbial cells/enzymes are used, have become essential in making the process efficient, green, and economical. Amongst industrially important enzymes, amidase is one of the most versatile tools in biocatalysis and biotransformation reactions. It shows broad substrate specificity and sturdy functional characteristics because of its promiscuous nature...
April 10, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38580851/the-predictive-value-of-neutrophil-extracellular-trap-related-risk-score-in-prognosis-and-immune-microenvironment-of-colorectal-cancer-patients
#14
JOURNAL ARTICLE
Jiuxing Dong, Jia Zhao, Zhenming Wu, Jun Liu, Baoxin Wang, Xiuheng Qi
Colorectal cancer (CRC) has brought great healthy burden for patients. Neutrophil extracellular traps (NETs) have been explored in several tumors, while it remains largely unclear in CRC. CRC-related data were downloaded from Cancer Genome Atlas and Gene Expression Omnibus databases. Then, a NET risk score was built after univariate Cox and LASSO Cox regression analysis. Prognostic value was evaluated via survival analysis, stratification analysis, and ROC analysis. The functional enrichment analysis was conducted basing on bulk and scRNA-seq data...
April 5, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38575817/prognostic-model-construction-of-disulfidptosis-related-genes-and-targeted-anticancer-drug-research-in-pancreatic-cancer
#15
JOURNAL ARTICLE
Hongtao Duan, Li Gao, Aiminuer Asikaer, Lingzhi Liu, Kuilong Huang, Yan Shen
Pancreatic cancer stands as one of the most lethal malignancies, characterized by delayed diagnosis, high mortality rates, limited treatment efficacy, and poor prognosis. Disulfidptosis, a recently unveiled modality of cell demise induced by disulfide stress, has emerged as a critical player intricately associated with the onset and progression of various cancer types. It has emerged as a promising candidate biomarker for cancer diagnosis, prognosis assessment, and treatment strategies. In this study, we have effectively established a prognostic risk model for pancreatic cancer by incorporating multiple differentially expressed long non-coding RNAs (DElncRNAs) closely linked to disulfide-driven cell death...
April 4, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38573545/the-evolving-landscape-of-cervical-cancer-breakthroughs-in-screening-and-therapy-through-integrating-biotechnology-and-artificial-intelligence
#16
REVIEW
Raghu Aswathy, Sundaravadivelu Sumathi
Cervical cancer (CC) continues to be a major worldwide health concern, profoundly impacting the lives of countless females worldwide. In low- and middle-income countries (LMICs), where CC prevalence is high, innovative, and cost-effective approaches for prevention, diagnosis, and treatment are vital. These approaches must ensure high response rates with minimal side effects to improve outcomes. The study aims to compile the latest developments in the field of CC, providing insights into the promising future of CC management along with the research gaps and challenges...
April 4, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38573544/ehmt2-suppresses-arrb1-transcription-and-activates-the-hedgehog-signaling-to-promote-malignant-phenotype-and-stem-cell-property-in-oral-squamous-cell-carcinoma
#17
JOURNAL ARTICLE
Ling Niu, Guangyao Hu
Oral squamous cell carcinoma (OSCC) represents the primary subtype of head and neck squamous cell carcinoma (HNSCC), characterized by a high morbidity and mortality rate. Although previous studies have established specific correlations between euchromatic histone lysine methyltransferase 2 (EHMT2), a histone lysine methyltransferase, and the malignant phenotype of OSCC cells, its biological functions in OSCC remain largely unknown. This study, grounded in bioinformatics predictions, aims to clarify the influence of EHMT2 on the malignant behavior of OSCC cells and delve into the underlying mechanisms...
April 4, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38565775/from-data-to-cure-a-comprehensive-exploration-of-multi-omics-data-analysis-for-targeted-therapies
#18
REVIEW
Arnab Mukherjee, Suzanna Abraham, Akshita Singh, S Balaji, K S Mukunthan
In the dynamic landscape of targeted therapeutics, drug discovery has pivoted towards understanding underlying disease mechanisms, placing a strong emphasis on molecular perturbations and target identification. This paradigm shift, crucial for drug discovery, is underpinned by big data, a transformative force in the current era. Omics data, characterized by its heterogeneity and enormity, has ushered biological and biomedical research into the big data domain. Acknowledging the significance of integrating diverse omics data strata, known as multi-omics studies, researchers delve into the intricate interrelationships among various omics layers...
April 2, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38565774/suppression-of-jak2-stat3-pathway-by-notoginsenoside-r1-reduces-epithelial-mesenchymal-transition-in-non-small-cell-lung-cancer
#19
JOURNAL ARTICLE
Min Wan, Hong Yu, Haoqing Zhai
It has bene reported that a novel saponin-notoginsenoside R1 (NGR1) possesses strong anti-tumor activities. This study aimed to investigate the role and mechanism of NGR1 in non-small cell lung cancer (NSCLC). NSCLC cell viability, proliferation, migration, and invasiveness were assessed using the ex vivo assays. NSCLC xenograft mouse models were constructed to confirm the role of NGR1 in vivo. Epithelial-mesenchymal transition (EMT)-related proteins and key markers in the JAK2/STAT3 pathway were examined using immunoblotting and immunohistochemistry analyses...
April 2, 2024: Molecular Biotechnology
https://read.qxmd.com/read/38555332/entrapment-of-papain-in-chitosan-polyethylene-glycol-hybrid-nanohydrogels-presenting-a-model-for-protein-delivery-systems
#20
JOURNAL ARTICLE
Nasim Jafari, Saeed Najavand, Mohammad Pazhang, Amir Abbas Matin
In this study, the process of manufacturing nanohydrogels containing papain and how to release it was investigated. Chitosan nanohydrogels and chitosan-polyethylene glycol hybrid nanohydrogels were used to entrapment of papain as a protein model. In order to evaluate and confirm different properties of nanohydrogels such as size, shape, the rate of swelling and flexibility, different methods was used. The maximum amount of papain entrapment was observed in 0.75% concentration of chitosan and 1% concentration of sodium Tripolyphosphate (TPP) as linker...
March 30, 2024: Molecular Biotechnology
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