journal
https://read.qxmd.com/read/38387652/bacteria-as-a-source-of-biopigments-and-their-potential-applications
#1
REVIEW
Moitrayee Devi, Elancheran Ramakrishnan, Suresh Deka, Deep Prakash Parasar
From the prehistoric period, the utilization of pigments as colouring agents was an integral part of human life. Early people may have utilized paint for aesthetic motives, according to archaeologists. The pigments are either naturally derived or synthesized in the laboratory. Different studies reported that certain synthetic colouring compounds were toxic and had adverse health and environmental effects. Therefore, knowing the drawbacks of these synthetic colouring agents now scientists are attracted towards the harmless natural pigments...
February 20, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38360298/enhancing-sensitivity-of-qpcr-assays-targeting-streptococcus-pneumoniae-neisseria-meningitidis-and-haemophilus-influenzae-by-using-a-mutant-taq-dna-polymerase
#2
JOURNAL ARTICLE
Selin Nar Otgun, Canan Zohre Ketre Kolukirik, Nuriye Unal Sahin, Mustafa Kolukirik, Gozde Girgin Ozgumus, Meral Turan, Mert Elmas, Selcuk Kilic
AIMS: Streptococcus pneumoniae, Neisseria meningitidis and Haemophilus influenzae are important causes of bacterial meningitis. In this study, the DNA binding site of the wild type Taq DNA polymerase was modified to produce a mutant enzyme with enhanced DNA affinity and PCR performance. The engineered and the wild type enzymes were integrated into qPCR-based assays for molecular detection of S. pneumoniae, N. meningitidis, H. influenzae, and serogroups and serotypes of these three pathogens...
February 13, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38360297/fluorine-materials-scavenge-excess-carbon-dioxide-and-promote-escherichia-coli-growth
#3
JOURNAL ARTICLE
Yoshihisa Yamashige, Shojiro Kikuchi, Ryosuke Hosoki, Koji Kawada, Katsuaki Izawa, Masahiko Harata, Yuichi Ogawa
Fluorinated solvents have been used as oxygen carriers in closed microbial cultures to sustain aerobic conditions. However, the growth-promoting effects of fluorinated solvents remain unclear. Therefore, this study aimed to elucidate the mechanism by which fluorinated solvents promote microbial growth and to explore alternative materials that can be easily isolated after culture. Escherichia coli and HFE-7200, a fluorinated solvent, were used to explore factors other than oxygen released by fluorinated solvents that promote microbial growth...
February 13, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38342249/rapid-and-sensitive-detection-of-salmonella-in-agro-food-and-environmental-samples-a-review-of-advances-in-rapid-tests-and-biosensors
#4
REVIEW
Siti Nur Hazwani Oslan, Nik Yusnoraini Yusof, Si Jie Lim, Nurul Hawa Ahmad
Salmonella is as an intracellular bacterium, causing many human fatalities when the host-specific serotypes reach the host gastrointestinal tract. Nontyphoidal Salmonella are responsible for numerous foodborne outbreaks and product recalls worldwide whereas typhoidal Salmonella are responsible for Typhoid fever cases in developing countries. Yet, Salmonella-related foodborne disease outbreaks through its food and water contaminations have urged the advancement of rapid and sensitive Salmonella-detecting methods for public health protection...
February 9, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38341180/determination-of-foodborne-pathogens-in-minced-beef-by-real-time-pcr-without-culture-enrichment
#5
JOURNAL ARTICLE
Busra Turanoglu, Mehmet Akif Omeroglu, Mustafa Ozkan Baltaci, Gulsah Adiguzel, Ahmet Adiguzel
Meat provides the necessary environment for the growth of foodborne pathogens due to its features such as being rich in protein and having sufficient water activity. Listeria monocytogenes, Salmonella enterica, and Escherichia coli O157:H7, which can be transmitted through many foods, including water, and cause serious diseases, are among the significant pathogens. In the current study. Detection of Listeria monocytogenes, Escherichia coli and Salmonella enterica in 100 minced beef samples collected from different butchers and markets situated in the central districts of Erzurum province was performed by Real-Time PCR without pre-enrichment and DNA isolation...
February 8, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38331102/optimized-bacterial-absolute-quantification-method-by-qpcr-using-an-exogenous-bacterial-culture-as-a-normalization-strategy-in-triple-species-bv-like-biofilms
#6
JOURNAL ARTICLE
Inês Lameira, Ana S Pinto, Ângela Lima, Christina A Muzny, Nuno Cerca
Quantitative Polymerase Chain Reaction (qPCR) is a widely used method in molecular biology to quantify target DNA sequences. Despite its accuracy, there are important experimental controls that should be considered to avoid biased results. One of them is gDNA loss during extraction, which is higher among samples with lower bacterial concentrations. Improvement in qPCR quantification procedures is mandatory to obtain reproducible and accurate results. Herein, we report an improved qPCR method for bacterial quantification of Gardnerella vaginalis, Prevotella bivia, and Fannyhessea vaginae, three key-bacterial vaginosis (BV)-associated bacteria (BVAB) thought to play important roles in the pathogenesis of this common vaginal infection...
February 6, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38325717/rapid-detection-of-clarithromycin-resistance-in-clinical-samples-of-nontuberculous-mycobacteria-by-nucleotide-maldi-tof-ms
#7
JOURNAL ARTICLE
Li Wang, Peng Wang, Jing-Hui Yang, Xiao-Cui Wu, Fang-You Yu, Jin Gu, Wei Sha
The multidrug resistance of nontuberculous mycobacteria (NTM) poses a significant therapeutic challenge. Rapid and reliable drug susceptibility testing is urgently needed for evidence-based treatment decision, especially for macrolides. This study evaluated the utility of nucleotide matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (NMTMS) in detecting clarithromycin resistance. Sixty-four clinical isolates were identified to species by NMTMS, and mutations associated with clarithromycin resistance were detected...
February 5, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38320738/in-vivo-assembly-of-genetic-constructs-in-filamentous-fungus-talaromyces-cellulolyticus
#8
JOURNAL ARTICLE
Alexandra P Orleneva, Petr N Teslya, Vsevolod A Serebrianyi
In the filamentous fungus Talaromyces cellulolyticus, similar to other filamentous fungi, non-homologous recombination predominates over homologous recombination. For instance, to achieve an acceptable integration frequency of a genetic construct into a target site on the intact chromosome, the flanking sequences directing this integration should be approximately 2.5 kb in length. However, despite the requirement of long flanks for integration into the intact chromosome, we found that homologous recombination between linear DNA fragments in T...
February 4, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38311183/short-communication-investigating-optimal-laboratory-growth-conditions-of-gracilibacillus-halotolerans-in-media-supplemented-with-salt
#9
JOURNAL ARTICLE
Isaac N Young, Victor Jimenez
Gracilibacillus halotolerans, a new and relatively unstudied extremophile, extracted from the Great Salt Lake USA, survives in an extreme saline environment. Uncovering optimal laboratory growth conditions can be useful to improve treatment strategies against antibiotic resistance and biofilm formation. In the current study, G. halotolerans growth optimization was tested to determine the ideal saline concentration. In addition, a variety of G. halotolerans'-derived survival strategies were reviewed. The major findings of the current study includes the optimal laboratory growth condition for G...
February 2, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38302060/electron-microscopic-observation-of-mycobacterium-avium-subsp-paratuberculosis-in-cattle-feces-after-a-novel-purification-using-liquid-paraffin
#10
JOURNAL ARTICLE
Masatoshi Fujihara, Daisuke Kondoh, Shigeru Matsuzawa, Ikunori Naito
We developed a novel method for purifying acid-fast bacteria from feces. The method enabled the observation of characteristic clumps of Mycobacterium avium subsp. paratuberculosis (MAP) under electron microscopy by removing contaminants and other bacteria. Further refinement of this method will contribute to efficient and effective MAP detection.
January 30, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38272400/investigation-of-the-potential-of-yeast-strains-for-phytase-biosynthesis-in-a-two-step-screening-procedure
#11
JOURNAL ARTICLE
Danail Georgiev, Milena Kostova, Ana Caroline de Oliveira, Yordan Muhovski
Research into phytase production is useful for improving the efficiency of animal production, reducing environmental impact, and contributing to the development of sustainable and efficient animal production systems. This study aims to investigate the potential of yeast strains for phytase biosynthesis in nutrient media. Phytase is a phosphomonoesterase (E.C 3.1.3.8) catalyzing in a ladder-like manner the dephosphorylation of phytic acid and its salts, with various resulting myo-inositol phosphates and phosphoric acid...
January 23, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38211840/recent-advances-in-immuno-based-methods-for-the-detection-of-ralstonia-solanacearum
#12
REVIEW
Shalini Bhatt, Neha Faridi, S Merwyn P Raj, Ankur Agarwal, Mayank Punetha
Ralstonia solanacearum (RS) is a widely recognized phytopathogenic bacterium which is responsible for causing devastating losses in a wide range of economically significant crops. Timely and accurate detection of this pathogen is pivotal to implementing effective disease management strategies and preventing crop losses. This review provides a comprehensive overview of recent advances in immuno-based detection methods for RS. The review begins by introducing RS, highlighting its destructive potential and the need for point-of-care detection techniques...
January 9, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38176658/integrating-rapid-pathogen-identification-and-antimicrobial-susceptibility-testing-through-multiplex-taqman-qpcr-assay
#13
JOURNAL ARTICLE
Libo Xie, Min Yang, Min Liu, Qianyuan Li, Chunhua Luo, Jun Luo
Timely bacterial identification (ID) and antimicrobial susceptibility testing (AST) are of significance for therapy of bacteria-infected patients. In the present study, we developed a multiplex TaqMan qPCR assay for rapid and accurate ID and AST of three common hospital acquired pneumonia species, namely Acinetobacter baumannii, Klebsiella pneumoniae and Staphylococcus aureus. In this assay, DNA extraction and bacterial co-incubation with antibiotics are accomplished based on a common PCR instrument. ID of three bacteria is based on specific conserved DNA sequence fragment (gltA for A...
January 2, 2024: Journal of Microbiological Methods
https://read.qxmd.com/read/38169204/application-of-cell-free-plasma-next-generation-sequencing-technology-in-the-diagnosis-and-management-of-pediatric-meningitis
#14
JOURNAL ARTICLE
Nicole Duster, Nanda Ramchandar, Jennifer Foley, Lauge Farnaes, Nicole G Coufal
This retrospective study evaluates the clinical utility of CFPNGS in the diagnosis and management of pediatric meningitis. CFPNGS identified a causative pathogen in 36% of 28 subjects, compared to 50% for diverse conventional testing (57% combined). CFPNGS may be considered as an adjunct to standard testing.
December 31, 2023: Journal of Microbiological Methods
https://read.qxmd.com/read/38159650/cyanotoxins-availability-and-detection-methods-in-wastewater-treatment-plants-a-review
#15
REVIEW
K G L Manjitha, B G N Sewwandi
Research interest in ecological significance, toxicity, and potential applications of cyanobacterial metabolites has grown as a result of the current extensive cyanobacterial blooms in water bodies. Under favourable conditions, specific cyanobacterial species release cyanotoxins, hepatotoxins, dermatoxins, neurotoxins, and cytotoxins, creating a heightened threat to aquatic ecosystems and human health. Wastewater treatment plants (WWTPs) offer one of the best culture media for cyanobacterial development and synthesis of cyanotoxins by providing optimum environmental conditions, including temperature, light intensity, lengthy water residence time, and nutrient-rich habitat...
December 28, 2023: Journal of Microbiological Methods
https://read.qxmd.com/read/38158081/development-of-loop-mediated-isothermal-amplification-for-detection-of-mycoplasma-ovipneumoniae-in-goats-capra-hircus
#16
JOURNAL ARTICLE
Miti Borang, Rathish Ramachandran Latha, Pradeep Mampilli, Deepa Padinjare Melepat, Vijayakumar Kaithathara
Mycoplasma ovipneumoniae is an important pathogen that causes respiratory disease in goats and sheep, leading to significant economic losses in the livestock industry. A quick and robust diagnostic test will aid in early diagnosis and treatment of the disease. Loop-mediated isothermal amplification (LAMP) offers several advantages over traditional PCR, including faster amplification, simpler operation, and lower equipment requirements, making it a promising tool for use in basic livestock units where resources and infrastructure may be limited...
December 28, 2023: Journal of Microbiological Methods
https://read.qxmd.com/read/38158082/a-rapid-spectroscopic-method-for-the-identification-of-the-filamentous-fungi-isolated-from-turkish-traditional-mold-ripened-cheeses
#17
JOURNAL ARTICLE
Hatice Ebrar Kirtil, Nur Cebi, Rusen Metin Yildirim, Banu Metin, Muhammet Arici
Fourier transform infrared spectroscopy (FTIR) is an alternative microbial identification technique due to its faster analysis times and lower cost compared to molecular methods. In this study, forty-three fungal strains isolated from different Turkish traditional mold-ripened cheeses representing nine different Penicillium species (P. roqueforti, P. corylophilum, P. before, P. crustosum, P. spinulosum, P. rubens, P. brevicompactum, P. paneum, and P. solitum) were analyzed by using FTIR HTS-XT (High Throughput Screening Extension) method in the 4000-400 cm-1 wavenumber range...
December 27, 2023: Journal of Microbiological Methods
https://read.qxmd.com/read/38135160/nanoparticle-based-platforms-for-targeted-drug-delivery-to-the-pulmonary-system-as-therapeutics-to-curb-cystic-fibrosis-a-review
#18
REVIEW
Sujoy Rano, Ahana Bhaduri, Mukesh Singh
Cystic fibrosis (CF) is a genetic disorder of the respiratory system caused by mutation of the Cystic Fibrosis Trans-Membrane Conductance Regulator (CFTR) gene that affects a huge number of people worldwide. It results in difficulty breathing due to a large accumulation of mucus in the respiratory tract, resulting in serious bacterial infections, and subsequent death. Traditional drug-based treatments face hindered penetration at the site of action due to the thick mucus layer. Nanotechnology offers possibilities for developing advanced and effective treatment platforms by focusing on drugs that can penetrate the dense mucus layer, fighting against the underlying bacterial infections, and targeting the genetic cause of the disease...
December 20, 2023: Journal of Microbiological Methods
https://read.qxmd.com/read/38128700/antimicrobial-potential-of-linear-low-density-polyethylene-food-packaging-with-ag-nanoparticles-in-different-carriers-silica-and-hydroxyapatite
#19
JOURNAL ARTICLE
Sabrina da Costa Brito, Vinicius Alex Cano Pereira, Ana Carolina Figueiredo Prado, Thais Juliana Tobias, Elaine Cristina Paris, Marcos David Ferreira
Silver nanoparticles incorporation into polymeric packaging aims to prevent microbiological contamination in food products, thus ensuring superior food safety and preservation. In this context, this study aimed to verify the antimicrobial efficacy of linear low-density polyethylene (LLDPE) films incorporated with silver nanoparticles (AgNPs) dispersed in silica (SiO2 ) and hydroxyapatite (HAP) carriers at different concentrations. AgNPs + carriers polymer films were characterized at 0.2, 0.4, and 0.6% concentrations using X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), field emission gun-scanning electron microscope (FEG-SEM), thermogravimetric analyzer (TGA), differential scanning calorimetry (DSC), and migration in acidic and non-acidic simulants...
December 19, 2023: Journal of Microbiological Methods
https://read.qxmd.com/read/38101580/comparative-analysis-of-diagnostic-assays-for-scrub-typhus-unveiling-enhanced-approaches-for-accurate-detection
#20
JOURNAL ARTICLE
Shruti S Barbuddhe, Yogesh T Thorat, Piyush Kulkarni, Shilpshri V Shinde, Sandeep P Chaudhari, Nitin V Kurkure, Radhakrishna Sahu, Deepak B Rawool
The study comparatively evaluated serological assays, namely, Weil Felix assay, and IgM ELISA with the gold-standard immunofluorescence test (IFAT) for the sensitive and specific serodiagnosis of scrub typhus infection in occupationally exposed groups of humans. A total of 78 serum samples collected from persons affected with various ailments and belonging to different risk groups were screened in the study. Out of the 78 serum samples tested, a total of 17, 26, and 47 samples turned out to be positive by IFAT, IgM ELISA, and Weil Felix test, respectively...
December 13, 2023: Journal of Microbiological Methods
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