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Biotechnology Letters

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https://read.qxmd.com/read/31093837/activation-of-alternative-metabolic-pathways-diverts-carbon-flux-away-from-isobutanol-formation-in-an-engineered-escherichia-coli-strain
#1
Shalini S Deb, Shamlan M S Reshamwala, Arvind M Lali
OBJECTIVE: Metabolic engineering efforts are guided by identifying gene targets for overexpression and/or deletion. Isobutanol, a biofuel candidate, is biosynthesized using the valine biosynthesis pathway and enzymes of the Ehrlich pathway. Most reported studies for isobutanol production in Escherichia coli employ multicopy plasmids, an approach that suffers from disadvantages such as plasmid instability, increased metabolic burden, and use of antibiotics to maintain selection pressure...
May 15, 2019: Biotechnology Letters
https://read.qxmd.com/read/31089841/pseudomonas-monteilii-pn1-a-great-potential-p-nitrophenol-degrader-with-plant-growth-promoting-traits-under-drought-and-saline-alkali-stresses
#2
Yuqin Zhang, Feng Yang, Hejun Ren, Jinliang Liu, Wenyang Mu, Yan Wang
OBJECTIVES: To evaluate Pseudomonas monteilii strain PN1 for the removal efficiency of P-nitrophenol (PNP) in soils and its growth promotion of maize (Zea mays L.) seedlings under drought and saline-alkali stress. RESULTS: PN1 can survive in soils contaminated with PNP dosage between 90 and 155 mg/kg and considerably improved the removal PNP efficiency in soils. Drought and saline-alkali stress reduced maize seedling growth (root length, shoot height and dry or fresh weight) and improved the antioxidant enzyme activities and malondialdehyde (MDA) and proline (PRO) contents...
May 14, 2019: Biotechnology Letters
https://read.qxmd.com/read/31079345/gc-ms-based-profiling-of-alkanes-in-the-filamentous-yeast-hyphozyma-roseoniger-moesziomyces-antarcticus
#3
Efficient N Ncube, Lucia Steenkamp, Ian A Dubery
OBJECTIVES: Hyphozyma roseoniger, a filamentous yeast, is used as a biocatalyst in the bio-transformation of terpenoids; however, the microorganism's endogenous ability to synthesise and metabolise hydrophobic terpenes and alkanes has not been characterised. RESULTS: When grown in potato dextrose broth the organism reached the stationary phase at 14 d. The non-polar fraction from cells, harvested every second day, were obtained with ethyl acetate extraction and analysed by gas chromatography with mass-spectrometric detection...
May 11, 2019: Biotechnology Letters
https://read.qxmd.com/read/31076992/mir-499-inhibited-hypoxia-reoxygenation-induced-cardiomyocytes-injury-by-targeting-sox6
#4
Yujie Shi, Yunfeng Han, Lili Niu, Junxia Li, Yundai Chen
OBJECTIVE: MiR-499 has been reported to be expressed only in cardiomyocytes, and its expression would increase after acute myocardial infarction (AMI). miR-499 plays a role in the process of cardiomyocytes injury induced by hypoxia/reoxygenation (H/R), however, it still remains unclear. RESULTS: Hypoxia inhibited miR-499-5p expression and H/R induced apoptosis. SOX6 was a target gene of miR-499-5p, and high expression of miR-499-5p inhibited the expression of SOX6...
May 10, 2019: Biotechnology Letters
https://read.qxmd.com/read/31076991/multiphosphorylation-and-cellular-localization-of-poly-rc-binding-protein-1-during-mitosis-in-hela-cell
#5
Xiang Ma, Huicai Li, Xue Cao, Zhu Liu, Dacheng He
OBJECTIVE: To monitor the phosphorylation modifications and cellular localization of poly(rC)-binding protein-1 (PCBP1) during the cell cycle progression of Hela cells. RESULT: Hela cells highly synchronized at five different phases from interphase to mitosis were obtained. Using mitotic phosphoprotein-specific monoclonal antibody MPM-2, the exclusive occurrences of multiphosphorylation statuses of PCBP1 in mitosis were confirmed by a series of spots with increasing acidic pI (isoelectric point) in two rounds of 2D western blotting on the same membrane, and a visible molecular mass shift that can be eliminated by the treatment with λ phosphatase in 1D western blotting...
May 10, 2019: Biotechnology Letters
https://read.qxmd.com/read/31073804/pharmacological-notch-pathway-inhibition-leads-to-cell-cycle-arrest-and-stimulates-ascl1-and-neurogenin2-genes-expression-in-dental-pulp-stem-cells-derived-neurospheres
#6
Ali Niapour, Hatef Ghasemi Hamidabadi, Nazila Niapour, Perham Mohammadi, Marzieh Sharifi Pasandi, Vadoud Malekzadeh
OBJECTIVE: Human dental pulp-derived stem cells (hDPSCs) are becoming an attractive source for cell-based neurorestorative therapies. As such, it is important to understand the molecular mechanisms that regulate the differentiation of hDPSCs toward the neuronal fate. Notch signaling plays key roles in neural stem/progenitor cells (NS/PCs) maintenance and prevention of their differentiation. The aim of this study was to address the effects of Notch signaling inhibition on neurosphere formation of hDPSCs and neuronal differentiation of hDPSCs-neurospheres...
May 9, 2019: Biotechnology Letters
https://read.qxmd.com/read/31069569/biocatalytic-synthesis-and-characterization-of-sn-1-3-and-sn-2-monoacylglycerols
#7
Xiuwen Wang, Yang Cheng, Qingzhe Jin, Wei Wei, Xingguo Wang
OBJECTIVES: To investigate the lipase-catalyzed synthesis of high purity sn-1/3 and sn-2 monoacylglycerols (1/3-MAG and 2-MAG) of different fatty acids (FAs). RESULTS: The 1/3-MAGs of three FAs (16:0, 17:0, 16:1) were synthesized using lipase-catalyzed esterification of glycerol with FAs. The 2-MAGs were obtained from the ethanolysis of synthetic triacylglycerols using sn-1,3 regiospecific lipase. The effects of lipase types, substrate ratio, temperature, reaction time and lipase load on the MAG conversion were studied...
May 8, 2019: Biotechnology Letters
https://read.qxmd.com/read/31069568/precursor-feeding-and-altered-growth-conditions-reveal-novel-blue-pigment-production-by-rubrivivax-benzoatilyticus-ja2
#8
Lakshmi Prasuna Mekala, Mujahid Mohammed, Sasikala Chintalapati, Venkata Ramana Chintalapati
OBJECTIVE: To explore the secondary metabolite biosynthetic potential of Rubrivivax benzoatilyticus JA2 using a new metabolite mining strategy. RESULTS: Combination of precursor-feeding and altered growth conditions were used to mine new biomolecules. Strain JA2 utilised L-phenylalanine as sole source of nitrogen and showed pigments production only under phenylalanine-amended aerobic cultures. Stable isotope based precursor feeding studies indicated the blue pigment consists of 4-phenyl rings derived from L-phenylalanine...
May 8, 2019: Biotechnology Letters
https://read.qxmd.com/read/31065856/the-impact-of-n-terminal-nonessential-domains-on-the-enzymological-properties-of-the-pullulanase-from-a-marine-bacillus-megaterium
#9
YuLiang Jiao, Yong Wu, HongXu Chen, ShuJun Wang, Li Chen, MingSheng Lv, YaoWei Fang, Shu Liu
OBJECTIVE: To determine the impact of the N-terminal nonessential domains on the enzymological properties of a pullulanase (BmP) from Bacillus megaterium strain P6. METHODS: The domains of BmP were identified by the conserved domain (CD) search online software. BmP was prepared by fermentation with the strain P6 and its N-terminal truncated form (BmNTP) was obtained by heterologous expression. Structure-property relations were analyzed by homology modeling. RESULTS: BmP showed a domain architecture consisting of CBM41a-CBM41b-X-CBM48-pulA...
May 7, 2019: Biotechnology Letters
https://read.qxmd.com/read/31065855/engineering-cho-cells-galactose-metabolism-to-reduce-lactate-synthesis
#10
N Jiménez, V S Martínez, Z P Gerdtzen
OBJECTIVE: Over-express galactokinase (Galk1) in tissue plasminogen activator (tPA) producing CHO cells as a potential strategy to improve cell growth and product synthesis. RESULTS: tPA producing CHO cells were transfected with the galactokinase (Galk1) gene. CHO-Galk1 cells showed a 39% increase of the specific growth rate in galactose. Moreover, clones were able to use this hexose as their main carbon source to sustain growth contrary to their parental cell line...
May 7, 2019: Biotechnology Letters
https://read.qxmd.com/read/31037463/fabg-from-a-core-to-circumstantial-catalyst
#11
REVIEW
Anirudh P Shanbhag
Core biochemical pathways such as Fatty-acid synthesis II (FAS II) is ascribed to the synthesis of fatty-acids, biotin and lipoic acid in prokaryotes. It has two dehydrogenases namely, FabG and FabI which interact with the fatty-acid chain bound to Acyl-carrier protein (ACP), a well-studied enzyme which binds to substrates of varying lengths. This protein-protein interaction 'broadens' the active site of these dehydrogenases thus, contributing to their flexible nature. This property is exploited for catalysing numerous chiral synthons, alkanes, long-chain alcohols and secondary metabolites in industries especially with FabG...
April 29, 2019: Biotechnology Letters
https://read.qxmd.com/read/31025146/development-of-a-novel-bacterial-surface-display-system-using-truncated-ompt-as-an-anchoring-motif
#12
Chang-Ye Hui, Yan Guo, Lisa Liu, Hao-Qu Zheng, Hong-Min Wu, Liu-Zhuo Zhang, Wen Zhang
OBJECTIVES: An efficient bacterial surface display system based on the anchoring motif derived from Escherichia coli (E. coli) outer membrane protease OmpT was developed in this study. RESULTS: Referring to the classical Lpp-OmpA (LOA) display system, the signal peptide and nine amino acids of mature Lpp were fused to the transmembrane domain comprising five β-strands of truncated OmpT to generate a novel Lpp-OmpT (LOT) display system. The C-terminal fusion strategy was used to fuse a small peptide (His tag) and red fluorescent protein (mCherry) to the C-terminus of LOT...
April 25, 2019: Biotechnology Letters
https://read.qxmd.com/read/31020454/non-lipopeptide-fungi-derived-peptide-antibiotics-developed-since-2000
#13
REVIEW
Pengchao Zhao, Yun Xue, Jinghua Li, Xin Li, Xiangyang Zu, Zhanqin Zhao, Chunshan Quan, Weina Gao, Shuxiao Feng
The 2,5-diketopiperazines (DKPs) are the smallest cyclopeptides and their basic structure includes a six-membered piperazine nucleus. Typical peptides lack a special functional group in the oligopeptide nucleus. Both are produced by at least 35 representative genera of fungi, and possess huge potential as pharmaceutical drugs and biocontrol agents. To date, only cyclosporin A has been developed into a commercial product. This review summarises 186 fungi-derived compounds reported since 2000. Antibiotic (antibacterial, antifungal, synergistic antifungal, antiviral, antimycobacterial, antimalarial, antileishmanial, insecticidal, antitrypanosomal, nematicidal and antimicroalgal) activities are discussed for 107 of them, including 66 DKPs (14 epipolythiodioxopiperazines, 20 polysulphide bridge-free thiodiketopiperazines, and 32 sulphur-free prenylated indole DKPs), 15 highly N-methylated, and 26 non-highly N-methylated typical peptides...
April 24, 2019: Biotechnology Letters
https://read.qxmd.com/read/30993481/recent-advances-in-carbohydrate-based-cancer-vaccines
#14
REVIEW
Ke-Tao Jin, Huan-Rong Lan, Xiao-Yi Chen, Shi-Bing Wang, Xiao-Jiang Ying, Yan Lin, Xiao-Zhou Mou
Cancer is a complex multifactorial disease for which many promising therapeutic strategies such as immunotherapy are emerging. Malignant cells frequently express aberrant cell surface carbohydrates, which differentiate them from normal "healthy" cells. This characteristic presents a window for the development of synthetic carbohydrate antigen-based cancer vaccines which can be recognized by the immune system and can bring about T cell-dependent immune responses. Antibodies generated against the carbohydrate antigens partake in the inactivation of carbohydrate-decorated cancer cells, by slowing down tumor cell growth and inducing cancer cell apoptosis...
April 16, 2019: Biotechnology Letters
https://read.qxmd.com/read/30993480/lipid-production-from-indigenous-greek-microalgae-a-possible-biodiesel-source
#15
Alexander L Savvides, Konstantina Moisi, Efstathios A Katsifas, Amalia D Karagouni, Dimitris G Hatzinikolaou
OBJECTIVE: Microalgae gained interest for potential use as biodiesel producers, since they synthesize and accumulate significant quantities of lipids. The aim of this work was to isolate indigenous microalgae strains from Greek habitats, study their physicochemical growth conditions and finally select the best ones with respect to overall lipid production and profile. RESULTS: Two sampling sites of marine aquatic ecosystems were selected in Attica prefecture, Greece in order to screen for novel wild type strains with lipid production capacity...
April 16, 2019: Biotechnology Letters
https://read.qxmd.com/read/30968346/enzymatic-transformation-of-ginsenosides-re-rg1-and-rf-to-ginsenosides-rg2-and-aglycon-ppt-by-using-%C3%AE-glucosidase-from-thermotoga-neapolitana
#16
Yun-Feng Bi, Xi-Zhu Wang, Shan Jiang, Jing-Sheng Liu, Ming-Zhu Zheng, Ping Chen
OBJECTIVES: To enzymatically transform protopanaxatriol by using β-glucosidase from Thermotoga neapolitana (T. neapolitana) DSM 4359. RESULTS: Recombinant β-glucosidase was purified, which molecular weight was about 79.5 kDa. High levels of ginsenoside were obtained using the follow reaction conditions: 2 mg ml-1 ginsenoside, 25 U ml-1 enzyme, 85 °C, and pH 5.0. β-glucosidase converted ginsenoside Re to Rg2, Rf and Rg1 to APPT completely after 3 h under the given conditions, respectively...
April 9, 2019: Biotechnology Letters
https://read.qxmd.com/read/30963342/online-monitoring-of-the-redox-potential-in-microaerobic-and-anaerobic-scheffersomyces-stipitis-fermentations
#17
Carolina I D G Bonan, Luiz E Biazi, Samantha C Santos, Lauren B Soares, Suzane R Dionísio, Zaira B Hoffmam, Aline C Costa, Jaciane L Ienczak
OBJECTIVE: A correlation among different volumetric oxygen transfer coefficients (kL a) and the oxireduction potential (ORP) in batch fermentations using Scheffersomyces stipitis was evaluated. Experiments were performed using a mixture of xylose and glucose as the substrates. RESULTS: Microaerophilic condition (kL a = 4.9 h-1 ) have shown to be suitable when compared to complete anaerobiosis (kL a = 0), providing an ethanol yield and a productivity after 48 h of 64...
April 8, 2019: Biotechnology Letters
https://read.qxmd.com/read/30963341/a-cell-elisa-based-method-for-exosome-detection-in-diagnostic-and-therapeutic-applications
#18
Shabanali Khodashenas, Saeed Khalili, Mehdi Forouzandeh Moghadam
OBJECTIVE: Exosomes are nano-scaled carriers of miRNA, mRNA and proteins which are secreted from viable cells. Exosome detection within serum, saliva and semen offers diagnostic value for detection of various diseases including cancer. In the present study, we have lunched an in vitro study to develop a more efficient method for exosome detection. In this regard, the recombinant LAMP-DARPins (capable of Her2 targeting) gene was packed within the lentiviral particles and stably transferred into the HEK293T cells...
April 8, 2019: Biotechnology Letters
https://read.qxmd.com/read/30953310/human-genome-derived-top1-matrix-attachment-region-enhances-transgene-expression-in-the-transfected-cho-cells
#19
Yan-Long Jia, Xiao Guo, Xi-Cheng Wang, Tian-Yun Wang
OBJECTIVES: To investigate the effect of full-length fragment of DNA topoisomerase I gene (TOP1) matrix attachment regions (MARs) originating from the human genome on transgene expression in Chinese hamster ovary (CHO) cells and explore the underlying mechanisms. RESULTS: Results showed that TOP1 MAR cannot only enhance the transient and stable transgenic expression of enhanced green fluorescence protein (EGFP) but also increase long-term stability and ratio of positive colonies in transfected CHO cells with TOP1 MAR at the 5' or 3' ends of the EGFP expression cassette...
April 5, 2019: Biotechnology Letters
https://read.qxmd.com/read/30953309/theophylline-inducible-riboswitch-accurately-regulates-protein-expression-at-low-level-in-escherichia-coli
#20
Rikuto Kamiura, Yoshihiro Toya, Fumio Matsuda, Hiroshi Shimizu
OBJECTIVES: Fine-tuning of enzyme expression at low levels is an important challenge for metabolic engineers. Here, theophylline-inducible riboswitch for translational regulation was evaluated. The background expression, translation rate, and time delay for its induction was reported. RESULTS: To evaluate the effect of the amount of mRNA on its translation rate, transcription of the riboswitch RNA with red fluorescent protein (RFP) was controlled by the lac system with addition of isopropyl β-D-1-thiogalactopyranoside in Escherichia coli...
April 5, 2019: Biotechnology Letters
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