journal
https://read.qxmd.com/read/38582451/jnk-activity-modulates-postsynaptic-scaffold-protein-sap102-and-kainate-receptor-dynamics-in-dendritic-spines
#21
JOURNAL ARTICLE
Stella-Amrei Kunde, Bettina Schmerl, Judith von Sivers, Elham Ahmadyar, Taanisha Gupta, Nils Rademacher, Hanna L Zieger, Sarah A Shoichet
Synapse formation depends on the coordinated expression and regulation of scaffold proteins. The JNK family kinases play a role in scaffold protein regulation, but the nature of this functional interaction in dendritic spines requires further investigation. Here, using a combination of biochemical methods and live-cell imaging strategies, we show that the dynamics of the synaptic scaffold molecule SAP102 are negatively regulated by JNK inhibition, that SAP102 is a direct phosphorylation target of JNK3, and that SAP102 regulation by JNK is restricted to neurons that harbour mature synapses...
April 4, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38582450/the-molecular-principles-underlying-diverse-functions-of-the-slc26-family-of-proteins
#22
JOURNAL ARTICLE
Satoe Takahashi, Kazuaki Homma
Mammalian SLC26 proteins are membrane-based anion transporters that belong to the large SLC26/SulP family, and many of their variants are associated with hereditary diseases. Recent structural studies revealed a strikingly similar homodimeric molecular architecture for several SLC26 members, implying a shared molecular principle. Now a new question emerges as to how these structurally similar proteins execute diverse physiological functions. In this study we sought to identify the common vs. distinct molecular mechanism among the SLC26 proteins using both naturally occurring and artificial missense changes introduced to SLC26A4, SLC26A5, and SLC26A9...
April 4, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38582449/structural-characterization-of-methylation-independent-pp2a-assembly-guides-alphafold2multimer-prediction-of-family-wide-pp2a-complexes
#23
JOURNAL ARTICLE
Franziska Wachter, Radosław P Nowak, Scott Ficarro, Jarrod Marto, Eric S Fischer
Dysregulation of phosphorylation-dependent signaling is a hallmark of tumorigenesis. Protein phosphatase 2 (PP2A) is an essential regulator of cell growth. One scaffold subunit (A) binds to a catalytic subunit (C) to form a core AC heterodimer, which together with one of many regulatory (B) subunits forms the active trimeric enzyme. The combinatorial number of distinct PP2A complexes is large, which results in diverse substrate specificity and subcellular localization. The detailed mechanism of PP2A assembly and regulation remains elusive and reports about an important role of methylation of the carboxy terminus of PP2A C are conflicting...
April 4, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38582448/structural-analysis-of-the-sam-domain-of-the-arabidopsis-mitochondrial-trna-import-receptor
#24
JOURNAL ARTICLE
Bence Olasz, Luke Smithers, Genevieve L Evans, Anandhi Anandan, Monika W Murcha, Alice Vrielink
Mitochondria are membrane bound organelles of endosymbiotic origin with limited protein coding capacity. The import of nuclear-encoded protein and nucleic acids is required and essential for maintaining organelle mass, number and activity. As plant mitochondria do not encode all the necessary tRNA types required, the import of cytosolic tRNA is vital for organelle maintenance. Recently, two mitochondrial outer membrane proteins, named Tric1 and Tric2, for tRNA import component, were shown to be involved in the import of cytosolic tRNA...
April 4, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38582447/klf15-maintains-contractile-phenotype-of-vascular-smooth-muscle-cells-and-prevents-thoracic-aortic-dissection-by-interacting-with-mrtfb
#25
JOURNAL ARTICLE
Guangming Fang, Yexuan Tian, Shan Huang, Xiaoping Zhang, Yan Liu, Yulin Li, Jie Du, Shijuan Gao
Thoracic aortic dissection (TAD) is a highly dangerous cardiovascular disorder caused by weakening of the aortic wall, resulting in a sudden tear of the internal face. Progressive loss of the contractile apparatus in vascular smooth muscle cells (VSMCs) is a major event in TAD. Exploring the endogenous regulators essential for the contractile phenotype of VSMCs may aid the development of strategies to prevent TAD. Krüppel-like factor 15 (KLF15) overexpression was reported to inhibit TAD formation; however, the mechanisms by which KLF15 prevents TAD formation and whether KLF15 regulates the contractile phenotype of VSMCs in TAD are not well understood...
April 4, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38582446/applications-of-protein-ubiquitylation-and-deubiquitylation-in-drug-discovery
#26
REVIEW
Yilin Chen, Haoan Xue, Jianping Jin
The ubiquitin-proteasome system (UPS) is the major machinery mediating specific protein turnover in eukaryotic cells. By ubiquitylating unwanted, damaged, or harmful proteins and driving their degradation, UPS is involved in many important cellular processes. Several new UPS-based technologies, including molecular glue degraders and PROTACs (Proteolysis-targeting chimeras) to promote protein degradation, and DUBTACs (deubiquitinase-targeting chimeras) to increase protein stability, have been developed. By specifically inducing the interactions between different ubiquitin ligases and targeted proteins that are not otherwise related, molecular glue degraders and PROTACs degrade targeted proteins via the ubiquitin-proteasome system; in contrast, by inducing the proximity of targeted proteins to deubiquitinases, DUBTACs are created to clear degradable polyubiquitin chains to stabilize targeted proteins...
April 4, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38579376/correction-two-c18-hydroxy-cyclohexenone-fatty-acids-from-mammalian-epidermis-potential-relation-to-12r-lipoxygenase-and-covalent-binding-of-ceramides
#27
Alan R Brash, Saori Noguchi, William E Boeglin, M Wade Calcutt, Donald F Stec, Claus Schneider, Jason M Meyer
No abstract text is available yet for this article.
April 4, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38579375/correction-analysis-of-poly-ethylene-terephthalate-degradation-kinetics-of-evolved-ispetase-variants-using-a-surface-crowding-mode
#28
En Ze Linda Zhong-Johnson, Ziyue Dong, Christopher T Canova, Francesco Destro, Marina Cañellas, Mikaila C Hoffman, Jeanne Maréchal, Timothy M Johnson, Maya Zheng, Gabriela S Schlau-Cohen, Maria Fátima Lucas, Richard D Braatz, Kayla G Sprenger, Christopher A Voigt, Anthony J Sinskey
No abstract text is available yet for this article.
April 4, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38579991/mst4-a-novel-cardiac-stripak-complex-associated-kinase-regulates-cardiomyocyte-growth-and-survival-and-is-upregulated-in-human-cardiomyopathy
#29
JOURNAL ARTICLE
Matthias Eden, Marius Leye, Justus Hahn, Emanuel Heilein, Marcin Luzarowski, Bill Völschow, Christin Tannert, Samuel Sossalla, Carlota Lucena-Porcel, Derk Frank, Norbert Frey
Myocardial failure is associated with adverse remodeling which includes apoptotic loss of cardiomyocytes, hypertrophy as well as alterations in cell-cell contacts. Striatin-interacting phosphatase and kinase (STRIPAK) complexes and their kinase Mst4 have been linked to the development of different diseases. The role and targets of Mst4 in cardiomyocytes have not been investigated, yet. Multi tissue immunoblot experiments show highly enriched Mst4-expression in rodent hearts. Analyses of human biopsy samples from patients suffering from dilated cardiomyopathy revealed that Mst4 is upregulated (5,8-fold p<0...
April 3, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38579990/making-a-living-off-the-rainbow-s-edge-how-phycobilisomes-adapt-structurally-to-absorb-far-red-light
#30
JOURNAL ARTICLE
Matthew S Kimber
Cyanobacteria harvest light by using architecturally complex, soluble, light-harvesting complexes known as phycobilisomes. Phycobilisome diversity includes specialized paralogs that can be specific regions of the light spectrum; some cyanobacterial lineages can even absorb far-red light. In a recent issue of JBC, Gisriel et al. reported the cryo-electron microscopic structure of a far-red phycobilisome core, showing how bilin-binding in the α-subunits of phycocyanin paralogs can modify the bilin binding site to shift the absorbance spectrum...
April 3, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38574891/interplay-of-rap2-gtpase-and-the-cytoskeleton-in-hippo-pathway-regulation
#31
JOURNAL ARTICLE
Chenzhou Wu, Xiaomin Cai, Ying Wang, Carlos D Rodriguez, Giorgia Zoaldi, Lydia Herrmann, Chun-Yuh Huang, Xiaoqiong Wang, Viraj R Sanghvi, Rongze O Lu, Zhipeng Meng
The Hippo signaling is instrumental in regulating organ size, regeneration, and carcinogenesis. The cytoskeleton emerges as a primary Hippo signaling modulator. Its structural alterations in response to environmental and intrinsic stimuli control Hippo signaling pathway activity. However, the precise mechanisms underlying the cytoskeleton regulation of Hippo signaling are not fully understood. RAP2 GTPase is known to mediate the mechanoresponses of Hippo signaling via activating the core Hippo kinases LATS1/2 through MAP4Ks and MST1/2...
April 2, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38569940/the-igg-specific-endoglycosidases-endos-and-endos2-are-distinguished-by-conformation-and-antibody-recognition
#32
JOURNAL ARTICLE
Abigail S L Sudol, Max Crispin, Ivo Tews
The IgG-specific endoglycosidases EndoS and EndoS2 from Streptococcus pyogenes can remove conserved N-linked glycans present on the Fc region of host antibodies to inhibit Fc-mediated effector functions. These enzymes are therefore being investigated as therapeutics for suppressing unwanted immune activation, and have additional application as tools for antibody glycan remodelling. EndoS and EndoS2 differ in Fc glycan substrate specificity due to structural differences within their catalytic glycosyl hydrolase domains...
April 1, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38569939/engineered-interleukin-6-derived-cytokines-recruit-artificial-receptor-complexes-and-disclose-cntf-signaling-via-the-osmr
#33
JOURNAL ARTICLE
Puyan Rafii, Patricia Rodrigues Cruz, Julia Ettich, Christiane Seibel, Giacomo Padrini, Christoph Wittich, Alexander Lang, Patrick Petzsch, Karl Köhrer, Jens M Moll, Doreen M Floss, Jürgen Scheller
Ciliary neurotrophic factor (CNTF) activates cells via the non-signaling α-receptor CNTF receptor (CNTFR) and the two signaling β-receptors glycoprotein 130 (gp130) and leukemia inhibitory factor receptor (LIFR). The CNTF derivate, Axokine was protective against obesity and insulin resistance but clinical development was halted by the emergence of CNTF-antibodies. The chimeric cytokine IC7 used the framework of Interleukin (IL-)6 with the LIFR-binding site from CNTF to activate cells via IL-6R:gp130:LIFR complexes...
April 1, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38569938/homocysteine-induced-sustained-glun2a-nmda-receptor-stimulation-leads-to-mitochondrial-ros-generation-and-neurotoxicity
#34
JOURNAL ARTICLE
Satya Narayan Deep, Sarah Seelig, Surojit Paul, Ranjana Poddar
Homocysteine, a sulfur-containing amino acid derived from methionine metabolism, is a known agonist of N-methyl-D-aspartate receptor (NMDAR) and is involved in neurotoxicity. Our previous findings showed that neuronal exposure to elevated homocysteine levels leads to sustained low-level increase in intracellular Ca2+ , which is dependent on GluN2A subunit-containing NMDAR (GluN2A-NMDAR) stimulation. These studies further showed a role of ERK MAPK in homocysteine-GluN2A-NMDAR mediated neuronal death. However, the intracellular mechanisms associated with such sustained GluN2A-NMDAR stimulation and subsequent Ca2+ influx have remained unexplored...
April 1, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38569937/receptor-activated-transcription-factors-and-beyond-multiple-modes-of-smad2-3-dependent-transmission-of-tgf-%C3%AE-signaling
#35
REVIEW
Keiji Miyazawa, Yuka Itoh, Hao Fu, Kohei Miyazono
Transforming growth factor β (TGF-β) is a pleiotropic cytokine that is widely distributed throughout the body. Its receptor proteins, TGF-β type I and type II receptors, are also ubiquitously expressed. Therefore, the regulation of various signaling outputs in a context-dependent manner is a critical issue in this field. Smad proteins were originally identified as signal-activated transcription factors similar to signal transducer and activator of transcription proteins. Smads are activated by serine phosphorylation mediated by intrinsic receptor dual specificity kinases of the TGF-β family, indicating that Smads are receptor-restricted effector molecules downstream of ligands of the TGF-β family...
April 1, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38569936/structure-function-analysis-of-plant-g-protein-regulatory-mechanisms-identifies-key-g%C3%AE-rgs-protein-interactions
#36
JOURNAL ARTICLE
Maria Daniela Torres-Rodriguez, Soon Goo Lee, Swarup Roy Choudhury, Rabindranath Paul, Balaji Selvam, Diwakar Shukla, Joseph M Jez, Sona Pandey
Heterotrimeric GTP-binding protein alpha subunit (Gα) and its cognate regulator of G-protein signaling (RGS) protein transduce signals in eukaryotes spanning protists, amoeba, animals, fungi, and plants. The core catalytic mechanisms of the GTPase activity of Gα and the interaction interface with RGS for acceleration of GTP hydrolysis seem to be conserved across these groups; however, the RGS gene is under low selective pressure in plants, resulting in its frequent loss. Our current understanding of the structural basis of Gα:RGS regulation in plants has been shaped by Arabidopsis Gα, (AtGPA1), which has a cognate RGS protein...
April 1, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38569935/in-silico-prediction-of-heme-binding-in-proteins
#37
JOURNAL ARTICLE
Noa A Marson, Andrea E Gallio, Suman K Mandal, Roman A Laskowski, Emma L Raven
The process of heme binding to a protein is prevalent in almost all forms of life to control many important biological properties, such as O2 -binding, electron transfer, gas sensing or to build catalytic power. In these cases, heme typically binds tightly (irreversibly) to a protein in a discrete heme binding pocket, with one or two heme ligands provided most commonly to the heme iron by His, Cys or Tyr residues. Heme binding can also be used as a regulatory mechanism, for example in transcriptional regulation or ion channel control...
April 1, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38569934/nesprin-2-is-a-novel-scaffold-protein-for-telethonin-and-fhl-2-in-the-cardiomyocyte-sarcomere
#38
JOURNAL ARTICLE
Chen Li, Derek T Warren, Can Zhou, Shanelle De Silva, Darren G S Wilson, Mitla Garcia-Maya, Mathew A Wheeler, Peter Meinke, Greta Sawyer, Elisabeth Ehler, Manfred Wehnert, Li Rao, Qiuping Zhang, Catherine M Shanahan
Nesprins comprise a family of multi-isomeric scaffolding proteins, forming the linker of nucleoskeleton-and-cytoskeleton complex with lamin A/C, emerin and SUN1/2 at the nuclear envelope. Mutations in nesprin-1/-2 are associated with Emery-Dreifuss muscular dystrophy (EDMD) with conduction defects and dilated cardiomyopathy (DCM). We have previously observed sarcomeric staining of nesprin-1/-2 in cardiac and skeletal muscle, but nesprin function in this compartment remains unknown. In this study we show that specific nesprin-2 isoforms are highly expressed in cardiac muscle and localise to the Z-disc and I band of the sarcomere...
April 1, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38569933/human-eukaryotic-initiation-factor-4g-directly-binds-the-40s-ribosomal-subunit-to-promote-efficient-translation
#39
JOURNAL ARTICLE
Nancy Villa, Christopher S Fraser
Messenger RNA (mRNA) recruitment to the 40S ribosomal subunit is mediated by eukaryotic initiation factor 4F (eIF4F). This complex includes 3 subunits: eIF4E (m7 G cap binding protein), eIF4A (DEAD-box helicase), and eIF4G. Mammalian eIF4G is a scaffold that coordinates the activities of eIF4E and eIF4A and provides a bridge to connect the mRNA and 40S ribosomal subunit through its interaction with eIF3. While the roles of many eIF4G binding domains are relatively clear, the precise function of RNA binding by eIF4G remains to be elucidated...
April 1, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38556087/tissue-specific-transcriptional-programming-of-macrophages-controls-the-microrna-transcriptome-targeting-multiple-functional-pathways
#40
JOURNAL ARTICLE
Magdalena A Czubala, Robert H Jenkins, Mark Gurney, Leah Wallace, Benjamin Cossins, James Dennis, Marcela Rosas, Robert Andrews, Donald Fraser, Philip R Taylor
Recent interest in the biology and function of peritoneal tissue resident macrophages (pMΦ) has led to a better understanding of their cellular origin, programming and renewal. The programming of pMΦ is dependent on microenvironmental cues and tissue specific transcription factors, including GATA6. However, the contribution of microRNAs remains poorly defined. We conducted a detailed analysis of the impact of GATA6-deficiency on microRNA expression in mouse pMΦ. Our data suggest that for many of the pMΦ, microRNA composition may be established during tissue specialization, and that the effect of GATA6 knockout is largely unable to be rescued in the adult by exogenous GATA6...
March 29, 2024: Journal of Biological Chemistry
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