journal
https://read.qxmd.com/read/39097165/histopathological-based-analysis-of-human-kidney-spatial-transcriptomics-data-toward-precision-pathology
#41
JOURNAL ARTICLE
Pierre Isnard, Dian Li, Qiao Xuanyuan, Haojia Wu, Benjamin D Humphreys
The application of spatial transcriptomic (ST) technologies is booming, and has already yielded important insights across many different tissues and disease models. In nephrology, ST technologies have helped to decipher the cellular and molecular mechanisms at work in kidney diseases and have allowed the recent creation of spatially anchored human kidney atlases in healthy and diseased kidney tissues. During ST data analysis, the obtained computationally-annotated clusters are often superimposed on a histological image without their initial identification being based on the morphological and spatial analysis of the tissues and lesions...
August 1, 2024: American Journal of Pathology
https://read.qxmd.com/read/39069170/lactate-contributes-to-remote-ischemic-preconditioning-mediated-protection-against-myocardial-ischemia-reperfusion-injury-by-facilitating-autophagy-via-ampk-mtor-tfeb-cx43-axis
#42
JOURNAL ARTICLE
Zhang-Jian Yang, Wei-Fang Zhang, Qing-Qing Jin, Zhi-Rong Wu, Yun-Yan Du, Hao Shi, Zhen-Sheng Qu, Xiao-Jian Han, Li-Ping Jiang
Remote ischemic preconditioning (RIPC) exerts a protective role on myocardial ischemia reperfusion (I/R) injury by the release of various humoral factors. Lactate is a common metabolite in ischemic tissues. Nevertheless, little is known about the role lactate plays in myocardial I/R injury and its underlying mechanism. This investigation revealed that RIPC elevated the level of lactate in blood and myocardium. Furthermore, AZD3965, a selective monocarboxylate transporter 1 (MCT1) inhibitor and 2-Deoxy-D-glucose (2-DG), a glycolysis inhibitor, mitigated the effects of RIPC-induced elevated lactate in the myocardium and prevented RIPC against myocardial I/R injury...
July 26, 2024: American Journal of Pathology
https://read.qxmd.com/read/39069169/wnt-5a-ror2-signaling-provokes-metastatic-colonization-and-angiogenesis-in-renal-cell-carcinoma-and-the-axis-activation-is-suppressed-by-prunetin
#43
JOURNAL ARTICLE
Wen-Yu Chuang, Chao-Wei Lee, Wen-Lang Fan, Tsung-Ta Liu, Zih-Han Lin, Kuo-Chih Wang, Po-Jung Huang, Yuan-Ming Yeh, Tsung-Chieh Lin
Wnt-5a is a protein that is encoded by the WNT5A gene and is a ligand for the ROR2 receptor. However, its biological impact on clear cell renal cell carcinoma (ccRCC) remains unclear. In this study, the prognostic significance of concurrent WNT5A and ROR2 expression levels was observed to predict unfavorable overall survival and disease-specific survival. High Wnt-5a expression was detected in a ccRCC cell line panel but not in HK-2 cells, a normal proximal tubular cell line. Inhibition of DNA methyltransferase by 5-azaC in 786-O and Caki-2 cells resulted in Wnt-5a upregulation, indicating potential epigenetic modification...
July 26, 2024: American Journal of Pathology
https://read.qxmd.com/read/39069168/acyl-coa-synthetase-medium-chain-family-member-5-mediated-fatty-acid-metabolism-dysregulation-promotes-the-progression-of-hepatocellular-carcinoma
#44
JOURNAL ARTICLE
Lei Yang, Kien Pham, Yibo Xi, Shaoning Jiang, Keith Robertson, Chen Liu
Hepatocellular carcinoma (HCC) is the most common primary liver cancer, with high incidence and mortality worldwide. Despite diagnostic and therapeutic advancements, HCC remains poorly responsive to treatment with a poor prognosis. Understanding the molecular mechanisms driving HCC is crucial for developing effective therapies. Emerging evidence indicates that dysregulated fatty acid metabolism contributes to HCC. Acyl-CoA medium-chain synthetase 5 (ACSM5), involved in fatty acid metabolism, is downregulated in HCC, however, its role is not well understood...
July 26, 2024: American Journal of Pathology
https://read.qxmd.com/read/39069167/pleckstrin-2-mediates-the-activation-of-akt-in-prostate-cancer-and-is-repressed-by-androgen-receptor
#45
JOURNAL ARTICLE
Xu Han, Ali Zhang, Pan Wang, Honghao Bi, Kehan Ren, Ermin Li, Ximing Yang, Inci Aydemir, Kara Tao, Jeffrey Lin, Sarki A Abdulkadir, Jing Yang, Peng Ji
PI3K-AKT and androgen receptor (AR) pathways are commonly activated in prostate cancers. Their reciprocal regulation makes it difficult to treat advanced prostate cancers. Here, we show that Pleckstrin-2 (PLEK2), a proto-oncoprotein involved in the activation and stabilization of AKT, connects these two pathways. We first provide genetic evidence that Plek2 deficiency largely reverted tumorigenesis in Pten prostate-specific knockout mice. Overexpression of PLEK2 promotes the proliferation and colony formation of prostate cancer cells in vitro...
July 26, 2024: American Journal of Pathology
https://read.qxmd.com/read/39032605/artificial-intelligence-based-histopathological-subtyping-of-high-grade-serous-ovarian-cancer
#46
JOURNAL ARTICLE
Akihiko Ueda, Hidekatsu Nakai, Chiho Miyagawa, Tomoyuki Otani, Manabu Yoshida, Ryusuke Murakami, Shinichi Komiyama, Terumi Tanigawa, Takeshi Yokoi, Hirokuni Takano, Tsukasa Baba, Kiyonori Miura, Muneaki Shimada, Junzo Kigawa, Takayuki Enomoto, Junzo Hamanishi, Aikou Okamoto, Yasushi Okuno, Masaki Mandai, Noriomi Matsumura
Four subtypes of ovarian high-grade serous carcinoma (HGSC) have previously been identified, each with different prognoses and drug sensitivities. However, the accuracy of the classification depended on the assessor's experience. This study aimed to develop a universal algorithm for HGSC-subtype classification using deep learning techniques. An artificial intelligence (AI)-based classification algorithm, which replicates the consensus diagnosis of pathologists, was formulated to analyze the morphological patterns and tumor-infiltrating lymphocyte counts for each tile extracted from whole slide images of ovarian HGSC available in The Cancer Genome Atlas (TCGA) dataset...
July 18, 2024: American Journal of Pathology
https://read.qxmd.com/read/39032604/influenza-sars-cov-2-and-their-impact-on-chronic-lung-diseases-and-fibrosis-exploring-therapeutic-options
#47
REVIEW
Sourabh Soni, Laura Antonescu, Kaylin Ro, Jeffrey C Horowitz, Yohannes A Mebratu, Richard S Nho
Respiratory tract infections represent a significant global public health concern, disproportionately affecting vulnerable populations such as children, the elderly, and immunocompromised individuals. RNA viruses, particularly influenza viruses and coronaviruses, significantly contribute to respiratory illnesses, especially in immunosuppressed and elderly individuals. Influenza A viruses (IAVs) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) continue to pose global health threats due to their capacity to cause annual epidemics, with profound implications for public health...
July 18, 2024: American Journal of Pathology
https://read.qxmd.com/read/39032603/the-role-of-twist1-in-chronic-pancreatitis-associated-pancreatic-stellate-cells
#48
JOURNAL ARTICLE
Emma Geister, Dalton Ard, Heer Patel, Alyssa Findley, Godfrey DeSouza, Lyndsay Martin, Henry Knox, Natasha Gavara, Aurelia Lugea, Maria Eugenia Sabbatini
In a healthy pancreas, pancreatic stellate cells (PaSCs) synthesize the basement membrane, which is mainly composed of type IV collagen and laminin. In chronic pancreatitis (CP), PaSCs are responsible for the production of a rigid extracellular matrix (ECM) that is mainly composed of fibronectin and type I/III collagen. Reactive oxygen species evoke the formation of the rigid ECM by PaSCs. One source of reactive oxygen species is NADPH oxidase (Nox) enzymes. Nox1 up-regulates the expression of Twist1 and matrix metalloproteinase-9 (MMP-9) in PaSCs from mice with CP...
July 18, 2024: American Journal of Pathology
https://read.qxmd.com/read/39032602/single-nucleus-rna-sequencing-reveals-loss-of-dct1-renal-tubules-in-hiv-vpr-transgenic-mice
#49
JOURNAL ARTICLE
Khun Zaw Latt, Teruhiko Yoshida, Shashi Shrivastav, Amin Abedini, Jeff M Reece, Zeguo Sun, Hewang Lee, Koji Okamoto, Pradeep Dagur, Yu Ishimoto, Jurgen Heymann, Yongmei Zhao, Joon-Yong Chung, Stephen Hewitt, Pedro A Jose, Kyung Lee, John Cijiang He, Cheryl A Winkler, Mark A Knepper, Tomoshige Kino, Avi Z Rosenberg, Katalin Susztak, Jeffrey B Kopp
Hyponatremia and salt wasting is a common occurance in patients with HIV/AIDS, however, the understanding of its contributing factors is limited. HIV viral protein R (Vpr) contributes to HIV-associated nephropathy. To investigate the effects of Vpr on the distal tubules and on the expression level of the Slc12a3 gene, encoding the Na-Cl cotransporter, which is responsible for sodium reabsorption in distal nephron segments, single-nucleus RNA sequencing was performed on kidney cortices from three wild-type (WT) and three Vpr-transgenic (Vpr Tg) mice...
July 18, 2024: American Journal of Pathology
https://read.qxmd.com/read/39032601/splice-streamlining-digital-pathology-image-processing
#50
JOURNAL ARTICLE
Areej Alsaafin, Peyman Nejat, Abubakr Shafique, Jibran Khan, Saghir Alfasly, Ghazal Alabtah, Hamid R Tizhoosh
Digital pathology and the integration of artificial intelligence (AI) models have revolutionized histopathology, opening new opportunities. With the increasing availability of Whole Slide Images (WSIs), there's a growing demand for efficient retrieval, processing, and analysis of relevant images from vast biomedical archives. However, processing WSIs presents challenges due to their large size and content complexity. Full computer digestion of WSIs is impractical, and processing all patches individually is prohibitively expensive...
July 18, 2024: American Journal of Pathology
https://read.qxmd.com/read/39032600/cardiac-atrophy-dysfunction-and-metabolic-impairments-a-cancer-induced-cardiomyopathy-phenotype
#51
JOURNAL ARTICLE
Leslie M Ogilvie, Luca J Delfinis, Bridget Coyle-Asbil, Vignesh Vudatha, Razan Alshamali, Bianca Garlisi, Madison Pereira, Kathy Matuszewska, Madison C Garibotti, Shivam Gandhi, Keith R Brunt, Geoffrey A Wood, Jose G Trevino, Christopher G R Perry, Jim Petrik, Jeremy A Simpson
Muscle atrophy and weakness are prevalent features of cancer. While extensive research has characterized skeletal muscle wasting in cancer cachexia, limited studies have investigated how cardiac structure and function are affected by therapy-naïve cancer. Here we used orthotopic, syngeneic models of epithelial ovarian cancer (EOC) and pancreatic ductal adenocarcinoma (PDAC), and a patient-derived pancreatic xenograft model (PDX), to define the impacts of malignancy on cardiac structure, function, and metabolism...
July 18, 2024: American Journal of Pathology
https://read.qxmd.com/read/39032599/caspase-1-inhibition-ameliorates-photoreceptor-damage-following-retinal-detachment-by-inhibiting-microglial-pyroptosis
#52
JOURNAL ARTICLE
Yumei Cao, Lei Qiao, Yingying Song, Yuanye Yan, Yewen Ni, Huiyu Xi, Jiayu Chen, Suyan Li, Haiyang Liu
Retinal detachment (RD) is a sight-threatening condition that occurs in several retinal diseases. Microglia that reside in retina are activated after RD and are involved in the death of photoreceptor cells. The involvement of microglial pyroptosis in the early pathological process of RD is still unclear. It has been shown that VX-765, an inhibitor of Caspase-1, may exert neuroprotective effects by targeting microglial pyroptosis in nervous system disease; however, whether it plays a role in RD is uncertain...
July 18, 2024: American Journal of Pathology
https://read.qxmd.com/read/39322335/retraction-notice-to-bone-marrow-ablation-demonstrates-that-excess-endogenous-parathyroid-hormone-plays-distinct-roles-in-trabecular-and-cortical-bone-am-j-pathol-181-2012-234-244
#53
Jun Yan, Weiwei Sun, Jing Zhang, David Goltzman, Dengshun Miao
No abstract text is available yet for this article.
October 2024: American Journal of Pathology
https://read.qxmd.com/read/39322334/glucocorticoid-receptor-signaling-is-critical-for-mouse-corneal-development-inhibition-of-inflammatory-response-and-neovascularization-of-the-cornea
#54
JOURNAL ARTICLE
Mahita Kadmiel, David Diaz-Jimenez, Robert H Oakley, Maria G Petrillo, Bo He, Xiaojiang Xu, John A Cidlowski
The cornea protects the interior of the eye from external agents such as bacteria, viruses, and debris. Synthetic glucocorticoids are widely prescribed in the treatment of ocular infections and disorders. The actions of glucocorticoids are mediated by the glucocorticoid receptor (GR); however, the molecular and physiological functions of GR signaling in the cornea are poorly understood. This study found that treatment of mice with glucocorticoid eye drops led to a profound regulation of the corneal transcriptome...
October 2024: American Journal of Pathology
https://read.qxmd.com/read/39182949/retraction-notice-to-pharmacologic-blockade-of-5-lipoxygenase-improves-the-amyloidotic-phenotype-of-an-alzheimer-s-disease-transgenic-mouse-model-involvement-of-%C3%AE-secretase-am-j-pathol-178-2011-1762-1769
#55
JOURNAL ARTICLE
https://read.qxmd.com/read/39182948/sex-differences-in-impacts-of-early-gestational-and-peri-adolescent-ozone-exposure-on-lung-development-in-rats-implications-for-later-life-disease-in-humans
#56
JOURNAL ARTICLE
Janice A Dye, Helen H Nguyen, Erica J Stewart, Mette C J Schladweiler, Colette N Miller
Air pollution exposure during pregnancy may affect fetal growth. Fetal growth restriction (FGR) is associated with reduced lung function in children that can persist into adulthood. Using an established model of asymmetrical FGR in Long-Evans rats, this study investigated sex differences in effects of early life ozone exposure on lung development and maturation. Adverse health effects for i) gestational exposure (with impacts on primary alveolarization), ii) peri-adolescent exposure (with impacts on secondary alveolarization), and iii) cumulative exposure across both periods were evaluated...
September 2024: American Journal of Pathology
https://read.qxmd.com/read/38762117/advancing-automatic-gastritis-diagnosis-an-interpretable-multilabel-deep-learning-framework-for-the-simultaneous-assessment-of-multiple-indicators
#57
JOURNAL ARTICLE
Mengke Ma, Xixi Zeng, Linhao Qu, Xia Sheng, Hongzheng Ren, Weixiang Chen, Bin Li, Qinghua You, Li Xiao, Yi Wang, Mei Dai, Boqiang Zhang, Changqing Lu, Weiqi Sheng, Dan Huang
The evaluation of morphologic features, such as inflammation, gastric atrophy, and intestinal metaplasia, is crucial for diagnosing gastritis. However, artificial intelligence analysis for nontumor diseases like gastritis is limited. Previous deep learning models have omitted important morphologic indicators and cannot simultaneously diagnose gastritis indicators or provide interpretable labels. To address this, an attention-based multi-instance multilabel learning network (AMMNet) was developed to simultaneously achieve the multilabel diagnosis of activity, atrophy, and intestinal metaplasia with only slide-level weak labels...
August 2024: American Journal of Pathology
https://read.qxmd.com/read/38977262/this-month-in-ajp
#58
JOURNAL ARTICLE
(no author information available yet)
No abstract text is available yet for this article.
July 6, 2024: American Journal of Pathology
https://read.qxmd.com/read/38880601/identification-of-htra4-as-a-transcriptional-target-of-p63-in-trophoblast
#59
JOURNAL ARTICLE
Mary E Donohoe, Robert Morey, Yingchun Li, Donald Pizzo, Sampada Kallol, Hee-Young Cho, Francesca Soncin, Mana M Parast
The placenta plays a crucial role in pregnancy success. ΔNp63α (p63), a transcription factor from the TP53 family, is highly expressed in villous cytotrophoblasts (CTBs), the epithelial stem cells of the human placenta, and is involved in CTB maintenance and differentiation. We examined the mechanisms of action of p63 by identifying its downstream targets. Gene expression changes were evaluated following overexpression and knockdown of p63 in the JEG3 choriocarcinoma cell line, using microarray-based RNA profiling...
July 2024: American Journal of Pathology
https://read.qxmd.com/read/38631549/stromal-rigidity-stress-accelerates-pancreatic-intraepithelial-neoplasia-progression-and-chromosomal-instability-via-nuclear-protein-tyrosine-kinase-2-localization
#60
JOURNAL ARTICLE
Li-Yun Ding, Chia-Jung Chang, Szu-Ying Chen, Kuan-Lin Chen, Yueh-Shan Li, Yun-Chieh Wu, Ting-Yi Hsu, Hsin-Yu Ying, Hsin-Yi Wu, Michael W Hughes, Chia-Yih Wang, Chih-Han Chang, Ming-Jer Tang, Woei-Jer Chuang, Yan-Shen Shan, Chia-Jung Chang, Po-Hsien Huang
Because the mechanotransduction by stromal stiffness stimulates the rupture and repair of the nuclear envelope in pancreatic progenitor cells, accumulated genomic aberrations are under selection in the tumor microenvironment. Analysis of cell growth, micronuclei, and phosphorylated Ser-139 residue of the histone variant H2AX (γH2AX) foci linked to mechanotransduction pressure in vivo during serial orthotopic passages of mouse KrasLSL-G12D/+ ;Trp53flox/flox ;Pdx1-Cre (KPC) cancer cells in the tumor and in migrating through the size-restricted 3-μm micropores...
July 2024: American Journal of Pathology
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